FvH4_4g25810

SOUL heme-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0017289
Physical Location & Seq
Reverse (-)
27472821 .. 27473859
1039 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g25810.t1

Sequence Viewer

Length: 654 bp
ATGGGACAGACCACTAATCATCCAGTAATGGAGAGGCTATTCATACTCATAGTTATATGCTACCTCTGTGGTGGTGTAGTTGAACTCTCTGGTCAAGCTGTTGAGTCACCTCAGTACAGAGTGGTGCATTCAGAATCAGATTTTGAGGTCAGACTCTACAGAGAATCCTCATGGATGTCAGCTCAAGTCCTAGAAACAACTTCATTCGAAAAGGCCACTAAAGATGGCTTTCACAGGTTGTATCAGTACGTTCATGGCGATAACCTTAACTCATCCCAGATTACCATCACGGCTCCGGTGTTAACAAGCATTATCCCATCTGTGCATGGACAGGAATACTATGTAAGGTTGTATCTGCCTGCCAAATATGAAAGAACACCACCACAGCCTTTCCCTGAACTGAATTTGCAGTTTGATAAGCGGAGAAGTCGTTGCATAGCAGCCAGAAAGTTTCCGGGGTTTGCTAAGGATGATGACATTAATGAAGAACTCGACACACTTGTGAGCAGCCTAAACAAGCACTTGAATGGAAAACCAGGAATCCTGACAGAAAAGAGTGCTTATGCAATCGCCCAATACAATGCTTCACATCATGTTTCTGGGCGCTTGAACGAAGTGTGGATGGATCTCTCTGGATTAACTATAGACTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SOUL

Protein Analysis

218

Amino Acids

24.61

Weight (kDa)

6.06

Isoelectric Point (pI)

