RLG00000006770

SOUL heme-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0017289
Physical Location & Seq
Forward (+)
10314901 .. 10315604
704 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006770

Sequence Viewer

Length: 627 bp
ATGGAGAGGCTATTCATGATCATGGTAATATGCTACCTCTGTGGTAGTATAGTTGAACTCTCTGGTCAAGCTGTCGAGTCGCCTCAGTACAGAGTGGTGCATTCAGAATCAGACTTTGAGGTCAGACTCTACAGAGAATCCTCATGGATGTCAGCTCAAGTCCGAGAAACAACTTCATTCGAAAAAGCCACTAAAGATGGCTTTCACAGGTTGTATCAGTACATTCATGGTGATAACCTTAACTCGTCCCAGATTACCATGACAGCTCCAGTGTTAACAAGCATTGTCCCATCTGCGCATGGACCGGAATTCTATGTAAGGTTCTATCTGCCTGCCAAATATGAAAGAACACCCCCACAGCCTTTCACTGAACTGAATTTGCAGTTTGATAAGCGGAGAAGTCACTGCATGGCAGCCAGAAAGTTTCCAGGGTTTGCCAAGGATGATGACATTAATGAGGAATTTGAAACTCTTGTGAGCAGCCTAAATAAGCACTTGAATGGAAAACCAGGAATCCTGAAGGAAAAGAGTTCTTATGCAATAGCCCAGTACAATGCTTCATATCATGTTTCTGGGCGCTTAAATGAAGTGTGGATGGATCTCTCAGGATTTACTGTCGACTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SOUL

Protein Analysis

209

Amino Acids

23.89

Weight (kDa)

6.17

Isoelectric Point (pI)

