FvH4_4g26662

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0018425
Physical Location & Seq
Forward (+)
27984678 .. 27985762
1085 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g26662.t1

Sequence Viewer

Length: 651 bp
ATGACCTTAGAAATAAAAAATAAAAATGAGAACGCATACTTGTTTCGTATAAAACCAACAATGGCGTCCTTTGATTCCGAGTACAAAAAATACCACAAAAAGCTCACTGACATTCTAAAAGAAGCTGAATCTCAGATTGTTTTGAAAGAAGGGGAAGAAAACCCAGCAGCAGGGATTAAGGTCAAGAAACAACTTCAAGAAATGATCTTGAAGCTTGAAGATGGCACCTTTGACCCTCCTGAAGTTCCAAATGGGTTTTGGGAGAAATCTCTGTACTATGGCAAGCTCCTCAAGTGCGTGTATGATGTTGGAGCAGCTGTGAAATTAGCATTGCGTATTCTTGGTTCTATTTCGACAGGAGGATTCGCCGGAGCTACCATTGCTGTCATACAATTAGGACAACTGGCTAAAGAGGTAGATGGTTTGCTCAGAGAACTCTGGCGTTATGCTAAAGACTTCATGAAGAAAAGGGAGGAAGGAGTTGAGAAAGATGAAGCCATGGATGTGAAGTTCTCTGATATCATTCTGCTGCTCGGTGACAACTGGAAAGAAGAGTACTGTGTCATTGAGGCTGGAGCACCGTCCACATCCGGCAGCGGCGGAGGTGACGGCGGCCAAGACGGCGGGGAGGAACCCCCGGCCGACCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

217

Amino Acids

23.87

Weight (kDa)

5.02

Isoelectric Point (pI)

