Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022950.1

Orthogroup ID

OG0017289

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 621

Gene Structure 620 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022950.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

atgggacagagcactaatcatcaaataatggagaggctattcatgatcatggtaatatgctacctctgtggtagtatagttgaactctctggtcaagctgtcgagtcgcctcaatacagagtggtgcattcagaatcagactttgaggtcagactatacagagaatcctcatggatgtcagctcaagtccgagaaacaacttcattcgaaaaagccactaaagatggctttcacaggttgtatcagtacattcatggtgataaccttaactcgtcccagattaccatgacagctccggtgttaacaagcattgtcccatccgtgcatggaccggaatactatgtaaggttgtatctgtctgccaaatatgaaagaacaccaccacagcctttcactgaactgaatttgcagtttgataagctgagaggtcgctgcatagcagccagaaagtttccagggtttgccaaggacgatgacattaatgaggaatttgaaactcttgtgaatagcctaaataagcacttgactggaaaaccaggaatc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SOUL

Protein Analysis

181

Amino Acids

20.76

Weight (kDa)

6.3

Isoelectric Point (pI)

36.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017289)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g25810
malus_domestica	MD13G1096900.v1.1
prunus_persica	Prupe.1G248800_v2.0.a1
pyrus_communis	pycom13g08460
rosa_chinensis	RchiOBHm_Chr4g0433261
rosa_laevigata	RLG00000006770
rosa_multiflora	Rmu_sc0022950.1_g000001
rosa_roxburghii	Rroxscaffold_5G00374820
rosa_rugosa	Rorug04G0267500
rosa_samantha	Rh4AG322000 Rh4BG329400 Rh4CG344700 Rh4DG326100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	146
AcsI	RAATTY	2 cut(s)	403, 488
AfaI	GTAC	1 cut(s)	248
AgsI	TTSAA	2 cut(s)	83, 494
AjnI	CCWGG	2 cut(s)	454, 535
AluBI	AGCT	4 cut(s)	98, 182, 293, 421
AluI	AGCT	4 cut(s)	98, 182, 293, 421
Alw21I	GWGCWC	1 cut(s)	14
ApeKI	GCWGC	2 cut(s)	432, 440
ApoI	RAATTY	2 cut(s)	403, 488
AseI	ATTAAT	1 cut(s)	480
AspS9I	GGNCC	1 cut(s)	329
AsuHPI	GGTGA	1 cut(s)	269
AsuII	TTCGAA	1 cut(s)	207
AvaII	GGWCC	1 cut(s)	329
Bbv12I	GWGCWC	1 cut(s)	14
BbvI	GCAGC	2 cut(s)	419, 452
BccI	CCATC	2 cut(s)	218, 325
BciT130I	CCWGG	2 cut(s)	456, 537
BclI	TGATCA	1 cut(s)	45
BisI	GCNGC	2 cut(s)	433, 441
BlsI	GCNGC	2 cut(s)	434, 442
Bme1390I	CCNGG	2 cut(s)	456, 537
Bme18I	GGWCC	1 cut(s)	329
BmgT120I	GGNCC	1 cut(s)	329
BmrFI	CCNGG	2 cut(s)	456, 537
Bpu14I	TTCGAA	1 cut(s)	207
BpuEI	CTTGAG	1 cut(s)	168
BsaJI	CCNNGG	2 cut(s)	455, 465
BsaWI	WCCGGW	2 cut(s)	295, 331
Bse1I	ACTGG	1 cut(s)	532
BseBI	CCWGG	2 cut(s)	456, 537
BseDI	CCNNGG	2 cut(s)	455, 465
BseGI	GGATG	2 cut(s)	180, 317
BseMII	CTCAG	1 cut(s)	413
BseNI	ACTGG	1 cut(s)	532
BseXI	GCAGC	2 cut(s)	419, 452
BsiHKAI	GWGCWC	1 cut(s)	14
BsiSI	CCGG	2 cut(s)	296, 332
BslFI	GGGAC	3 cut(s)	18, 259, 299
BsmFI	GGGAC	3 cut(s)	18, 259, 299
BsmI	GAATGC	1 cut(s)	127
Bsp119I	TTCGAA	1 cut(s)	207
Bsp1286I	GDGCHC	1 cut(s)	14
Bsp143I	GATC	1 cut(s)	45
BspCNI	CTCAG	1 cut(s)	414
BspHI	TCATGA	1 cut(s)	42
BspT104I	TTCGAA	1 cut(s)	207
BsrI	ACTGG	1 cut(s)	532
BssECI	CCNNGG	2 cut(s)	455, 465
BssMI	GATC	1 cut(s)	45
BssT1I	CCWWGG	1 cut(s)	465
Bst2UI	CCWGG	2 cut(s)	456, 537
BstBI	TTCGAA	1 cut(s)	207
BstDEI	CTNAG	1 cut(s)	422
BstF5I	GGATG	2 cut(s)	180, 317
BstKTI	GATC	1 cut(s)	48
BstMBI	GATC	1 cut(s)	45
BstNI	CCWGG	2 cut(s)	456, 537