43.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SOUL PF04832 34 - 208 9.2e-46 SOUL heme-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g25810
malus_domestica MD13G1096900.v1.1
prunus_persica Prupe.1G248800_v2.0.a1
pyrus_communis pycom13g08460
rosa_chinensis RchiOBHm_Chr4g0433261
rosa_laevigata RLG00000006770
rosa_multiflora Rmu_sc0022950.1_g000001
rosa_roxburghii Rroxscaffold_5G00374820
rosa_rugosa Rorug04G0267500
rosa_samantha Rh4AG322000 Rh4BG329400 Rh4CG344700 Rh4DG326100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 421
AclWI GGATC 1 cut(s) 633
AcsI RAATTY 1 cut(s) 403
AfaI GTAC 2 cut(s) 116, 248
AgsI TTSAA 3 cut(s) 83, 526, 610
AjnI CCWGG 1 cut(s) 535
AleI CACNNNNGTG 1 cut(s) 500
AluBI AGCT 2 cut(s) 98, 182
AluI AGCT 2 cut(s) 98, 182
AlwI GGATC 1 cut(s) 633
AoxI GGCC 1 cut(s) 213
ApeKI GCWGC 2 cut(s) 440, 507
ApoI RAATTY 1 cut(s) 403
AseI ATTAAT 1 cut(s) 480
AspLEI GCGC 1 cut(s) 606
AsuC2I CCSGG 1 cut(s) 456
AsuHPI GGTGA 1 cut(s) 99
AsuII TTCGAA 1 cut(s) 207
BbvI GCAGC 2 cut(s) 452, 519
BccI CCATC 4 cut(s) 218, 293, 325, 616
BceAI ACGGC 1 cut(s) 306
BciT130I CCWGG 1 cut(s) 537
BcnI CCSGG 1 cut(s) 456
BfaI CTAG 1 cut(s) 191
BfmI CTRYAG 2 cut(s) 157, 642
BfoI RGCGCY 1 cut(s) 607
BisI GCNGC 2 cut(s) 441, 508
BlsI GCNGC 2 cut(s) 442, 509
Bme1390I CCNGG 2 cut(s) 456, 537
BmiI GGNNCC 1 cut(s) 294
BmrFI CCNGG 2 cut(s) 456, 537
Bpu10I CCTNAGC 1 cut(s) 465
Bpu14I TTCGAA 1 cut(s) 207
BpuEI CTTGAG 1 cut(s) 168
BpuMI CCSGG 1 cut(s) 456
BsaBI GATNNNNATC 1 cut(s) 284
BsaJI CCNNGG 1 cut(s) 455
BsaWI WCCGGW 1 cut(s) 295
BsaXI ACNNNNNCTCC 2 cut(s) 415, 445
Bse1I ACTGG 1 cut(s) 23
Bse8I GATNNNNATC 1 cut(s) 284
BseBI CCWGG 1 cut(s) 537
BseDI CCNNGG 1 cut(s) 455
BseGI GGATG 5 cut(s) 19, 180, 272, 475, 627
BseJI GATNNNNATC 1 cut(s) 284
BseMII CTCAG 1 cut(s) 125
BseNI ACTGG 1 cut(s) 23
BseXI GCAGC 2 cut(s) 452, 519
BshFI GGCC 1 cut(s) 215
BsiSI CCGG 2 cut(s) 296, 455
BslFI GGGAC 1 cut(s) 18
BsmFI GGGAC 1 cut(s) 18
BsmI GAATGC 1 cut(s) 127
BsnI GGCC 1 cut(s) 215
Bsp119I TTCGAA 1 cut(s) 207
Bsp143I GATC 1 cut(s) 625
BspACI CCGC 1 cut(s) 421
BspANI GGCC 1 cut(s) 215
BspCNI CTCAG 1 cut(s) 124
BspLI GGNNCC 1 cut(s) 294
BspPI GGATC 1 cut(s) 633
BspT104I TTCGAA 1 cut(s) 207
BsrI ACTGG 1 cut(s) 23
BssECI CCNNGG 1 cut(s) 455
BssMI GATC 1 cut(s) 625
Bst2UI CCWGG 1 cut(s) 537
BstBI TTCGAA 1 cut(s) 207
BstC8I GCNNGC 1 cut(s) 360
BstDEI CTNAG 2 cut(s) 111, 465
BstF5I GGATG 5 cut(s) 19, 180, 272, 475, 627
BstH2I RGCGCY 1 cut(s) 607
BstHHI GCGC 1 cut(s) 606
BstKTI GATC 1 cut(s) 628
BstMBI GATC 1 cut(s) 625
BstNI CCWGG 1 cut(s) 537
BstSCI CCNGG 2 cut(s) 454, 535
BstSFI CTRYAG 2 cut(s) 157, 642
BstV1I GCAGC 2 cut(s) 452, 519
BstX2I RGATCY 1 cut(s) 625
BstYI RGATCY 1 cut(s) 625
BsuRI GGCC 1 cut(s) 215
BtsCI GGATG 5 cut(s) 19, 180, 272, 475, 627
Cac8I GCNNGC 1 cut(s) 360
CfoI GCGC 1 cut(s) 606
Csp6I GTAC 2 cut(s) 115, 247
CviAII CATG 4 cut(s) 171, 254, 326, 593
CviJI RGCY 9 cut(s) 37, 98, 182, 215, 228, 293, 388, 443, 510
CviKI_1 RGCY 9 cut(s) 37, 98, 182, 215, 228, 293, 388, 443, 510
CviQI GTAC 2 cut(s) 115, 247
DdeI CTNAG 2 cut(s) 111, 465