39.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018425)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g26662
rosa_chinensis RchiOBHm_Chr4g0419801 RchiOBHm_Chr4g0419851 RchiOBHm_Chr4g0419861
rosa_laevigata RLG00000031520
rosa_roxburghii Rroxscaffold_5G00362610
rosa_samantha Rh4CG235200 Rh4CG235300 Rh5AG060100 Rh5CG066600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 224
AciI CCGC 4 cut(s) 597, 600, 612, 624
AcoI YGGCCR 2 cut(s) 613, 639
AcuI CTGAAG 1 cut(s) 261
AcyI GRCGYC 1 cut(s) 65
AfaI GTAC 3 cut(s) 83, 275, 557
AfiI CCNNNNNNNGG 1 cut(s) 170
AgsI TTSAA 4 cut(s) 145, 197, 211, 218
AloI GAACNNNNNNTCC 2 cut(s) 494, 526
AluBI AGCT 6 cut(s) 103, 125, 214, 286, 317, 374
AluI AGCT 6 cut(s) 103, 125, 214, 286, 317, 374
Alw21I GWGCWC 1 cut(s) 580
AoxI GGCC 2 cut(s) 613, 639
ApeKI GCWGC 4 cut(s) 167, 314, 529, 594
AsuC2I CCSGG 1 cut(s) 638
AsuHPI GGTGA 2 cut(s) 548, 617
BanI GGYRCC 1 cut(s) 224
Bbv12I GWGCWC 1 cut(s) 580
BbvI GCAGC 4 cut(s) 179, 326, 516, 606
BccI CCATC 2 cut(s) 215, 413
BceAI ACGGC 2 cut(s) 625, 637
BcnI CCSGG 1 cut(s) 638
BglI GCCNNNNNGGC 1 cut(s) 621
BisI GCNGC 6 cut(s) 168, 315, 530, 595, 598, 613
BlsI GCNGC 6 cut(s) 169, 316, 531, 596, 599, 614
BmcAI AGTACT 1 cut(s) 557
Bme1390I CCNGG 1 cut(s) 638
BmiI GGNNCC 2 cut(s) 226, 633
BmrFI CCNGG 1 cut(s) 638
BpmI CTGGAG 1 cut(s) 594
BpuEI CTTGAG 1 cut(s) 275
BpuMI CCSGG 1 cut(s) 638
BsaHI GRCGYC 1 cut(s) 65
BsaJI CCNNGG 2 cut(s) 498, 636
BsaXI ACNNNNNCTCC 2 cut(s) 303, 333
Bsc4I CCNNNNNNNGG 1 cut(s) 170
Bse1I ACTGG 2 cut(s) 408, 548
Bse3DI GCAATG 2 cut(s) 329, 378
BseDI CCNNGG 2 cut(s) 498, 636
BseGI GGATG 2 cut(s) 508, 587
BseLI CCNNNNNNNGG 1 cut(s) 170
BseMI GCAATG 2 cut(s) 329, 378
BseMII CTCAG 2 cut(s) 146, 442
BseNI ACTGG 2 cut(s) 408, 548
BseRI GAGGAG 1 cut(s) 278
BseX3I CGGCCG 1 cut(s) 639
BseXI GCAGC 4 cut(s) 179, 326, 516, 606
BseYI CCCAGC 1 cut(s) 163
Bsh1285I CGRYCG 1 cut(s) 642
BshFI GGCC 2 cut(s) 615, 641
BshNI GGYRCC 1 cut(s) 224
BsiEI CGRYCG 1 cut(s) 642
BsiHKAI GWGCWC 1 cut(s) 580
BsiSI CCGG 3 cut(s) 369, 591, 638
BslI CCNNNNNNNGG 1 cut(s) 170
BsnI GGCC 2 cut(s) 615, 641
Bsp1286I GDGCHC 1 cut(s) 580
Bsp143I GATC 1 cut(s) 204
Bsp19I CCATGG 1 cut(s) 498
BspACI CCGC 4 cut(s) 597, 600, 612, 624
BspANI GGCC 2 cut(s) 615, 641
BspCNI CTCAG 2 cut(s) 145, 441
BspHI TCATGA 1 cut(s) 459
BspLI GGNNCC 2 cut(s) 226, 633
BspT107I GGYRCC 1 cut(s) 224
BsrDI GCAATG 2 cut(s) 329, 378
BsrI ACTGG 2 cut(s) 408, 548
BssECI CCNNGG 2 cut(s) 498, 636
BssMI GATC 1 cut(s) 204
BssNI GRCGYC 1 cut(s) 65
BssT1I CCWWGG 1 cut(s) 498
Bst4CI ACNGT 2 cut(s) 560, 582
Bst6I CTCTTC 1 cut(s) 546
BstACI GRCGYC 1 cut(s) 65
BstC8I GCNNGC 1 cut(s) 284
BstDEI CTNAG 3 cut(s) 7, 132, 428
BstDSI CCRYGG 1 cut(s) 498
BstF5I GGATG 2 cut(s) 508, 587
BstKTI GATC 1 cut(s) 207
BstMBI GATC 1 cut(s) 204
BstMCI CGRYCG 1 cut(s) 642
BstMWI GCNNNNNNNGC 2 cut(s) 380, 621
BstSCI CCNGG 1 cut(s) 636
BstV1I GCAGC 4 cut(s) 179, 326, 516, 606
BstZI CGGCCG 1 cut(s) 639
BsuRI GGCC 2 cut(s) 615, 641
BtgI CCRYGG 1 cut(s) 498
BtsCI GGATG 2 cut(s) 508, 587
BtsIMutI CAGTG 2 cut(s) 105, 646
Cac8I GCNNGC 1 cut(s) 284
CciI TCATGA 1 cut(s) 459
CseI GACGC 1 cut(s) 54
Csp6I GTAC 3 cut(s) 82, 274, 556
CviAII CATG 2 cut(s) 460, 499
CviQI GTAC 3 cut(s) 82, 274, 556
DdeI CTNAG 3 cut(s) 7, 132, 428