BstSCI	CCNGG	2 cut(s)	454, 535
BstV1I	GCAGC	2 cut(s)	419, 452
BtsCI	GGATG	2 cut(s)	180, 317
BtsIMutI	CAGTG	1 cut(s)	393
CciI	TCATGA	1 cut(s)	42
Cfr13I	GGNCC	1 cut(s)	329
Csp6I	GTAC	1 cut(s)	247
CviAII	CATG	6 cut(s)	43, 49, 171, 254, 286, 326
CviQI	GTAC	1 cut(s)	247
DdeI	CTNAG	1 cut(s)	422
DpnI	GATC	1 cut(s)	47
DpnII	GATC	1 cut(s)	45
DrdI	GACNNNNNNGTC	1 cut(s)	146
DseDI	GACNNNNNNGTC	1 cut(s)	146
Eco130I	CCWWGG	1 cut(s)	465
Eco47I	GGWCC	1 cut(s)	329
EcoRII	CCWGG	2 cut(s)	454, 535
EcoT14I	CCWWGG	1 cut(s)	465
ErhI	CCWWGG	1 cut(s)	465
FaeI	CATG	6 cut(s)	46, 52, 174, 257, 289, 329
FaqI	GGGAC	3 cut(s)	18, 259, 299
FatI	CATG	6 cut(s)	42, 48, 170, 253, 285, 325
FbaI	TGATCA	1 cut(s)	45
Fnu4HI	GCNGC	2 cut(s)	433, 441
FokI	GGATG	2 cut(s)	187, 304
Fsp4HI	GCNGC	2 cut(s)	433, 441
GluI	GCNGC	2 cut(s)	433, 441
HapII	CCGG	2 cut(s)	296, 332
Hin1II	CATG	6 cut(s)	46, 52, 174, 257, 289, 329
HincII	GTYRAC	1 cut(s)	303
HindII	GTYRAC	1 cut(s)	303
HinfI	GANTC	4 cut(s)	104, 134, 164, 540
HpaI	GTTAAC	1 cut(s)	303
HpaII	CCGG	2 cut(s)	296, 332
HphI	GGTGA	1 cut(s)	269
Hpy166II	GTNNAC	1 cut(s)	303
Hpy188I	TCNGA	4 cut(s)	133, 139, 152, 191
Hpy188III	TCNNGA	1 cut(s)	43
Hpy8I	GTNNAC	1 cut(s)	303
HpyCH4V	TGCA	4 cut(s)	127, 325, 409, 435
HpyF3I	CTNAG	1 cut(s)	422
Hsp92II	CATG	6 cut(s)	46, 52, 174, 257, 289, 329
Ksp22I	TGATCA	1 cut(s)	45
KspAI	GTTAAC	1 cut(s)	303
Kzo9I	GATC	1 cut(s)	45
LmnI	GCTCC	1 cut(s)	298
Lsp1109I	GCAGC	2 cut(s)	419, 452
MalI	GATC	1 cut(s)	47
MboI	GATC	1 cut(s)	45
MhlI	GDGCHC	1 cut(s)	14
MluCI	AATT	2 cut(s)	403, 488
MlyI	GAGTC	1 cut(s)	113
MnlI	CCTC	7 cut(s)	27, 74, 120, 139, 178, 419, 478
MseI	TTAA	3 cut(s)	267, 302, 480
MslI	CAYNNNNRTG	1 cut(s)	47
MspI	CCGG	2 cut(s)	296, 332
MspR9I	CCNGG	2 cut(s)	456, 537
Mva1269I	GAATGC	1 cut(s)	127
MvaI	CCWGG	2 cut(s)	456, 537
NdeII	GATC	1 cut(s)	45
NlaIII	CATG	6 cut(s)	46, 52, 174, 257, 289, 329
NspV	TTCGAA	1 cut(s)	207
PagI	TCATGA	1 cut(s)	42
PctI	GAATGC	1 cut(s)	127
PfeI	GAWTC	3 cut(s)	134, 164, 540
PkrI	GCNGC	2 cut(s)	434, 442
PleI	GAGTC	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	112
PshBI	ATTAAT	1 cut(s)	480
Psp6I	CCWGG	2 cut(s)	454, 535
PspGI	CCWGG	2 cut(s)	454, 535
PspPI	GGNCC	1 cut(s)	329
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
RseI	CAYNNNNRTG	1 cut(s)	47
SaqAI	TTAA	3 cut(s)	267, 302, 480
SatI	GCNGC	2 cut(s)	433, 441
Sau3AI	GATC	1 cut(s)	45
Sau96I	GGNCC	1 cut(s)	329
SchI	GAGTC	1 cut(s)	113
ScrFI	CCNGG	2 cut(s)	456, 537
SduI	GDGCHC	1 cut(s)	14
SfuI	TTCGAA	1 cut(s)	207
SinI	GGWCC	1 cut(s)	329
SmiMI	CAYNNNNRTG	1 cut(s)	47
SmlI	CTYRAG	1 cut(s)	183
SmoI	CTYRAG	1 cut(s)	183
Sse9I	AATT	2 cut(s)	403, 488
StyD4I	CCNGG	2 cut(s)	454, 535
StyI	CCWWGG	1 cut(s)	465
TaqI	TCGA	2 cut(s)	102, 207
TasI	AATT	2 cut(s)	403, 488
TatI	WGTACW	1 cut(s)	246
TfiI	GAWTC	3 cut(s)	134, 164, 540
Tru1I	TTAA	3 cut(s)	267, 302, 480
Tru9I	TTAA	3 cut(s)	267, 302, 480
TscAI	CASTG	1 cut(s)	400
TseI	GCWGC	2 cut(s)	432, 440
TspDTI	ATGAA	4 cut(s)	31, 192, 242, 384
TspGWI	ACGGA	1 cut(s)	310
TspRI	CASTG	1 cut(s)	400
VpaK11BI	GGWCC	1 cut(s)	329
VspI	ATTAAT	1 cut(s)	480
XapI	RAATTY	2 cut(s)	403, 488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.