pycom13g08460

SOUL heme-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0017289
Physical Location & Seq
Reverse (-)
5636984 .. 5637806
823 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g08460.1

Sequence Viewer

Length: 639 bp
ATGGAAAAGCCAATGTTGAACTTGGTTATAGTAATATGTTGTTACCTTTGTAGCAGCAAACTTGTACTGTCCGGTCATGCTATCGAATCGCCTCCCTACAGGGTGGTGCACTCTGAATCGGAGTTTGAGCTCAGACTCTACAAAGAATCCTCATGGATGTCTGCTCTCGTCCAAGACACAACCTCTTTCGAAAAAGCCACCAAAGACGGATTTCACAGGCTGTATCAATACATCCATGGTGCTAACCTCAACTCTTCCGAAATTACCATAACGGCTCCTGTCTTAACAAGCATTGTGCCGTCAGTGCACGGGCCGGCAGAATACTACGTGAAGTTGTATCTGCCTGCCAAATATGAAGGAACACCTCCACAGCCCTCGGCCGAACTGAATTTGCAGTTGGATAATTGGAGAAGCCATTGCATAGCAGTCAGAAAGTTTCCAGGGTTTGCCAAAGATGACCGTTTTTCCAAAGAATTTGAAACTCTTGTGGACAGCCTAAATAAGCACTTAATTGGAAAGCCAGCGATTCTGGCAGCTGAGAGTCCTTATGCCATTGCTCAGTACAATGCTTCGTATCACCTTTCTGGGCGCCTAAACGAAGTGTGGATGGATCTTTCAGGAATCACTGCTGATTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SOUL

Protein Analysis

213

Amino Acids

23.8

Weight (kDa)

6.05

Isoelectric Point (pI)

