MD13G1096900.v1.1

SOUL heme-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0017289
Physical Location & Seq
Reverse (-)
6861703 .. 6862220
518 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1096900.v1.1.491

Sequence Viewer

Length: 498 bp
ATGGCTAATCGTTACCTTTTTCCTAATTTGGCGATTCTCATTGATATTGAAACTTTTTTTTTTTTTTTTTTGGTCAGGCTGTATCAATACATCCATGGTGCTAACCTCAACTCTTCAGAAATTAGCATCACGGCTCCTGTCTTAACAAGCATTGTGCCGTCAGTGCACGGGCCGGCAGAATACTACGTGAAGTTGTATCTGCCTGCCAAATATGAAAGAACACCTCCACAGCCCTTGGTCGAACTGAATTTGCAGTTGGATAATTGGAGAAGCCATTGCATAGCAGTCAGAAAGTTTCCAGGGTTTGCCAAAGATGACCGTTTTTCCAAAGAATTTGAAACTCTTGTGAACAGCCTAAATAAGCACTTAATTGGAAAGCCAGCGATTCTGGAAGCTGAGAGTCCTTATGCCATTGCTCAGTACAATGCTTCGTATCACCTTTCTGGGCGCCTAAACGAAGTGTGGATGGATCTTTCAGGAATCACTGCTGATTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SOUL

Protein Analysis

166

Amino Acids

18.84

Weight (kDa)

6.19

Isoelectric Point (pI)

