Rh4AG322000

SOUL heme-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0017289
Physical Location & Seq
Reverse (-)
63447234 .. 63447964
731 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG322000.1

Sequence Viewer

Length: 654 bp
ATGGGACAGAGCACTAATCATCAAATAATGGAGAGGCTATTCATGATCATGGTAATATGCTACCTCTGTGGTAGTATAGTTGAACTCTCTGGTCAAGCTGTCGAGTCGCCTCAATACAGAGTGGTGCATTCAGAATCAGACTTTGAGGTCAGACTCTACAGAGAATCCTCATGGATGTCAGCTCAAGTCCGAGAAACAACTTCATTCGAAAAAGCCACTAAAGATGGCTTTCACAGGTTGTATCAGTACATTCATGGTGATAACCTTAACTCGTCCCAGATTACCATGACAGCTCCGGTATTAACAAGCATTGTCCCATCCGTGCATGGACCGGAATACCATGTAAGGTTGTATCTGTCTGCCAAATATGAAAGAACACCACCACAGCCTTTCACTGAACTGAATTTGCAGTTTGATAAGCTGAGAAGTCGCTGCATAGCAGCCAGAAAGTTTCCAGGGTTTGCCAAGGACGATGACATTAATGAGGAATTTGAAACTCTTGTGAGTAGCCTAAATAAGCACCTGTATGGAAAACCAGGAATCCTGAAAGAAAAGAGTTCTTATACAATAGCCCAGTACAATGCTTCATATCATGTTTCTGGGCGCTTAAATGAAGTGTGGATGGATCTCTCAGGATTTACTGTCGACTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SOUL

Protein Analysis

217

Amino Acids

24.9

Weight (kDa)

6.24

Isoelectric Point (pI)