44.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SOUL PF04832 28 - 203 2.6e-44 SOUL heme-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g25810
malus_domestica MD13G1096900.v1.1
prunus_persica Prupe.1G248800_v2.0.a1
pyrus_communis pycom13g08460
rosa_chinensis RchiOBHm_Chr4g0433261
rosa_laevigata RLG00000006770
rosa_multiflora Rmu_sc0022950.1_g000001
rosa_roxburghii Rroxscaffold_5G00374820
rosa_rugosa Rorug04G0267500
rosa_samantha Rh4AG322000 Rh4BG329400 Rh4CG344700 Rh4DG326100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 588
AclWI GGATC 1 cut(s) 618
AcoI YGGCCR 1 cut(s) 378
AcsI RAATTY 2 cut(s) 388, 473
AcyI GRCGYC 1 cut(s) 589
AfaI GTAC 2 cut(s) 66, 563
AgsI TTSAA 2 cut(s) 19, 479
AjnI CCWGG 1 cut(s) 439
AjuI GAANNNNNNNTTGG 2 cut(s) 380, 412
AluBI AGCT 2 cut(s) 130, 536
AluI AGCT 2 cut(s) 130, 536
Alw21I GWGCWC 3 cut(s) 111, 132, 309
Alw44I GTGCAC 2 cut(s) 107, 305
AlwI GGATC 1 cut(s) 618
AoxI GGCC 2 cut(s) 311, 378
ApaLI GTGCAC 2 cut(s) 107, 305
ApeKI GCWGC 2 cut(s) 54, 533
ApoI RAATTY 2 cut(s) 388, 473
AspLEI GCGC 1 cut(s) 591
AspS9I GGNCC 1 cut(s) 311
AsuHPI GGTGA 1 cut(s) 569
AsuII TTCGAA 1 cut(s) 189
BaeGI GKGCMC 2 cut(s) 111, 309
BanI GGYRCC 1 cut(s) 588
BanII GRGCYC 1 cut(s) 132
Bbv12I GWGCWC 3 cut(s) 111, 132, 309
BbvI GCAGC 2 cut(s) 66, 545
BccI CCATC 1 cut(s) 601
BceAI ACGGC 2 cut(s) 283, 288
BciT130I CCWGG 1 cut(s) 441
BfmI CTRYAG 1 cut(s) 97
BfoI RGCGCY 1 cut(s) 592
BisI GCNGC 2 cut(s) 55, 534
BlsI GCNGC 2 cut(s) 56, 535
Bme1390I CCNGG 1 cut(s) 441
BmgT120I GGNCC 1 cut(s) 311
BmiI GGNNCC 2 cut(s) 276, 590
BmrFI CCNGG 1 cut(s) 441
Bpu14I TTCGAA 1 cut(s) 189
BsaAI YACGTR 1 cut(s) 328
BsaHI GRCGYC 1 cut(s) 589
BsaJI CCNNGG 3 cut(s) 235, 375, 440
BsaWI WCCGGW 1 cut(s) 71
Bse118I RCCGGY 1 cut(s) 313
Bse3DI GCAATG 2 cut(s) 415, 552
BseBI CCWGG 1 cut(s) 441
BseDI CCNNGG 3 cut(s) 235, 375, 440
BseGI GGATG 3 cut(s) 162, 231, 612
BseMI GCAATG 2 cut(s) 415, 552
BseMII CTCAG 3 cut(s) 145, 528, 572
BseSI GKGCMC 2 cut(s) 111, 309
BseX3I CGGCCG 1 cut(s) 378
BseXI GCAGC 2 cut(s) 66, 545
Bsh1285I CGRYCG 1 cut(s) 381
BshFI GGCC 2 cut(s) 313, 380
BshNI GGYRCC 1 cut(s) 588
BsiEI CGRYCG 1 cut(s) 381
BsiHKAI GWGCWC 3 cut(s) 111, 132, 309
BsiSI CCGG 2 cut(s) 72, 314
BsnI GGCC 2 cut(s) 313, 380
Bsp119I TTCGAA 1 cut(s) 189
Bsp1286I GDGCHC 3 cut(s) 111, 132, 309
Bsp143I GATC 1 cut(s) 610
Bsp19I CCATGG 1 cut(s) 235
BspANI GGCC 2 cut(s) 313, 380
BspCNI CTCAG 3 cut(s) 144, 529, 571
BspLI GGNNCC 2 cut(s) 276, 590
BspPI GGATC 1 cut(s) 618
BspT104I TTCGAA 1 cut(s) 189
BspT107I GGYRCC 1 cut(s) 588
BsrDI GCAATG 2 cut(s) 415, 552
BsrFI RCCGGY 1 cut(s) 313