42.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SOUL PF04832 26 - 156 9.5e-30 SOUL heme-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g25810
malus_domestica MD13G1096900.v1.1
prunus_persica Prupe.1G248800_v2.0.a1
pyrus_communis pycom13g08460
rosa_chinensis RchiOBHm_Chr4g0433261
rosa_laevigata RLG00000006770
rosa_multiflora Rmu_sc0022950.1_g000001
rosa_roxburghii Rroxscaffold_5G00374820
rosa_rugosa Rorug04G0267500
rosa_samantha Rh4AG322000 Rh4BG329400 Rh4CG344700 Rh4DG326100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 447
AclWI GGATC 1 cut(s) 477
AcsI RAATTY 2 cut(s) 247, 332
AcuI CTGAAG 1 cut(s) 99
AcyI GRCGYC 1 cut(s) 448
AfaI GTAC 1 cut(s) 422
AgsI TTSAA 2 cut(s) 50, 338
AjnI CCWGG 1 cut(s) 298
AjuI GAANNNNNNNTTGG 2 cut(s) 239, 271
AluBI AGCT 1 cut(s) 395
AluI AGCT 1 cut(s) 395
Alw21I GWGCWC 1 cut(s) 168
Alw44I GTGCAC 1 cut(s) 164
AlwI GGATC 1 cut(s) 477
AoxI GGCC 1 cut(s) 170
ApaLI GTGCAC 1 cut(s) 164
ApoI RAATTY 2 cut(s) 247, 332
AspLEI GCGC 1 cut(s) 450
AspS9I GGNCC 1 cut(s) 170
AsuHPI GGTGA 1 cut(s) 428
BaeGI GKGCMC 1 cut(s) 168
BanI GGYRCC 1 cut(s) 447
Bbv12I GWGCWC 1 cut(s) 168
BccI CCATC 1 cut(s) 460
BceAI ACGGC 2 cut(s) 142, 147
BciT130I CCWGG 1 cut(s) 300
BfoI RGCGCY 1 cut(s) 451
Bme1390I CCNGG 1 cut(s) 300
BmgT120I GGNCC 1 cut(s) 170
BmiI GGNNCC 2 cut(s) 135, 449
BmrFI CCNGG 1 cut(s) 300
BmsI GCATC 1 cut(s) 135
BsaAI YACGTR 1 cut(s) 187
BsaHI GRCGYC 1 cut(s) 448
BsaJI CCNNGG 3 cut(s) 94, 234, 299
Bse118I RCCGGY 1 cut(s) 172
Bse3DI GCAATG 2 cut(s) 274, 411
BseBI CCWGG 1 cut(s) 300
BseDI CCNNGG 3 cut(s) 94, 234, 299
BseGI GGATG 2 cut(s) 90, 471
BseMI GCAATG 2 cut(s) 274, 411
BseMII CTCAG 2 cut(s) 387, 431
BseSI GKGCMC 1 cut(s) 168
BshFI GGCC 1 cut(s) 172
BshNI GGYRCC 1 cut(s) 447
BsiHKAI GWGCWC 1 cut(s) 168
BsiSI CCGG 1 cut(s) 173
BsnI GGCC 1 cut(s) 172
Bsp1286I GDGCHC 1 cut(s) 168
Bsp143I GATC 1 cut(s) 469
Bsp19I CCATGG 1 cut(s) 94
BspANI GGCC 1 cut(s) 172
BspCNI CTCAG 2 cut(s) 388, 430
BspLI GGNNCC 2 cut(s) 135, 449
BspPI GGATC 1 cut(s) 477
BspT107I GGYRCC 1 cut(s) 447
BsrDI GCAATG 2 cut(s) 274, 411
BsrFI RCCGGY 1 cut(s) 172
BssAI RCCGGY 1 cut(s) 172
BssECI CCNNGG 3 cut(s) 94, 234, 299
BssMI GATC 1 cut(s) 469
BssNI GRCGYC 1 cut(s) 448
BssT1I CCWWGG 2 cut(s) 94, 234
Bst2UI CCWGG 1 cut(s) 300
Bst4CI ACNGT 1 cut(s) 320
Bst6I CTCTTC 1 cut(s) 118
BstACI GRCGYC 1 cut(s) 448
BstBAI YACGTR 1 cut(s) 187
BstC8I GCNNGC 3 cut(s) 174, 204, 381
BstDEI CTNAG 2 cut(s) 396, 417
BstDSI CCRYGG 1 cut(s) 94
BstF5I GGATG 2 cut(s) 90, 471
BstH2I RGCGCY 1 cut(s) 451
BstHHI GCGC 1 cut(s) 450
BstKTI GATC 1 cut(s) 472
BstMBI GATC 1 cut(s) 469
BstMWI GCNNNNNNNGC 1 cut(s) 163
BstNI CCWGG 1 cut(s) 300
BstSCI CCNGG 1 cut(s) 298
BstSLI GKGCMC 1 cut(s) 168
BstX2I RGATCY 1 cut(s) 469
BstYI RGATCY 1 cut(s) 469
BsuRI GGCC 1 cut(s) 172
BtgI CCRYGG 1 cut(s) 94
BtsCI GGATG 2 cut(s) 90, 471
BtsI GCAGTG 1 cut(s) 483
BtsIMutI CAGTG 2 cut(s) 168, 483
Cac8I GCNNGC 3 cut(s) 174, 204, 381
CfoI GCGC 1 cut(s) 450
Cfr10I RCCGGY 1 cut(s) 172
Cfr13I GGNCC 1 cut(s) 170
Csp6I GTAC 1 cut(s) 421
CspCI CAANNNNNGTGG 2 cut(s) 216, 251
CviAII CATG 1 cut(s) 95
CviJI RGCY 9 cut(s) 5, 79, 134, 172, 232, 273, 354, 379, 395
