RLG00000006892

Transferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0017651
Physical Location & Seq
Reverse (-)
11571458 .. 11572765
1308 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006892

Sequence Viewer

Length: 1308 bp
ATGGCTACAGTGCAGCTCGAAGTAATATCCAGAGAGCTCATCAAACCCTCCTCTCAAACTCCACATCACCTAAGAAACTACAACCTCTCCTACTTCGATCAGCTCTCTCCTCGTAAGTACATCCCGCTTGTTCTTTTCTATAACCCTTGCAATACCACTGCTAGCACTTTTGAGACATCCATTCTTCTCAAAAAATCTTTATCTGAAACCCTAGCCTTTTACTACCCATTTGCCGGAAAGGTCAAAGATCAAGAGGTCATCGACTGCAACGACGAGGGAATTTTGTTCTTAGAAGCAAAGGTCAAACTGAAGTTGTCTGAAATTCTTGAGAATCCGAAACATGAAATTTTGGACCTTTTATTTGCAGACAATTTGCAGTGGAATGATACGAATTTGAGTACTTTAGTTGCTGTACAAGTCAGCTACTTTGATTGTGGAGGAATGGCATTAAGTGTGTGCATGTCACACAAAATTGGCGATGCAGCAACCATGGTCAATTTCGTCAATGACTGGGCTGCCAAGGCCTCAAACTCAGGTAAACAAGTTTCCCCTCTGCTCTATACACCCTCGATTTTTCCAAGGGGTGACTTACCACTTATGCCGCAGCCGGAATATTCCATCAAGAAAGAAAATTGTGCCTCCAGAAGGTTTGTATTCGATGCCCAAAAAATTGCGGCCCTCAAAGCCATTGTAGCTGACAGAGTGCAAAAGGCTACAAAGGTAGAGGTTGTGAGTGCTCTACTATTTAAGTGTGCAATTTCTGCCGCCAATGCAAGTTCATCAGGTACTACAAGACCAACCCTTTTTCTCCAAAATGTTAACCTTCGTACCAGGATGATTCCTCCGCTACCAGAAAACTATGTGGGTAACATCAGTTGGGTATTTCCGGTACCAAAAGGGGAGGACAGTTTGCATTGCTTGGTGGGTCAAATGAAAGAGGCCTTGTCAGATTTCTGCAACACATATGTTAAGAATGTAAGGGATACAGAATTGGCCTTGAGCATTAGCAAAACCATGGAGAAGATGCGGGCTATGTTCAAAAGCAGTAAGCAATGTGTGCAATACAATTGTAGTAGCTGGTGCAGGTTCCCAGTATACGAAGCAGATTTTGGGTGGGGAAAGCCAGTGTGGGTTAGTATTGGGGCTTGTCTTGACAAGAATGTTATAATTCTGATGGATAGTAAAAGTGGGGATGGGATCGAAGCTTTTGTCACTCTGGAAGAGCAAGACATGGCTGCTTTTGAGTGTGATGAGGAGTTACTAGCATTTGCTGCTCTAAATCCAACTCCATTAACAAGCCAAGTTTGA

Protein Analysis

436

Amino Acids

48.5

Weight (kDa)

5.87

Isoelectric Point (pI)