BssAI RCCGGY 1 cut(s) 313
BssECI CCNNGG 3 cut(s) 235, 375, 440
BssMI GATC 1 cut(s) 610
BssNI GRCGYC 1 cut(s) 589
BssT1I CCWWGG 1 cut(s) 235
Bst2UI CCWGG 1 cut(s) 441
Bst4CI ACNGT 2 cut(s) 69, 461
Bst6I CTCTTC 1 cut(s) 259
BstACI GRCGYC 1 cut(s) 589
BstBAI YACGTR 1 cut(s) 328
BstBI TTCGAA 1 cut(s) 189
BstC8I GCNNGC 3 cut(s) 315, 345, 522
BstDEI CTNAG 3 cut(s) 131, 537, 558
BstDSI CCRYGG 1 cut(s) 235
BstF5I GGATG 3 cut(s) 162, 231, 612
BstH2I RGCGCY 1 cut(s) 592
BstHHI GCGC 1 cut(s) 591
BstKTI GATC 1 cut(s) 613
BstMBI GATC 1 cut(s) 610
BstMCI CGRYCG 1 cut(s) 381
BstMWI GCNNNNNNNGC 2 cut(s) 304, 530
BstNI CCWGG 1 cut(s) 441
BstSCI CCNGG 1 cut(s) 439
BstSFI CTRYAG 1 cut(s) 97
BstSLI GKGCMC 2 cut(s) 111, 309
BstV1I GCAGC 2 cut(s) 66, 545
BstX2I RGATCY 1 cut(s) 610
BstYI RGATCY 1 cut(s) 610
BstZI CGGCCG 1 cut(s) 378
BsuRI GGCC 2 cut(s) 313, 380
BtgI CCRYGG 1 cut(s) 235
BtsCI GGATG 3 cut(s) 162, 231, 612
BtsI GCAGTG 1 cut(s) 624
BtsIMutI CAGTG 2 cut(s) 309, 624
Cac8I GCNNGC 3 cut(s) 315, 345, 522
CfoI GCGC 1 cut(s) 591
Cfr10I RCCGGY 1 cut(s) 313
Cfr13I GGNCC 1 cut(s) 311
Csp6I GTAC 2 cut(s) 65, 562
CviAII CATG 3 cut(s) 77, 153, 236
CviQI GTAC 2 cut(s) 65, 562
DdeI CTNAG 3 cut(s) 131, 537, 558
DinI GGCGCC 1 cut(s) 590
DpnI GATC 1 cut(s) 612
DpnII GATC 1 cut(s) 610
EaeI YGGCCR 1 cut(s) 378
EagI CGGCCG 1 cut(s) 378
Eam1104I CTCTTC 1 cut(s) 259
EarI CTCTTC 1 cut(s) 259
Ecl136II GAGCTC 1 cut(s) 130
EclXI CGGCCG 1 cut(s) 378
Eco130I CCWWGG 1 cut(s) 235
Eco24I GRGCYC 1 cut(s) 132
Eco52I CGGCCG 1 cut(s) 378
Eco53kI GAGCTC 1 cut(s) 130
EcoICRI GAGCTC 1 cut(s) 130
EcoRII CCWGG 1 cut(s) 439
EcoT14I CCWWGG 1 cut(s) 235
EcoT38I GRGCYC 1 cut(s) 132
EgeI GGCGCC 1 cut(s) 590
EheI GGCGCC 1 cut(s) 590
ErhI CCWWGG 1 cut(s) 235
FaeI CATG 3 cut(s) 80, 156, 239
FaiI YATR 9 cut(s) 29, 37, 78, 154, 237, 269, 354, 422, 549
FatI CATG 3 cut(s) 76, 152, 235
Fnu4HI GCNGC 2 cut(s) 55, 534
FokI GGATG 3 cut(s) 169, 218, 619
FriOI GRGCYC 1 cut(s) 132
Fsp4HI GCNGC 2 cut(s) 55, 534
GlaI GCGC 1 cut(s) 590
GluI GCNGC 2 cut(s) 55, 534
HaeII RGCGCY 1 cut(s) 592
HaeIII GGCC 2 cut(s) 313, 380
HapII CCGG 2 cut(s) 72, 314
HhaI GCGC 1 cut(s) 591
Hin1I GRCGYC 1 cut(s) 589
Hin1II CATG 3 cut(s) 80, 156, 239
Hin6I GCGC 1 cut(s) 589
HinP1I GCGC 1 cut(s) 589
HinfI GANTC 7 cut(s) 86, 116, 135, 146, 526, 541, 621
HpaII CCGG 2 cut(s) 72, 314
HphI GGTGA 1 cut(s) 569
Hpy166II GTNNAC 3 cut(s) 109, 307, 490
Hpy188I TCNGA 5 cut(s) 115, 121, 134, 259, 431
Hpy188III TCNNGA 1 cut(s) 618
Hpy8I GTNNAC 3 cut(s) 109, 307, 490
HpyAV CCTTC 1 cut(s) 350
HpyCH4III ACNGT 2 cut(s) 69, 461
HpyCH4IV ACGT 1 cut(s) 327
HpyCH4V TGCA 4 cut(s) 109, 307, 394, 420