37.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SOUL PF04832 34 - 208 5.7e-47 SOUL heme-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g25810
malus_domestica MD13G1096900.v1.1
prunus_persica Prupe.1G248800_v2.0.a1
pyrus_communis pycom13g08460
rosa_chinensis RchiOBHm_Chr4g0433261
rosa_laevigata RLG00000006770
rosa_multiflora Rmu_sc0022950.1_g000001
rosa_roxburghii Rroxscaffold_5G00374820
rosa_rugosa Rorug04G0267500
rosa_samantha Rh4AG322000 Rh4BG329400 Rh4CG344700 Rh4DG326100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 146
AccI GTMKAC 1 cut(s) 645
AclWI GGATC 1 cut(s) 633
AcsI RAATTY 2 cut(s) 403, 488
AfaI GTAC 2 cut(s) 248, 578
AgsI TTSAA 2 cut(s) 83, 494
AjnI CCWGG 2 cut(s) 454, 535
AluBI AGCT 4 cut(s) 98, 182, 293, 421
AluI AGCT 4 cut(s) 98, 182, 293, 421
Alw21I GWGCWC 1 cut(s) 14
AlwI GGATC 1 cut(s) 633
ApeKI GCWGC 2 cut(s) 432, 440
ApoI RAATTY 2 cut(s) 403, 488
AseI ATTAAT 1 cut(s) 480
AspLEI GCGC 1 cut(s) 606
AspS9I GGNCC 1 cut(s) 329
AsuHPI GGTGA 1 cut(s) 269
AsuII TTCGAA 1 cut(s) 207
AvaII GGWCC 1 cut(s) 329
Bbv12I GWGCWC 1 cut(s) 14
BbvI GCAGC 2 cut(s) 419, 452
BccI CCATC 3 cut(s) 218, 325, 616
BciT130I CCWGG 2 cut(s) 456, 537
BclI TGATCA 1 cut(s) 45
BfmI CTRYAG 1 cut(s) 157
BfoI RGCGCY 1 cut(s) 607
BisI GCNGC 2 cut(s) 433, 441
BlsI GCNGC 2 cut(s) 434, 442
Bme1390I CCNGG 2 cut(s) 456, 537
Bme18I GGWCC 1 cut(s) 329
BmgT120I GGNCC 1 cut(s) 329
BmrFI CCNGG 2 cut(s) 456, 537
BmrI ACTGGG 1 cut(s) 568
BmuI ACTGGG 1 cut(s) 568
Bpu14I TTCGAA 1 cut(s) 207
BpuEI CTTGAG 1 cut(s) 168
BsaJI CCNNGG 2 cut(s) 455, 465
BsaWI WCCGGW 2 cut(s) 295, 331
Bse1I ACTGG 1 cut(s) 574
BseBI CCWGG 2 cut(s) 456, 537
BseDI CCNNGG 2 cut(s) 455, 465
BseGI GGATG 3 cut(s) 180, 317, 627
BseMII CTCAG 2 cut(s) 413, 645
BseNI ACTGG 1 cut(s) 574
BseXI GCAGC 2 cut(s) 419, 452
BsiHKAI GWGCWC 1 cut(s) 14
BsiSI CCGG 2 cut(s) 296, 332
BslFI GGGAC 3 cut(s) 18, 259, 299
BsmFI GGGAC 3 cut(s) 18, 259, 299
BsmI GAATGC 1 cut(s) 127
Bsp119I TTCGAA 1 cut(s) 207
Bsp1286I GDGCHC 1 cut(s) 14
Bsp143I GATC 2 cut(s) 45, 625
BspCNI CTCAG 2 cut(s) 414, 644
BspHI TCATGA 1 cut(s) 42
BspPI GGATC 1 cut(s) 633
BspT104I TTCGAA 1 cut(s) 207
BsrI ACTGG 1 cut(s) 574
BssECI CCNNGG 2 cut(s) 455, 465
BssMI GATC 2 cut(s) 45, 625
BssT1I CCWWGG 1 cut(s) 465
Bst2UI CCWGG 2 cut(s) 456, 537
Bst4CI ACNGT 1 cut(s) 643
BstBI TTCGAA 1 cut(s) 207
BstDEI CTNAG 2 cut(s) 422, 631
BstF5I GGATG 3 cut(s) 180, 317, 627
BstH2I RGCGCY 1 cut(s) 607
BstHHI GCGC 1 cut(s) 606
BstKTI GATC 2 cut(s) 48, 628
BstMBI GATC 2 cut(s) 45, 625
BstNI CCWGG 2 cut(s) 456, 537
BstSCI CCNGG 2 cut(s) 454, 535
BstSFI CTRYAG 1 cut(s) 157
BstV1I GCAGC 2 cut(s) 419, 452
BstX2I RGATCY 1 cut(s) 625
BstYI RGATCY 1 cut(s) 625
BtsCI GGATG 3 cut(s) 180, 317, 627
BtsIMutI CAGTG 1 cut(s) 393
CciI TCATGA 1 cut(s) 42
CfoI GCGC 1 cut(s) 606
Cfr13I GGNCC 1 cut(s) 329
Csp6I GTAC 2 cut(s) 247, 577
CviAII CATG 8 cut(s) 43, 49, 171, 254, 286, 326, 341, 593
CviQI GTAC 2 cut(s) 247, 577
DdeI CTNAG 2 cut(s) 422, 631
DpnI GATC 2 cut(s) 47, 627
DpnII GATC 2 cut(s) 45, 625
DrdI GACNNNNNNGTC 1 cut(s) 146
DseDI GACNNNNNNGTC 1 cut(s) 146
Eco130I CCWWGG 1 cut(s) 465
Eco47I GGWCC 1 cut(s) 329
