RchiOBHm_Chr4g0433261

SOUL heme-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0017289
Physical Location & Seq
Reverse (-)
57449664 .. 57450835
1172 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40178

Sequence Viewer

Length: 273 bp
ATGGGACAGAGCACTAATCATCAAATAATGGAGAGGCTATTCATGATCATGGTAATATGCTACCTCTGTGGTAGTATAGTTGAACTCTCTGGTCAAGCTGTCGAGTCGCCTCAATACAGAGTGGTGCATTCAGAATCAGACTTTGAGGTCAGACTTTACAGAGAATCCTCATGGATGTCAGCTCAAGTCCGAGAAACAACTTCATTCGAAAAAGCCACTAAAGATGGCTTTCACAGGTTCTCCAACACTGTTGTATCAGTACATTCATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SOUL

Protein Analysis

90

Amino Acids

10.42

Weight (kDa)

6.03

Isoelectric Point (pI)

30.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SOUL PF04832 34 - 80 2.6e-09 SOUL heme-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g25810
malus_domestica MD13G1096900.v1.1
prunus_persica Prupe.1G248800_v2.0.a1
pyrus_communis pycom13g08460
rosa_chinensis RchiOBHm_Chr4g0433261
rosa_laevigata RLG00000006770
rosa_multiflora Rmu_sc0022950.1_g000001
rosa_roxburghii Rroxscaffold_5G00374820
rosa_rugosa Rorug04G0267500
rosa_samantha Rh4AG322000 Rh4BG329400 Rh4CG344700 Rh4DG326100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 146
AfaI GTAC 1 cut(s) 261
AgsI TTSAA 1 cut(s) 83
AluBI AGCT 2 cut(s) 98, 182
AluI AGCT 2 cut(s) 98, 182
Alw21I GWGCWC 1 cut(s) 14
AsuII TTCGAA 1 cut(s) 207
BaeI ACNNNNGTAYC 2 cut(s) 237, 270
Bbv12I GWGCWC 1 cut(s) 14
BccI CCATC 1 cut(s) 218
BclI TGATCA 1 cut(s) 45
Bpu14I TTCGAA 1 cut(s) 207
BpuEI CTTGAG 1 cut(s) 168
BsaXI ACNNNNNCTCC 2 cut(s) 224, 254
BseGI GGATG 1 cut(s) 180
BsiHKAI GWGCWC 1 cut(s) 14
BslFI GGGAC 1 cut(s) 18
BsmFI GGGAC 1 cut(s) 18
BsmI GAATGC 1 cut(s) 127
Bsp119I TTCGAA 1 cut(s) 207
Bsp1286I GDGCHC 1 cut(s) 14
Bsp143I GATC 1 cut(s) 45
BspHI TCATGA 1 cut(s) 42
BspT104I TTCGAA 1 cut(s) 207
BssMI GATC 1 cut(s) 45
Bst4CI ACNGT 1 cut(s) 250
BstBI TTCGAA 1 cut(s) 207
BstF5I GGATG 1 cut(s) 180
BstKTI GATC 1 cut(s) 48
BstMBI GATC 1 cut(s) 45
BtsCI GGATG 1 cut(s) 180
BtsIMutI CAGTG 1 cut(s) 246
CciI TCATGA 1 cut(s) 42
Csp6I GTAC 1 cut(s) 260
CviAII CATG 4 cut(s) 43, 49, 171, 267
CviJI RGCY 5 cut(s) 37, 98, 182, 215, 228
CviKI_1 RGCY 5 cut(s) 37, 98, 182, 215, 228
CviQI GTAC 1 cut(s) 260
DpnI GATC 1 cut(s) 47
DpnII GATC 1 cut(s) 45
DrdI GACNNNNNNGTC 1 cut(s) 146
DseDI GACNNNNNNGTC 1 cut(s) 146
FaeI CATG 4 cut(s) 46, 52, 174, 270
FaiI YATR 6 cut(s) 44, 50, 58, 77, 172, 268
FaqI GGGAC 1 cut(s) 18
FatI CATG 4 cut(s) 42, 48, 170, 266
FbaI TGATCA 1 cut(s) 45
FokI GGATG 1 cut(s) 187
Hin1II CATG 4 cut(s) 46, 52, 174, 270
HinfI GANTC 3 cut(s) 104, 134, 164
Hpy188I TCNGA 4 cut(s) 133, 139, 152, 191
Hpy188III TCNNGA 1 cut(s) 43
HpyCH4III ACNGT 1 cut(s) 250
HpyCH4V TGCA 1 cut(s) 127
Hsp92II CATG 4 cut(s) 46, 52, 174, 270
Ksp22I TGATCA 1 cut(s) 45
Kzo9I GATC 1 cut(s) 45
LpnPI CCDG 2 cut(s) 75, 220
MalI GATC 1 cut(s) 47
MboI GATC 1 cut(s) 45
MhlI GDGCHC 1 cut(s) 14
MlyI GAGTC 1 cut(s) 113
MmeI TCCRAC 1 cut(s) 267
MnlI CCTC 5 cut(s) 27, 74, 120, 139, 178
MslI CAYNNNNRTG 1 cut(s) 47
Mva1269I GAATGC 1 cut(s) 127
NdeII GATC 1 cut(s) 45
NlaIII CATG 4 cut(s) 46, 52, 174, 270
NspV TTCGAA 1 cut(s) 207
PagI TCATGA 1 cut(s) 42
PctI GAATGC 1 cut(s) 127
PfeI GAWTC 2 cut(s) 134, 164
PleI GAGTC 1 cut(s) 112
PpsI GAGTC 1 cut(s) 112
RsaI GTAC 1 cut(s) 261
RsaNI GTAC 1 cut(s) 260
RseI CAYNNNNRTG 1 cut(s) 47
Sau3AI GATC 1 cut(s) 45
SchI GAGTC 1 cut(s) 113
SduI GDGCHC 1 cut(s) 14
SetI ASST 5 cut(s) 66, 100, 150, 184, 239
SfuI TTCGAA 1 cut(s) 207
SgeI CNNG 9 cut(s) 55, 61, 102, 107, 115, 183, 197, 203, 247
SmiMI CAYNNNNRTG 1 cut(s) 47
SmlI CTYRAG 1 cut(s) 183
SmoI CTYRAG 1 cut(s) 183
TaaI ACNGT 1 cut(s) 250
TaqI TCGA 2 cut(s) 102, 207
TatI WGTACW 1 cut(s) 259
TfiI GAWTC 2 cut(s) 134, 164
TscAI CASTG 1 cut(s) 253
TspDTI ATGAA 3 cut(s) 31, 192, 255
TspRI CASTG 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.