38.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 5 - 420 1e-85 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017651)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g24660
malus_domestica MD14G1155800.v1.1
pyrus_communis pycom14g12950
rosa_chinensis RchiOBHm_Chr4g0431761
rosa_laevigata RLG00000006892
rosa_multiflora Rmu_sc0001459.1_g000022
rosa_roxburghii Rroxscaffold_5G00373160
rosa_rugosa Rorug04G0252200
rosa_samantha Rh4AG308600 Rh4BG316400
rosa_wichuraiana Rw4G026770 Rw4G026840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1166
Acc36I ACCTGC 1 cut(s) 1074
Acc65I GGTACC 1 cut(s) 889
AccB1I GGYRCC 1 cut(s) 889
AccI GTMKAC 1 cut(s) 1095
AciI CCGC 6 cut(s) 125, 602, 674, 765, 845, 1027
AclWI GGATC 1 cut(s) 1205
AcsI RAATTY 4 cut(s) 279, 321, 345, 391
AcuI CTGAAG 1 cut(s) 329
AfaI GTAC 6 cut(s) 119, 400, 414, 787, 829, 891
AfiI CCNNNNNNNGG 2 cut(s) 233, 645
AgsI TTSAA 1 cut(s) 1039
AjnI CCWGG 1 cut(s) 830
AjuI GAANNNNNNNTTGG 2 cut(s) 1092, 1124
AluBI AGCT 7 cut(s) 16, 37, 103, 423, 695, 1077, 1205
AluI AGCT 7 cut(s) 16, 37, 103, 423, 695, 1077, 1205
Alw21I GWGCWC 2 cut(s) 39, 739
Alw26I GTCTC 1 cut(s) 167
AlwI GGATC 1 cut(s) 1205
AoxI GGCC 4 cut(s) 522, 675, 939, 993
ApeKI GCWGC 6 cut(s) 13, 482, 515, 604, 1235, 1271
ApoI RAATTY 4 cut(s) 279, 321, 345, 391
ArsI GACNNNNNNTTYG 4 cut(s) 344, 376, 1194, 1226
Asp718I GGTACC 1 cut(s) 889
AspS9I GGNCC 2 cut(s) 352, 676
AsuHPI GGTGA 2 cut(s) 59, 596
AsuNHI GCTAGC 1 cut(s) 161
AvaII GGWCC 1 cut(s) 352
BaeI ACNNNNGTAYC 2 cut(s) 811, 844
BanI GGYRCC 1 cut(s) 889
BanII GRGCYC 1 cut(s) 39
Bbv12I GWGCWC 2 cut(s) 39, 739
BbvI GCAGC 6 cut(s) 25, 494, 502, 616, 1222, 1258
BccI CCATC 3 cut(s) 626, 1168, 1187
BciT130I CCWGG 1 cut(s) 832
BciVI GTATCC 1 cut(s) 976
BcoDI GTCTC 1 cut(s) 167
BfaI CTAG 3 cut(s) 162, 212, 1262
BfmI CTRYAG 1 cut(s) 6
BfuAI ACCTGC 1 cut(s) 1074
BfuI GTATCC 1 cut(s) 976
BisI GCNGC 9 cut(s) 14, 483, 516, 602, 605, 675, 765, 1236, 1272
BlsI GCNGC 9 cut(s) 15, 484, 517, 603, 606, 676, 766, 1237, 1273
BmcAI AGTACT 1 cut(s) 400
Bme1390I CCNGG 1 cut(s) 832
Bme18I GGWCC 1 cut(s) 352
BmgT120I GGNCC 2 cut(s) 352, 676
BmiI GGNNCC 2 cut(s) 891, 1088
BmrFI CCNGG 1 cut(s) 832
BmrI ACTGGG 2 cut(s) 520, 1085
BmsI GCATC 3 cut(s) 469, 649, 1014
BmtI GCTAGC 1 cut(s) 165
BmuI ACTGGG 2 cut(s) 520, 1085
BpmI CTGGAG 1 cut(s) 625
BpuEI CTTGAG 2 cut(s) 347, 1018
BsaJI CCNNGG 4 cut(s) 489, 519, 578, 1014