DpnI GATC 1 cut(s) 206
DpnII GATC 1 cut(s) 204
EaeI YGGCCR 2 cut(s) 613, 639
EagI CGGCCG 1 cut(s) 639
Eam1104I CTCTTC 1 cut(s) 546
EarI CTCTTC 1 cut(s) 546
EciI GGCGGA 1 cut(s) 615
EclXI CGGCCG 1 cut(s) 639
Eco130I CCWWGG 1 cut(s) 498
Eco32I GATATC 1 cut(s) 520
Eco52I CGGCCG 1 cut(s) 639
Eco57I CTGAAG 1 cut(s) 261
EcoRV GATATC 1 cut(s) 520
EcoT14I CCWWGG 1 cut(s) 498
ErhI CCWWGG 1 cut(s) 498
FaeI CATG 2 cut(s) 463, 502
FaiI YATR 8 cut(s) 37, 50, 279, 303, 389, 447, 461, 500
FatI CATG 2 cut(s) 459, 498
FauI CCCGC 1 cut(s) 617
Fnu4HI GCNGC 6 cut(s) 168, 315, 530, 595, 598, 613
FokI GGATG 2 cut(s) 515, 574
Fsp4HI GCNGC 6 cut(s) 168, 315, 530, 595, 598, 613
GluI GCNGC 6 cut(s) 168, 315, 530, 595, 598, 613
GsaI CCCAGC 1 cut(s) 167
GsuI CTGGAG 1 cut(s) 594
HaeIII GGCC 2 cut(s) 615, 641
HapII CCGG 3 cut(s) 369, 591, 638
HgaI GACGC 1 cut(s) 54
Hin1I GRCGYC 1 cut(s) 65
Hin1II CATG 2 cut(s) 463, 502
HindIII AAGCTT 1 cut(s) 212
HinfI GANTC 3 cut(s) 74, 128, 363
HpaII CCGG 3 cut(s) 369, 591, 638
HphI GGTGA 2 cut(s) 548, 617
Hpy166II GTNNAC 1 cut(s) 585
Hpy188I TCNGA 4 cut(s) 79, 135, 431, 517
Hpy188III TCNNGA 5 cut(s) 184, 197, 208, 239, 460
Hpy8I GTNNAC 1 cut(s) 585
HpyAV CCTTC 2 cut(s) 143, 470
HpyCH4III ACNGT 2 cut(s) 560, 582
HpyF10VI GCNNNNNNNGC 2 cut(s) 380, 621
HpyF3I CTNAG 3 cut(s) 7, 132, 428
Hsp92I GRCGYC 1 cut(s) 65
Hsp92II CATG 2 cut(s) 463, 502
Kzo9I GATC 1 cut(s) 204
LmnI GCTCC 4 cut(s) 291, 311, 371, 575
Lsp1109I GCAGC 4 cut(s) 179, 326, 516, 606
MaeIII GTNAC 2 cut(s) 536, 605
MalI GATC 1 cut(s) 206
MboI GATC 1 cut(s) 204
MboII GAAGA 4 cut(s) 167, 230, 475, 563
MhlI GDGCHC 1 cut(s) 580
MluCI AATT 2 cut(s) 323, 392
MmeI TCCRAC 1 cut(s) 289
MnlI CCTC 8 cut(s) 246, 299, 353, 406, 466, 562, 596, 622
MseI TTAA 1 cut(s) 177
MslI CAYNNNNRTG 1 cut(s) 503
MspA1I CMGCKG 2 cut(s) 317, 597
MspI CCGG 3 cut(s) 369, 591, 638
MspR9I CCNGG 1 cut(s) 638
MwoI GCNNNNNNNGC 2 cut(s) 380, 621
NciI CCSGG 1 cut(s) 638
NcoI CCATGG 1 cut(s) 498
NdeII GATC 1 cut(s) 204
NlaIII CATG 2 cut(s) 463, 502
NlaIV GGNNCC 2 cut(s) 226, 633
NmuCI GTSAC 2 cut(s) 536, 605
PagI TCATGA 1 cut(s) 459
PfeI GAWTC 3 cut(s) 74, 128, 363
PkrI GCNGC 6 cut(s) 169, 316, 531, 596, 599, 614
PspFI CCCAGC 1 cut(s) 163
PspN4I GGNNCC 2 cut(s) 226, 633
PsrI GAACNNNNNNTAC 2 cut(s) 328, 360
PvuII CAGCTG 1 cut(s) 317
RsaI GTAC 3 cut(s) 83, 275, 557
RsaNI GTAC 3 cut(s) 82, 274, 556
RseI CAYNNNNRTG 1 cut(s) 503
SaqAI TTAA 1 cut(s) 177
SatI GCNGC 6 cut(s) 168, 315, 530, 595, 598, 613
Sau3AI GATC 1 cut(s) 204
ScaI AGTACT 1 cut(s) 557
ScrFI CCNGG 1 cut(s) 638
SduI GDGCHC 1 cut(s) 580
SmiMI CAYNNNNRTG 1 cut(s) 503
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
Sse9I AATT 2 cut(s) 323, 392
SsiI CCGC 4 cut(s) 597, 600, 612, 624
StyD4I CCNGG 1 cut(s) 636
StyI CCWWGG 1 cut(s) 498
TaaI ACNGT 2 cut(s) 560, 582
TaqI TCGA 1 cut(s) 353
TasI AATT 2 cut(s) 323, 392
TatI WGTACW 3 cut(s) 81, 273, 555
TauI GCSGC 2 cut(s) 600, 615
TfiI GAWTC 3 cut(s) 74, 128, 363
Tru1I TTAA 1 cut(s) 177
Tru9I TTAA 1 cut(s) 177
TscAI CASTG 1 cut(s) 112
TseFI GTSAC 2 cut(s) 536, 605
TseI GCWGC 4 cut(s) 167, 314, 529, 594
Tsp45I GTSAC 2 cut(s) 536, 605
TspDTI ATGAA 3 cut(s) 448, 476, 507
TspRI CASTG 1 cut(s) 112
XcmI CCANNNNNNNNNTGG 1 cut(s) 255
ZrmI AGTACT 1 cut(s) 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.