HpyF10VI GCNNNNNNNGC 2 cut(s) 304, 530
HpyF3I CTNAG 3 cut(s) 131, 537, 558
HpySE526I ACGT 1 cut(s) 327
Hsp92I GRCGYC 1 cut(s) 589
Hsp92II CATG 3 cut(s) 80, 156, 239
HspAI GCGC 1 cut(s) 589
KasI GGCGCC 1 cut(s) 588
KroI GCCGGC 1 cut(s) 313
KroNI GCCGGC 1 cut(s) 315
Kzo9I GATC 1 cut(s) 610
LmnI GCTCC 1 cut(s) 280
Lsp1109I GCAGC 2 cut(s) 66, 545
MaeII ACGT 1 cut(s) 327
MaeIII GTNAC 1 cut(s) 41
MalI GATC 1 cut(s) 612
MboI GATC 1 cut(s) 610
MboII GAAGA 1 cut(s) 246
MflI RGATCY 1 cut(s) 610
MhlI GDGCHC 3 cut(s) 111, 132, 309
MluCI AATT 5 cut(s) 261, 388, 403, 473, 510
Mly113I GGCGCC 1 cut(s) 589
MlyI GAGTC 2 cut(s) 129, 550
MmeI TCCRAC 1 cut(s) 378
MnlI CCTC 6 cut(s) 102, 160, 193, 257, 375, 385
MroNI GCCGGC 1 cut(s) 313
MseI TTAA 2 cut(s) 284, 509
MspA1I CMGCKG 1 cut(s) 536
MspI CCGG 2 cut(s) 72, 314
MspR9I CCNGG 1 cut(s) 441
MvaI CCWGG 1 cut(s) 441
MwoI GCNNNNNNNGC 2 cut(s) 304, 530
NaeI GCCGGC 1 cut(s) 315
NarI GGCGCC 1 cut(s) 589
NcoI CCATGG 1 cut(s) 235
NdeII GATC 1 cut(s) 610
NgoMIV GCCGGC 1 cut(s) 313
NlaIII CATG 3 cut(s) 80, 156, 239
NlaIV GGNNCC 2 cut(s) 276, 590
NmeAIII GCCGAG 1 cut(s) 356
NspV TTCGAA 1 cut(s) 189
PdiI GCCGGC 1 cut(s) 315
PfeI GAWTC 5 cut(s) 86, 116, 146, 526, 621
PkrI GCNGC 2 cut(s) 56, 535
PleI GAGTC 2 cut(s) 129, 549
PluTI GGCGCC 1 cut(s) 592
PpsI GAGTC 2 cut(s) 129, 549
Ppu21I YACGTR 1 cut(s) 328
Psp124BI GAGCTC 1 cut(s) 132
Psp6I CCWGG 1 cut(s) 439
PspGI CCWGG 1 cut(s) 439
PspN4I GGNNCC 2 cut(s) 276, 590
PspPI GGNCC 1 cut(s) 311
PsuI RGATCY 1 cut(s) 610
PvuII CAGCTG 1 cut(s) 536
RsaI GTAC 2 cut(s) 66, 563
RsaNI GTAC 2 cut(s) 65, 562
SacI GAGCTC 1 cut(s) 132
SaqAI TTAA 2 cut(s) 284, 509
SatI GCNGC 2 cut(s) 55, 534
Sau3AI GATC 1 cut(s) 610
Sau96I GGNCC 1 cut(s) 311
SchI GAGTC 2 cut(s) 129, 550
ScrFI CCNGG 1 cut(s) 441
SduI GDGCHC 3 cut(s) 111, 132, 309
SetI ASST 8 cut(s) 48, 132, 185, 249, 330, 367, 538, 582
SfcI CTRYAG 1 cut(s) 97
SfoI GGCGCC 1 cut(s) 590
SfuI TTCGAA 1 cut(s) 189
Sse9I AATT 5 cut(s) 261, 388, 403, 473, 510
SspDI GGCGCC 1 cut(s) 588
SstI GAGCTC 1 cut(s) 132
StyD4I CCNGG 1 cut(s) 439
StyI CCWWGG 1 cut(s) 235
TaaI ACNGT 2 cut(s) 69, 461
TaiI ACGT 1 cut(s) 330
TaqI TCGA 2 cut(s) 84, 189
TasI AATT 5 cut(s) 261, 388, 403, 473, 510
TatI WGTACW 2 cut(s) 64, 561
TfiI GAWTC 5 cut(s) 86, 116, 146, 526, 621
Tru1I TTAA 2 cut(s) 284, 509
Tru9I TTAA 2 cut(s) 284, 509
TscAI CASTG 2 cut(s) 309, 631
TseI GCWGC 2 cut(s) 54, 533
TspDTI ATGAA 1 cut(s) 369
TspGWI ACGGA 1 cut(s) 222
TspRI CASTG 2 cut(s) 309, 631
VneI GTGCAC 2 cut(s) 107, 305
XapI RAATTY 2 cut(s) 388, 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.