EcoRII CCWGG 2 cut(s) 454, 535
EcoT14I CCWWGG 1 cut(s) 465
ErhI CCWWGG 1 cut(s) 465
FaeI CATG 8 cut(s) 46, 52, 174, 257, 289, 329, 344, 596
FaqI GGGAC 3 cut(s) 18, 259, 299
FatI CATG 8 cut(s) 42, 48, 170, 253, 285, 325, 340, 592
FbaI TGATCA 1 cut(s) 45
FblI GTMKAC 1 cut(s) 645
Fnu4HI GCNGC 2 cut(s) 433, 441
FokI GGATG 3 cut(s) 187, 304, 634
Fsp4HI GCNGC 2 cut(s) 433, 441
GlaI GCGC 1 cut(s) 605
GluI GCNGC 2 cut(s) 433, 441
HaeII RGCGCY 1 cut(s) 607
HapII CCGG 2 cut(s) 296, 332
HhaI GCGC 1 cut(s) 606
Hin1II CATG 8 cut(s) 46, 52, 174, 257, 289, 329, 344, 596
Hin6I GCGC 1 cut(s) 604
HinP1I GCGC 1 cut(s) 604
HincII GTYRAC 1 cut(s) 646
HindII GTYRAC 1 cut(s) 646
HinfI GANTC 5 cut(s) 104, 134, 153, 164, 540
HpaII CCGG 2 cut(s) 296, 332
HphI GGTGA 1 cut(s) 269
Hpy166II GTNNAC 1 cut(s) 646
Hpy188I TCNGA 4 cut(s) 133, 139, 152, 191
Hpy188III TCNNGA 3 cut(s) 43, 544, 633
Hpy8I GTNNAC 1 cut(s) 646
HpyCH4III ACNGT 1 cut(s) 643
HpyCH4V TGCA 4 cut(s) 127, 325, 409, 435
HpyF3I CTNAG 2 cut(s) 422, 631
Hsp92II CATG 8 cut(s) 46, 52, 174, 257, 289, 329, 344, 596
HspAI GCGC 1 cut(s) 604
Ksp22I TGATCA 1 cut(s) 45
Kzo9I GATC 2 cut(s) 45, 625
LmnI GCTCC 1 cut(s) 298
Lsp1109I GCAGC 2 cut(s) 419, 452
MalI GATC 2 cut(s) 47, 627
MboI GATC 2 cut(s) 45, 625
MflI RGATCY 1 cut(s) 625
MhlI GDGCHC 1 cut(s) 14
MluCI AATT 2 cut(s) 403, 488
MlyI GAGTC 2 cut(s) 113, 147
MnlI CCTC 6 cut(s) 27, 74, 120, 139, 178, 478
MseI TTAA 4 cut(s) 267, 302, 480, 608
MslI CAYNNNNRTG 2 cut(s) 47, 525
MspI CCGG 2 cut(s) 296, 332
MspR9I CCNGG 2 cut(s) 456, 537
Mva1269I GAATGC 1 cut(s) 127
MvaI CCWGG 2 cut(s) 456, 537
NdeII GATC 2 cut(s) 45, 625
NlaIII CATG 8 cut(s) 46, 52, 174, 257, 289, 329, 344, 596
NspV TTCGAA 1 cut(s) 207
PagI TCATGA 1 cut(s) 42
PctI GAATGC 1 cut(s) 127
PfeI GAWTC 3 cut(s) 134, 164, 540
PkrI GCNGC 2 cut(s) 434, 442
PleI GAGTC 2 cut(s) 112, 147
PpsI GAGTC 2 cut(s) 112, 147
PshBI ATTAAT 1 cut(s) 480
Psp6I CCWGG 2 cut(s) 454, 535
PspGI CCWGG 2 cut(s) 454, 535
PspPI GGNCC 1 cut(s) 329
PsuI RGATCY 1 cut(s) 625
RsaI GTAC 2 cut(s) 248, 578
RsaNI GTAC 2 cut(s) 247, 577
RseI CAYNNNNRTG 2 cut(s) 47, 525
SalI GTCGAC 1 cut(s) 644
SaqAI TTAA 4 cut(s) 267, 302, 480, 608
SatI GCNGC 2 cut(s) 433, 441
Sau3AI GATC 2 cut(s) 45, 625
Sau96I GGNCC 1 cut(s) 329
SchI GAGTC 2 cut(s) 113, 147
ScrFI CCNGG 2 cut(s) 456, 537
SduI GDGCHC 1 cut(s) 14
SfcI CTRYAG 1 cut(s) 157
SfuI TTCGAA 1 cut(s) 207
SinI GGWCC 1 cut(s) 329
SmiMI CAYNNNNRTG 2 cut(s) 47, 525
SmlI CTYRAG 1 cut(s) 183
SmoI CTYRAG 1 cut(s) 183
Sse9I AATT 2 cut(s) 403, 488
StyD4I CCNGG 2 cut(s) 454, 535
StyI CCWWGG 1 cut(s) 465
TaaI ACNGT 1 cut(s) 643
TaqI TCGA 3 cut(s) 102, 207, 645
TasI AATT 2 cut(s) 403, 488
TatI WGTACW 2 cut(s) 246, 576
TfiI GAWTC 3 cut(s) 134, 164, 540
Tru1I TTAA 4 cut(s) 267, 302, 480, 608
Tru9I TTAA 4 cut(s) 267, 302, 480, 608
TscAI CASTG 1 cut(s) 400
TseI GCWGC 2 cut(s) 432, 440
TspDTI ATGAA 6 cut(s) 31, 192, 242, 384, 576, 627
TspGWI ACGGA 1 cut(s) 310
TspRI CASTG 1 cut(s) 400
VpaK11BI GGWCC 1 cut(s) 329
VspI ATTAAT 1 cut(s) 480
XapI RAATTY 2 cut(s) 403, 488
XmiI GTMKAC 1 cut(s) 645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.