BsaWI WCCGGW 1 cut(s) 886
BsaXI ACNNNNNCTCC 2 cut(s) 71, 101
Bsc4I CCNNNNNNNGG 2 cut(s) 233, 645
Bse1I ACTGG 3 cut(s) 515, 1091, 1124
Bse3DI GCAATG 2 cut(s) 913, 1058
BseBI CCWGG 1 cut(s) 832
BseDI CCNNGG 4 cut(s) 489, 519, 578, 1014
BseGI GGATG 4 cut(s) 120, 176, 840, 1198
BseLI CCNNNNNNNGG 2 cut(s) 233, 645
BseMI GCAATG 2 cut(s) 913, 1058
BseMII CTCAG 1 cut(s) 546
BseNI ACTGG 3 cut(s) 515, 1091, 1124
BseRI GAGGAG 3 cut(s) 40, 99, 1268
BseXI GCAGC 6 cut(s) 25, 494, 502, 616, 1222, 1258
BsgI GTGCAG 2 cut(s) 32, 1102
BshFI GGCC 4 cut(s) 524, 677, 941, 995
BshNI GGYRCC 1 cut(s) 889
BsiHKAI GWGCWC 2 cut(s) 39, 739
BsiSI CCGG 3 cut(s) 234, 608, 887
BslI CCNNNNNNNGG 2 cut(s) 233, 645
BsmAI GTCTC 1 cut(s) 167
BsnI GGCC 4 cut(s) 524, 677, 941, 995
Bsp1286I GDGCHC 2 cut(s) 39, 739
Bsp1407I TGTACA 1 cut(s) 412
Bsp143I GATC 3 cut(s) 97, 247, 1197
Bsp19I CCATGG 2 cut(s) 489, 1014
BspACI CCGC 6 cut(s) 125, 602, 674, 765, 845, 1027
BspANI GGCC 4 cut(s) 524, 677, 941, 995
BspCNI CTCAG 1 cut(s) 545
BspLI GGNNCC 2 cut(s) 891, 1088
BspMI ACCTGC 1 cut(s) 1074
BspOI GCTAGC 1 cut(s) 165
BspPI GGATC 1 cut(s) 1205
BspQI GCTCTTC 1 cut(s) 1215
BspT107I GGYRCC 1 cut(s) 889
BsrDI GCAATG 2 cut(s) 913, 1058
BsrGI TGTACA 1 cut(s) 412
BsrI ACTGG 3 cut(s) 515, 1091, 1124
BssECI CCNNGG 4 cut(s) 489, 519, 578, 1014
BssMI GATC 3 cut(s) 97, 247, 1197
BssNAI GTATAC 1 cut(s) 1096
BssT1I CCWWGG 4 cut(s) 489, 519, 578, 1014
Bst1107I GTATAC 1 cut(s) 1096
Bst2UI CCWGG 1 cut(s) 832
Bst4CI ACNGT 2 cut(s) 10, 908
Bst6I CTCTTC 1 cut(s) 1215
BstAPI GCANNNNNTGC 3 cut(s) 761, 1057, 1271
BstAUI TGTACA 1 cut(s) 412
BstC8I GCNNGC 2 cut(s) 163, 1029
BstDEI CTNAG 3 cut(s) 71, 289, 532
BstDSI CCRYGG 2 cut(s) 489, 1014
BstENI CCTNNNNNAGG 1 cut(s) 643
BstF5I GGATG 4 cut(s) 120, 176, 840, 1198
BstKTI GATC 3 cut(s) 100, 250, 1200
BstMAI GTCTC 1 cut(s) 167
BstMBI GATC 3 cut(s) 97, 247, 1197
BstMWI GCNNNNNNNGC 7 cut(s) 521, 683, 692, 761, 770, 1057, 1271
BstNI CCWGG 1 cut(s) 832
BstNSI RCATGY 1 cut(s) 463
BstSCI CCNGG 1 cut(s) 830
BstSFI CTRYAG 1 cut(s) 6
BstV1I GCAGC 6 cut(s) 25, 494, 502, 616, 1222, 1258
BstZ17I GTATAC 1 cut(s) 1096
BsuI GTATCC 1 cut(s) 976
BsuRI GGCC 4 cut(s) 524, 677, 941, 995
BtgI CCRYGG 2 cut(s) 489, 1014
BtgZI GCGATG 1 cut(s) 492
BtsCI GGATG 4 cut(s) 120, 176, 840, 1198
BtsI GCAGTG 2 cut(s) 156, 383
BtsIMutI CAGTG 4 cut(s) 15, 156, 383, 1131
BveI ACCTGC 1 cut(s) 1074
Cac8I GCNNGC 2 cut(s) 163, 1029