CviKI_1 RGCY 9 cut(s) 5, 79, 134, 172, 232, 273, 354, 379, 395
CviQI GTAC 1 cut(s) 421
DdeI CTNAG 2 cut(s) 396, 417
DinI GGCGCC 1 cut(s) 449
DpnI GATC 1 cut(s) 471
DpnII GATC 1 cut(s) 469
Eam1104I CTCTTC 1 cut(s) 118
EarI CTCTTC 1 cut(s) 118
Eco130I CCWWGG 2 cut(s) 94, 234
Eco57I CTGAAG 1 cut(s) 99
EcoRII CCWGG 1 cut(s) 298
EcoT14I CCWWGG 2 cut(s) 94, 234
EgeI GGCGCC 1 cut(s) 449
EheI GGCGCC 1 cut(s) 449
ErhI CCWWGG 2 cut(s) 94, 234
FaeI CATG 1 cut(s) 98
FaiI YATR 4 cut(s) 96, 213, 281, 408
FatI CATG 1 cut(s) 94
FokI GGATG 2 cut(s) 77, 478
GlaI GCGC 1 cut(s) 449
HaeII RGCGCY 1 cut(s) 451
HaeIII GGCC 1 cut(s) 172
HapII CCGG 1 cut(s) 173
HhaI GCGC 1 cut(s) 450
Hin1I GRCGYC 1 cut(s) 448
Hin1II CATG 1 cut(s) 98
Hin6I GCGC 1 cut(s) 448
HinP1I GCGC 1 cut(s) 448
HinfI GANTC 4 cut(s) 34, 385, 400, 480
HpaII CCGG 1 cut(s) 173
HphI GGTGA 1 cut(s) 428
Hpy166II GTNNAC 2 cut(s) 166, 349
Hpy188I TCNGA 2 cut(s) 118, 290
Hpy188III TCNNGA 2 cut(s) 389, 477
Hpy8I GTNNAC 2 cut(s) 166, 349
HpyCH4III ACNGT 1 cut(s) 320
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 3 cut(s) 166, 253, 279
HpyF10VI GCNNNNNNNGC 1 cut(s) 163
HpyF3I CTNAG 2 cut(s) 396, 417
HpySE526I ACGT 1 cut(s) 186
Hsp92I GRCGYC 1 cut(s) 448
Hsp92II CATG 1 cut(s) 98
HspAI GCGC 1 cut(s) 448
KasI GGCGCC 1 cut(s) 447
KroI GCCGGC 1 cut(s) 172
KroNI GCCGGC 1 cut(s) 174
Kzo9I GATC 1 cut(s) 469
LmnI GCTCC 1 cut(s) 139
LweI GCATC 1 cut(s) 135
MaeII ACGT 1 cut(s) 186
MaeIII GTNAC 1 cut(s) 11
MalI GATC 1 cut(s) 471
MboI GATC 1 cut(s) 469
MboII GAAGA 1 cut(s) 105
MflI RGATCY 1 cut(s) 469
MhlI GDGCHC 1 cut(s) 168
MluCI AATT 6 cut(s) 25, 120, 247, 262, 332, 369
Mly113I GGCGCC 1 cut(s) 448
MlyI GAGTC 1 cut(s) 409
MmeI TCCRAC 1 cut(s) 237
MnlI CCTC 2 cut(s) 116, 234
MroNI GCCGGC 1 cut(s) 172
MseI TTAA 2 cut(s) 143, 368
MspI CCGG 1 cut(s) 173
MspR9I CCNGG 1 cut(s) 300
MvaI CCWGG 1 cut(s) 300
MwoI GCNNNNNNNGC 1 cut(s) 163
NaeI GCCGGC 1 cut(s) 174
NarI GGCGCC 1 cut(s) 448
NcoI CCATGG 1 cut(s) 94
NdeII GATC 1 cut(s) 469
NgoMIV GCCGGC 1 cut(s) 172
NlaIII CATG 1 cut(s) 98
NlaIV GGNNCC 2 cut(s) 135, 449
PdiI GCCGGC 1 cut(s) 174
PfeI GAWTC 3 cut(s) 34, 385, 480
PleI GAGTC 1 cut(s) 408
PluTI GGCGCC 1 cut(s) 451
PpsI GAGTC 1 cut(s) 408
Ppu21I YACGTR 1 cut(s) 187
Psp6I CCWGG 1 cut(s) 298
PspGI CCWGG 1 cut(s) 298
PspN4I GGNNCC 2 cut(s) 135, 449
PspPI GGNCC 1 cut(s) 170
PsuI RGATCY 1 cut(s) 469
RsaI GTAC 1 cut(s) 422
RsaNI GTAC 1 cut(s) 421
SaqAI TTAA 2 cut(s) 143, 368
Sau3AI GATC 1 cut(s) 469
Sau96I GGNCC 1 cut(s) 170
SchI GAGTC 1 cut(s) 409
ScrFI CCNGG 1 cut(s) 300
SduI GDGCHC 1 cut(s) 168
SetI ASST 6 cut(s) 18, 108, 189, 226, 397, 441
SfaNI GCATC 1 cut(s) 135
SfoI GGCGCC 1 cut(s) 449
Sse9I AATT 6 cut(s) 25, 120, 247, 262, 332, 369
SspDI GGCGCC 1 cut(s) 447
StyD4I CCNGG 1 cut(s) 298
StyI CCWWGG 2 cut(s) 94, 234
TaaI ACNGT 1 cut(s) 320
TaiI ACGT 1 cut(s) 189
TaqI TCGA 1 cut(s) 240
TasI AATT 6 cut(s) 25, 120, 247, 262, 332, 369
TatI WGTACW 1 cut(s) 420
TfiI GAWTC 3 cut(s) 34, 385, 480
Tru1I TTAA 2 cut(s) 143, 368
Tru9I TTAA 2 cut(s) 143, 368
TscAI CASTG 2 cut(s) 168, 490
TspDTI ATGAA 1 cut(s) 228
TspRI CASTG 2 cut(s) 168, 490
VneI GTGCAC 1 cut(s) 164
XapI RAATTY 2 cut(s) 247, 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.