DpnI GATC 1 cut(s) 627
DpnII GATC 1 cut(s) 625
EcoRII CCWGG 1 cut(s) 535
FaeI CATG 4 cut(s) 174, 257, 329, 596
FaqI GGGAC 1 cut(s) 18
FatI CATG 4 cut(s) 170, 253, 325, 592
Fnu4HI GCNGC 2 cut(s) 441, 508
FokI GGATG 5 cut(s) 6, 187, 259, 482, 634
Fsp4HI GCNGC 2 cut(s) 441, 508
FspBI CTAG 1 cut(s) 191
GlaI GCGC 1 cut(s) 605
GluI GCNGC 2 cut(s) 441, 508
HaeII RGCGCY 1 cut(s) 607
HaeIII GGCC 1 cut(s) 215
HapII CCGG 2 cut(s) 296, 455
HhaI GCGC 1 cut(s) 606
Hin1II CATG 4 cut(s) 174, 257, 329, 596
Hin6I GCGC 1 cut(s) 604
HinP1I GCGC 1 cut(s) 604
HincII GTYRAC 1 cut(s) 303
HindII GTYRAC 1 cut(s) 303
HinfI GANTC 5 cut(s) 104, 134, 153, 164, 540
HpaI GTTAAC 1 cut(s) 303
HpaII CCGG 2 cut(s) 296, 455
HphI GGTGA 1 cut(s) 99
Hpy166II GTNNAC 1 cut(s) 303
Hpy188I TCNGA 3 cut(s) 133, 139, 152
Hpy188III TCNNGA 2 cut(s) 544, 633
Hpy8I GTNNAC 1 cut(s) 303
HpyCH4IV ACGT 1 cut(s) 249
HpyCH4V TGCA 5 cut(s) 127, 325, 409, 435, 566
HpyF3I CTNAG 2 cut(s) 111, 465
HpySE526I ACGT 1 cut(s) 249
Hsp92II CATG 4 cut(s) 174, 257, 329, 596
HspAI GCGC 1 cut(s) 604
KspAI GTTAAC 1 cut(s) 303
Kzo9I GATC 1 cut(s) 625
LmnI GCTCC 1 cut(s) 298
Lsp1109I GCAGC 2 cut(s) 452, 519
MaeI CTAG 1 cut(s) 191
MaeII ACGT 1 cut(s) 249
MaeIII GTNAC 1 cut(s) 105
MalI GATC 1 cut(s) 627
MboI GATC 1 cut(s) 625
MboII GAAGA 1 cut(s) 497
MflI RGATCY 1 cut(s) 625
MluCI AATT 1 cut(s) 403
MlyI GAGTC 2 cut(s) 113, 147
MnlI CCTC 5 cut(s) 27, 74, 120, 139, 178
MseI TTAA 4 cut(s) 267, 302, 480, 638
MslI CAYNNNNRTG 2 cut(s) 500, 525
MspI CCGG 2 cut(s) 296, 455
MspR9I CCNGG 2 cut(s) 456, 537
Mva1269I GAATGC 1 cut(s) 127
MvaI CCWGG 1 cut(s) 537
NciI CCSGG 1 cut(s) 456
NdeII GATC 1 cut(s) 625
NlaIII CATG 4 cut(s) 174, 257, 329, 596
NlaIV GGNNCC 1 cut(s) 294
NmuCI GTSAC 1 cut(s) 105
NspV TTCGAA 1 cut(s) 207
OliI CACNNNNGTG 1 cut(s) 500
PcsI WCGNNNNNNNCGW 1 cut(s) 255
PctI GAATGC 1 cut(s) 127
PfeI GAWTC 3 cut(s) 134, 164, 540
PkrI GCNGC 2 cut(s) 442, 509
PleI GAGTC 2 cut(s) 112, 147
PpsI GAGTC 2 cut(s) 112, 147
PshBI ATTAAT 1 cut(s) 480
Psp6I CCWGG 1 cut(s) 535
PspGI CCWGG 1 cut(s) 535
PspN4I GGNNCC 1 cut(s) 294
PsuI RGATCY 1 cut(s) 625
RsaI GTAC 2 cut(s) 116, 248
RsaNI GTAC 2 cut(s) 115, 247
RseI CAYNNNNRTG 2 cut(s) 500, 525
SaqAI TTAA 4 cut(s) 267, 302, 480, 638
SatI GCNGC 2 cut(s) 441, 508
Sau3AI GATC 1 cut(s) 625
SchI GAGTC 2 cut(s) 113, 147
ScrFI CCNGG 2 cut(s) 456, 537
SetI ASST 9 cut(s) 66, 100, 112, 150, 184, 239, 252, 267, 350
SfcI CTRYAG 2 cut(s) 157, 642
SfuI TTCGAA 1 cut(s) 207
SmiMI CAYNNNNRTG 2 cut(s) 500, 525
SmlI CTYRAG 1 cut(s) 183
SmoI CTYRAG 1 cut(s) 183
Sse9I AATT 1 cut(s) 403
SsiI CCGC 1 cut(s) 421
SspMI CTAG 1 cut(s) 191
StyD4I CCNGG 2 cut(s) 454, 535
TaiI ACGT 1 cut(s) 252
TaqI TCGA 2 cut(s) 207, 492
TasI AATT 1 cut(s) 403
TatI WGTACW 1 cut(s) 114
TfiI GAWTC 3 cut(s) 134, 164, 540
Tru1I TTAA 4 cut(s) 267, 302, 480, 638
Tru9I TTAA 4 cut(s) 267, 302, 480, 638
TseFI GTSAC 1 cut(s) 105
TseI GCWGC 2 cut(s) 440, 507
Tsp45I GTSAC 1 cut(s) 105
TspDTI ATGAA 5 cut(s) 31, 192, 242, 384, 498
VspI ATTAAT 1 cut(s) 480
XapI RAATTY 1 cut(s) 403
XspI CTAG 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.