Cfr13I GGNCC 2 cut(s) 352, 676
Csp6I GTAC 6 cut(s) 118, 399, 413, 786, 828, 890
CviAII CATG 5 cut(s) 341, 460, 490, 1015, 1231
CviQI GTAC 6 cut(s) 118, 399, 413, 786, 828, 890
DdeI CTNAG 3 cut(s) 71, 289, 532
DpnI GATC 3 cut(s) 99, 249, 1199
DpnII GATC 3 cut(s) 97, 247, 1197
Eam1104I CTCTTC 1 cut(s) 1215
EarI CTCTTC 1 cut(s) 1215
Ecl136II GAGCTC 1 cut(s) 37
Eco130I CCWWGG 4 cut(s) 489, 519, 578, 1014
Eco147I AGGCCT 2 cut(s) 524, 941
Eco24I GRGCYC 1 cut(s) 39
Eco47I GGWCC 1 cut(s) 352
Eco53kI GAGCTC 1 cut(s) 37
Eco57I CTGAAG 1 cut(s) 329
EcoICRI GAGCTC 1 cut(s) 37
EcoNI CCTNNNNNAGG 1 cut(s) 643
EcoRII CCWGG 1 cut(s) 830
EcoT14I CCWWGG 4 cut(s) 489, 519, 578, 1014
EcoT38I GRGCYC 1 cut(s) 39
ErhI CCWWGG 4 cut(s) 489, 519, 578, 1014
FaeI CATG 5 cut(s) 344, 463, 493, 1018, 1234
FatI CATG 5 cut(s) 340, 459, 489, 1014, 1230
FauI CCCGC 2 cut(s) 132, 1020
FauNDI CATATG 1 cut(s) 964
FblI GTMKAC 1 cut(s) 1095
Fnu4HI GCNGC 9 cut(s) 14, 483, 516, 602, 605, 675, 765, 1236, 1272
FokI GGATG 4 cut(s) 107, 163, 847, 1205
FriOI GRGCYC 1 cut(s) 39
Fsp4HI GCNGC 9 cut(s) 14, 483, 516, 602, 605, 675, 765, 1236, 1272
FspBI CTAG 3 cut(s) 162, 212, 1262
GluI GCNGC 9 cut(s) 14, 483, 516, 602, 605, 675, 765, 1236, 1272
GsuI CTGGAG 1 cut(s) 625
HaeIII GGCC 4 cut(s) 524, 677, 941, 995
HapII CCGG 3 cut(s) 234, 608, 887
Hin1II CATG 5 cut(s) 344, 463, 493, 1018, 1234
HincII GTYRAC 1 cut(s) 820
HindII GTYRAC 1 cut(s) 820
HindIII AAGCTT 1 cut(s) 1203
HinfI GANTC 2 cut(s) 331, 838
HpaI GTTAAC 1 cut(s) 820
HpaII CCGG 3 cut(s) 234, 608, 887
HphI GGTGA 2 cut(s) 59, 596
Hpy166II GTNNAC 3 cut(s) 539, 820, 1096
Hpy188I TCNGA 5 cut(s) 205, 319, 336, 949, 1173
Hpy188III TCNNGA 7 cut(s) 30, 251, 326, 622, 642, 1151, 1217
Hpy8I GTNNAC 3 cut(s) 539, 820, 1096
Hpy99I CGWCG 1 cut(s) 275
HpyAV CCTTC 2 cut(s) 639, 833
HpyCH4III ACNGT 2 cut(s) 10, 908
HpyF10VI GCNNNNNNNGC 7 cut(s) 521, 683, 692, 761, 770, 1057, 1271
HpyF3I CTNAG 3 cut(s) 71, 289, 532
Hsp92II CATG 5 cut(s) 344, 463, 493, 1018, 1234
KpnI GGTACC 1 cut(s) 893
KspAI GTTAAC 1 cut(s) 820
Kzo9I GATC 3 cut(s) 97, 247, 1197
LguI GCTCTTC 1 cut(s) 1215
Lsp1109I GCAGC 6 cut(s) 25, 494, 502, 616, 1222, 1258
LweI GCATC 3 cut(s) 469, 649, 1014
MaeI CTAG 3 cut(s) 162, 212, 1262
MaeIII GTNAC 5 cut(s) 462, 584, 866, 1210, 1257
MalI GATC 3 cut(s) 99, 249, 1199
MboI GATC 3 cut(s) 97, 247, 1197
MboII GAAGA 3 cut(s) 176, 1033, 1232
MfeI CAATTG 1 cut(s) 1066
MhlI GDGCHC 2 cut(s) 39, 739