47.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SOUL PF04832 25 - 199 1.5e-49 SOUL heme-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g25810
malus_domestica MD13G1096900.v1.1
prunus_persica Prupe.1G248800_v2.0.a1
pyrus_communis pycom13g08460
rosa_chinensis RchiOBHm_Chr4g0433261
rosa_laevigata RLG00000006770
rosa_multiflora Rmu_sc0022950.1_g000001
rosa_roxburghii Rroxscaffold_5G00374820
rosa_rugosa Rorug04G0267500
rosa_samantha Rh4AG322000 Rh4BG329400 Rh4CG344700 Rh4DG326100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 119
Acc16I TGCGCA 1 cut(s) 297
AccI GTMKAC 1 cut(s) 618
AciI CCGC 1 cut(s) 394
AclWI GGATC 1 cut(s) 606
AcsI RAATTY 3 cut(s) 308, 376, 461
AcuI CTGAAG 1 cut(s) 539
AfaI GTAC 3 cut(s) 89, 221, 551
AgsI TTSAA 3 cut(s) 56, 467, 499
AjnI CCWGG 2 cut(s) 427, 508
AluBI AGCT 3 cut(s) 71, 155, 266
AluI AGCT 3 cut(s) 71, 155, 266
AlwI GGATC 1 cut(s) 606
ApeKI GCWGC 2 cut(s) 413, 480
ApoI RAATTY 3 cut(s) 308, 376, 461
AseI ATTAAT 1 cut(s) 453
AspLEI GCGC 2 cut(s) 298, 579
AspS9I GGNCC 1 cut(s) 302
AsuHPI GGTGA 1 cut(s) 242
AsuII TTCGAA 1 cut(s) 180
AvaII GGWCC 1 cut(s) 302
BbvI GCAGC 2 cut(s) 425, 492
BccI CCATC 3 cut(s) 191, 298, 589
BciT130I CCWGG 2 cut(s) 429, 510
BclI TGATCA 1 cut(s) 18
BfmI CTRYAG 1 cut(s) 130
BfoI RGCGCY 1 cut(s) 580
BisI GCNGC 2 cut(s) 414, 481
BlsI GCNGC 2 cut(s) 415, 482
Bme1390I CCNGG 2 cut(s) 429, 510
Bme18I GGWCC 1 cut(s) 302
BmgT120I GGNCC 1 cut(s) 302
BmrFI CCNGG 2 cut(s) 429, 510
BmrI ACTGGG 1 cut(s) 541
BmuI ACTGGG 1 cut(s) 541
BpmI CTGGAG 1 cut(s) 252
Bpu14I TTCGAA 1 cut(s) 180
BpuEI CTTGAG 1 cut(s) 141
BsaJI CCNNGG 2 cut(s) 428, 438
BsaWI WCCGGW 1 cut(s) 304
Bse1I ACTGG 2 cut(s) 269, 547
BseBI CCWGG 2 cut(s) 429, 510
BseDI CCNNGG 2 cut(s) 428, 438
BseGI GGATG 3 cut(s) 153, 448, 600
BseMII CTCAG 2 cut(s) 98, 618
BseNI ACTGG 2 cut(s) 269, 547
BseXI GCAGC 2 cut(s) 425, 492
BsiSI CCGG 1 cut(s) 305
BslFI GGGAC 2 cut(s) 232, 272
BsmFI GGGAC 2 cut(s) 232, 272
BsmI GAATGC 1 cut(s) 100
Bsp119I TTCGAA 1 cut(s) 180
Bsp143I GATC 2 cut(s) 18, 598
BspACI CCGC 1 cut(s) 394
BspCNI CTCAG 2 cut(s) 97, 617
BspHI TCATGA 1 cut(s) 15
BspPI GGATC 1 cut(s) 606
BspT104I TTCGAA 1 cut(s) 180
BsrI ACTGG 2 cut(s) 269, 547
BssECI CCNNGG 2 cut(s) 428, 438
BssMI GATC 2 cut(s) 18, 598
BssT1I CCWWGG 1 cut(s) 438
Bst2UI CCWGG 2 cut(s) 429, 510
Bst4CI ACNGT 1 cut(s) 616
BstBI TTCGAA 1 cut(s) 180
BstC8I GCNNGC 1 cut(s) 333
BstDEI CTNAG 2 cut(s) 84, 604
BstF5I GGATG 3 cut(s) 153, 448, 600
BstH2I RGCGCY 1 cut(s) 580
BstHHI GCGC 2 cut(s) 298, 579
BstKTI GATC 2 cut(s) 21, 601
BstMBI GATC 2 cut(s) 18, 598
BstNI CCWGG 2 cut(s) 429, 510
BstSCI CCNGG 2 cut(s) 427, 508
BstSFI CTRYAG 1 cut(s) 130
BstV1I GCAGC 2 cut(s) 425, 492
BstX2I RGATCY 1 cut(s) 598
BstYI RGATCY 1 cut(s) 598
BtsCI GGATG 3 cut(s) 153, 448, 600
BtsI GCAGTG 1 cut(s) 403
BtsIMutI CAGTG 3 cut(s) 276, 366, 403
Cac8I GCNNGC 1 cut(s) 333
CciI TCATGA 1 cut(s) 15
CfoI GCGC 2 cut(s) 298, 579
Cfr13I GGNCC 1 cut(s) 302
Csp6I GTAC 3 cut(s) 88, 220, 550
CviAII CATG 8 cut(s) 16, 22, 144, 227, 259, 299, 409, 566
CviQI GTAC 3 cut(s) 88, 220, 550
DdeI CTNAG 2 cut(s) 84, 604
DpnI GATC 2 cut(s) 20, 600
DpnII GATC 2 cut(s) 18, 598
DrdI GACNNNNNNGTC 1 cut(s) 119
DseDI GACNNNNNNGTC 1 cut(s) 119
Eco130I CCWWGG 1 cut(s) 438
Eco47I GGWCC 1 cut(s) 302
Eco57I CTGAAG 1 cut(s) 539
EcoRI GAATTC 1 cut(s) 308
EcoRII CCWGG 2 cut(s) 427, 508
EcoT14I CCWWGG 1 cut(s) 438