MmeI TCCRAC 1 cut(s) 1307
MseI TTAA 5 cut(s) 449, 747, 819, 969, 1292
MspI CCGG 3 cut(s) 234, 608, 887
MspR9I CCNGG 1 cut(s) 832
MunI CAATTG 1 cut(s) 1066
MvaI CCWGG 1 cut(s) 832
MwoI GCNNNNNNNGC 7 cut(s) 521, 683, 692, 761, 770, 1057, 1271
NcoI CCATGG 2 cut(s) 489, 1014
NdeI CATATG 1 cut(s) 964
NdeII GATC 3 cut(s) 97, 247, 1197
NheI GCTAGC 1 cut(s) 161
NlaIII CATG 5 cut(s) 344, 463, 493, 1018, 1234
NlaIV GGNNCC 2 cut(s) 891, 1088
NmuCI GTSAC 3 cut(s) 462, 584, 1210
NspI RCATGY 1 cut(s) 463
PceI AGGCCT 2 cut(s) 524, 941
PciSI GCTCTTC 1 cut(s) 1215
PcsI WCGNNNNNNNCGW 1 cut(s) 267
PfeI GAWTC 2 cut(s) 331, 838
PkrI GCNGC 9 cut(s) 15, 484, 517, 603, 606, 676, 766, 1237, 1273
PsiI TTATAA 1 cut(s) 1166
Psp124BI GAGCTC 1 cut(s) 39
Psp6I CCWGG 1 cut(s) 830
PspGI CCWGG 1 cut(s) 830
PspN4I GGNNCC 2 cut(s) 891, 1088
PspPI GGNCC 2 cut(s) 352, 676
RsaI GTAC 6 cut(s) 119, 400, 414, 787, 829, 891
RsaNI GTAC 6 cut(s) 118, 399, 413, 786, 828, 890
SacI GAGCTC 1 cut(s) 39
SapI GCTCTTC 1 cut(s) 1215
SaqAI TTAA 5 cut(s) 449, 747, 819, 969, 1292
SatI GCNGC 9 cut(s) 14, 483, 516, 602, 605, 675, 765, 1236, 1272
Sau3AI GATC 3 cut(s) 97, 247, 1197
Sau96I GGNCC 2 cut(s) 352, 676
ScaI AGTACT 1 cut(s) 400
ScrFI CCNGG 1 cut(s) 832
SduI GDGCHC 2 cut(s) 39, 739
SfaNI GCATC 3 cut(s) 469, 649, 1014
SfcI CTRYAG 1 cut(s) 6
SinI GGWCC 1 cut(s) 352
SmlI CTYRAG 2 cut(s) 326, 997
SmoI CTYRAG 2 cut(s) 326, 997
SseBI AGGCCT 2 cut(s) 524, 941
SsiI CCGC 6 cut(s) 125, 602, 674, 765, 845, 1027
SspI AATATT 1 cut(s) 614
SspMI CTAG 3 cut(s) 162, 212, 1262
SstI GAGCTC 1 cut(s) 39
StuI AGGCCT 2 cut(s) 524, 941
StyD4I CCNGG 1 cut(s) 830
StyI CCWWGG 4 cut(s) 489, 519, 578, 1014
TaaI ACNGT 2 cut(s) 10, 908
TaqI TCGA 6 cut(s) 18, 96, 261, 569, 657, 1200
TatI WGTACW 3 cut(s) 117, 398, 412
TauI GCSGC 3 cut(s) 604, 677, 767
TfiI GAWTC 2 cut(s) 331, 838
Tru1I TTAA 5 cut(s) 449, 747, 819, 969, 1292
Tru9I TTAA 5 cut(s) 449, 747, 819, 969, 1292
TscAI CASTG 4 cut(s) 15, 163, 383, 1131
TseFI GTSAC 3 cut(s) 462, 584, 1210
TseI GCWGC 6 cut(s) 13, 482, 515, 604, 1235, 1271
Tsp45I GTSAC 3 cut(s) 462, 584, 1210
TspDTI ATGAA 3 cut(s) 357, 768, 947
TspRI CASTG 4 cut(s) 15, 163, 383, 1131
VpaK11BI GGWCC 1 cut(s) 352
XagI CCTNNNNNAGG 1 cut(s) 643
XapI RAATTY 4 cut(s) 279, 321, 345, 391
XceI RCATGY 1 cut(s) 463
XmiI GTMKAC 1 cut(s) 1095
XspI CTAG 3 cut(s) 162, 212, 1262
ZrmI AGTACT 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.