ErhI CCWWGG 1 cut(s) 438
FaeI CATG 8 cut(s) 19, 25, 147, 230, 262, 302, 412, 569
FaqI GGGAC 2 cut(s) 232, 272
FatI CATG 8 cut(s) 15, 21, 143, 226, 258, 298, 408, 565
FbaI TGATCA 1 cut(s) 18
FblI GTMKAC 1 cut(s) 618
Fnu4HI GCNGC 2 cut(s) 414, 481
FokI GGATG 3 cut(s) 160, 455, 607
Fsp4HI GCNGC 2 cut(s) 414, 481
FspI TGCGCA 1 cut(s) 297
GlaI GCGC 2 cut(s) 297, 578
GluI GCNGC 2 cut(s) 414, 481
GsuI CTGGAG 1 cut(s) 252
HaeII RGCGCY 1 cut(s) 580
HapII CCGG 1 cut(s) 305
HhaI GCGC 2 cut(s) 298, 579
Hin1II CATG 8 cut(s) 19, 25, 147, 230, 262, 302, 412, 569
Hin6I GCGC 2 cut(s) 296, 577
HinP1I GCGC 2 cut(s) 296, 577
HincII GTYRAC 2 cut(s) 276, 619
HindII GTYRAC 2 cut(s) 276, 619
HinfI GANTC 5 cut(s) 77, 107, 126, 137, 513
HpaI GTTAAC 1 cut(s) 276
HpaII CCGG 1 cut(s) 305
HphI GGTGA 1 cut(s) 242
Hpy166II GTNNAC 2 cut(s) 276, 619
Hpy188I TCNGA 4 cut(s) 106, 112, 125, 164
Hpy188III TCNNGA 3 cut(s) 16, 517, 606
Hpy8I GTNNAC 2 cut(s) 276, 619
HpyAV CCTTC 1 cut(s) 514
HpyCH4III ACNGT 1 cut(s) 616
HpyCH4V TGCA 4 cut(s) 100, 382, 408, 539
HpyF3I CTNAG 2 cut(s) 84, 604
Hsp92II CATG 8 cut(s) 19, 25, 147, 230, 262, 302, 412, 569
HspAI GCGC 2 cut(s) 296, 577
Ksp22I TGATCA 1 cut(s) 18
KspAI GTTAAC 1 cut(s) 276
Kzo9I GATC 2 cut(s) 18, 598
LmnI GCTCC 1 cut(s) 271
Lsp1109I GCAGC 2 cut(s) 425, 492
MaeIII GTNAC 1 cut(s) 401
MalI GATC 2 cut(s) 20, 600
MboI GATC 2 cut(s) 18, 598
MflI RGATCY 1 cut(s) 598
MluCI AATT 3 cut(s) 308, 376, 461
MlyI GAGTC 2 cut(s) 86, 120
MnlI CCTC 5 cut(s) 47, 93, 112, 151, 451
MseI TTAA 4 cut(s) 240, 275, 453, 581
MslI CAYNNNNRTG 2 cut(s) 20, 498
MspI CCGG 1 cut(s) 305
MspR9I CCNGG 2 cut(s) 429, 510
Mva1269I GAATGC 1 cut(s) 100
MvaI CCWGG 2 cut(s) 429, 510
NdeII GATC 2 cut(s) 18, 598
NlaIII CATG 8 cut(s) 19, 25, 147, 230, 262, 302, 412, 569
NmuCI GTSAC 1 cut(s) 401
NsbI TGCGCA 1 cut(s) 297
NspV TTCGAA 1 cut(s) 180
PagI TCATGA 1 cut(s) 15
PctI GAATGC 1 cut(s) 100
PfeI GAWTC 3 cut(s) 107, 137, 513
PkrI GCNGC 2 cut(s) 415, 482
PleI GAGTC 2 cut(s) 85, 120
PpsI GAGTC 2 cut(s) 85, 120
PshBI ATTAAT 1 cut(s) 453
Psp6I CCWGG 2 cut(s) 427, 508
PspGI CCWGG 2 cut(s) 427, 508
PspPI GGNCC 1 cut(s) 302
PsuI RGATCY 1 cut(s) 598
RsaI GTAC 3 cut(s) 89, 221, 551
RsaNI GTAC 3 cut(s) 88, 220, 550
RseI CAYNNNNRTG 2 cut(s) 20, 498
SalI GTCGAC 1 cut(s) 617
SaqAI TTAA 4 cut(s) 240, 275, 453, 581
SatI GCNGC 2 cut(s) 414, 481
Sau3AI GATC 2 cut(s) 18, 598
Sau96I GGNCC 1 cut(s) 302
SchI GAGTC 2 cut(s) 86, 120
ScrFI CCNGG 2 cut(s) 429, 510
SetI ASST 8 cut(s) 39, 73, 123, 157, 212, 240, 268, 323
SfcI CTRYAG 1 cut(s) 130
SfuI TTCGAA 1 cut(s) 180
SinI GGWCC 1 cut(s) 302
SmiMI CAYNNNNRTG 2 cut(s) 20, 498
SmlI CTYRAG 1 cut(s) 156
SmoI CTYRAG 1 cut(s) 156
Sse9I AATT 3 cut(s) 308, 376, 461
SsiI CCGC 1 cut(s) 394
StyD4I CCNGG 2 cut(s) 427, 508
StyI CCWWGG 1 cut(s) 438
TaaI ACNGT 1 cut(s) 616
TaqI TCGA 3 cut(s) 75, 180, 618
TasI AATT 3 cut(s) 308, 376, 461
TatI WGTACW 3 cut(s) 87, 219, 549
TfiI GAWTC 3 cut(s) 107, 137, 513
Tru1I TTAA 4 cut(s) 240, 275, 453, 581
Tru9I TTAA 4 cut(s) 240, 275, 453, 581
TscAI CASTG 3 cut(s) 276, 373, 410
TseFI GTSAC 1 cut(s) 401
TseI GCWGC 2 cut(s) 413, 480
Tsp45I GTSAC 1 cut(s) 401
TspDTI ATGAA 6 cut(s) 4, 165, 215, 357, 549, 600
TspRI CASTG 3 cut(s) 276, 373, 410
VpaK11BI GGWCC 1 cut(s) 302
VspI ATTAAT 1 cut(s) 453
XapI RAATTY 3 cut(s) 308, 376, 461
XmiI GTMKAC 1 cut(s) 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.