Rh5CG066600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0018425
Physical Location & Seq
Forward (+)
5045855 .. 5046978
1124 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG066600.1

Sequence Viewer

Length: 561 bp
ATGGCATCTTGCCCAGAATTCAACAATTCCCAAAGAACAAATGAAATTTCCCAGAAATTTAAGCACATTCTTGAAGTTGCTGACTCTAAAATTGCTGAGCTCATTGAACAAAATGGTGAGGCTTCCCCTGAAATTCTTCAAAACATTCTTCAAGCCCAGAAATCGATCAAAGATTTGATCTTGGAGTACAACCCTAGCTCAACTGAAGATGGGTTCAGTTTTGAGGTACCACCTCATTTTCAAGCCACTCCCGAGAGCTCTGCACAACCATATTTGCATTACTGGAAGCTGCTTCAGTCCGTCACTGGAATCTTGAAGGCGATAAAAAAGTTGATGGGCATTCTGGCCAGCTTTCCCGCCGGCGGCATCGTCGGCACCGCCGTCATCGGCTTCCAACTGGCCCAACTCGCTGCGGAAGCCATGGGGCTTCTTCGTGATCTCATCCAGAATCTTACAGCCCTGGCCACAAAGAGAAAGCAGGAGATTCAAGTTGAGACAGTGATGGATCATATCCTTTCTACATTACCAGAAAAACGAGTAAAGATGGAGAGTAACAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

20.55

Weight (kDa)

5.6

Isoelectric Point (pI)

64.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018425)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g26662
rosa_chinensis RchiOBHm_Chr4g0419801 RchiOBHm_Chr4g0419851 RchiOBHm_Chr4g0419861
rosa_laevigata RLG00000031520
rosa_roxburghii Rroxscaffold_5G00362610
rosa_samantha Rh4CG235200 Rh4CG235300 Rh5AG060100 Rh5CG066600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 226
AccB1I GGYRCC 2 cut(s) 226, 374
AciI CCGC 4 cut(s) 357, 363, 378, 413
AclWI GGATC 1 cut(s) 513
AcoI YGGCCR 2 cut(s) 345, 462
AcsI RAATTY 4 cut(s) 17, 45, 56, 132
AcuI CTGAAG 2 cut(s) 225, 278
AfaI GTAC 2 cut(s) 188, 228
AfiI CCNNNNNNNGG 1 cut(s) 362
AgsI TTSAA 8 cut(s) 22, 74, 107, 140, 152, 242, 316, 488
AjnI CCWGG 1 cut(s) 459
AluBI AGCT 6 cut(s) 100, 198, 258, 289, 351, 558
AluI AGCT 6 cut(s) 100, 198, 258, 289, 351, 558
Alw21I GWGCWC 2 cut(s) 102, 260
Alw26I GTCTC 1 cut(s) 488
AlwI GGATC 1 cut(s) 513
Ama87I CYCGRG 1 cut(s) 251
AoxI GGCC 3 cut(s) 345, 399, 462
ApeKI GCWGC 2 cut(s) 289, 410
ApoI RAATTY 4 cut(s) 17, 45, 56, 132
Asp700I GAANNNNTTC 1 cut(s) 135
Asp718I GGTACC 1 cut(s) 226
AspS9I GGNCC 1 cut(s) 400
AsuHPI GGTGA 1 cut(s) 128
AvaI CYCGRG 1 cut(s) 251
BalI TGGCCA 2 cut(s) 347, 464
BanI GGYRCC 2 cut(s) 226, 374
BanII GRGCYC 2 cut(s) 102, 260
Bbv12I GWGCWC 2 cut(s) 102, 260
BbvI GCAGC 2 cut(s) 276, 397
BccI CCATC 4 cut(s) 203, 328, 496, 538
BceAI ACGGC 1 cut(s) 365
BcgI CGANNNNNNTGC 2 cut(s) 242, 276
BciT130I CCWGG 1 cut(s) 461
BcoDI GTCTC 1 cut(s) 488
BfaI CTAG 2 cut(s) 195, 559
BisI GCNGC 3 cut(s) 290, 364, 411
BlpI GCTNAGC 1 cut(s) 96
BlsI GCNGC 3 cut(s) 291, 365, 412
Bme1390I CCNGG 1 cut(s) 461
BmeT110I CYCGRG 1 cut(s) 251
BmgT120I GGNCC 1 cut(s) 400
BmiI GGNNCC 2 cut(s) 228, 376
BmrFI CCNGG 1 cut(s) 461
BmsI GCATC 2 cut(s) 14, 375
Bpu1102I GCTNAGC 1 cut(s) 96
Bsa29I ATCGAT 1 cut(s) 164
BsaJI CCNNGG 2 cut(s) 420, 459
Bsc4I CCNNNNNNNGG 1 cut(s) 362
Bse118I RCCGGY 1 cut(s) 359
Bse1I ACTGG 3 cut(s) 287, 310, 402
BseBI CCWGG 1 cut(s) 461
BseCI ATCGAT 1 cut(s) 164
BseDI CCNNGG 2 cut(s) 420, 459
BseGI GGATG 1 cut(s) 441
BseLI CCNNNNNNNGG 1 cut(s) 362
BseMII CTCAG 1 cut(s) 87
BseNI ACTGG 3 cut(s) 287, 310, 402
BseXI GCAGC 2 cut(s) 276, 397
BsgI GTGCAG 1 cut(s) 246
BshFI GGCC 3 cut(s) 347, 401, 464
BshNI GGYRCC 2 cut(s) 226, 374
BshVI ATCGAT 1 cut(s) 164
BsiHKAI GWGCWC 2 cut(s) 102, 260
BsiHKCI CYCGRG 1 cut(s) 251
BsiSI CCGG 1 cut(s) 360
BslI CCNNNNNNNGG 1 cut(s) 362
BsmAI GTCTC 1 cut(s) 488
BsmI GAATGC 1 cut(s) 339
BsnI GGCC 3 cut(s) 347, 401, 464
BsoBI CYCGRG 1 cut(s) 251
Bsp1286I GDGCHC 2 cut(s) 102, 260
Bsp143I GATC 4 cut(s) 165, 177, 436, 505
Bsp1720I GCTNAGC 1 cut(s) 96
Bsp19I CCATGG 1 cut(s) 420
BspACI CCGC 4 cut(s) 357, 363, 378, 413
BspANI GGCC 3 cut(s) 347, 401, 464
BspCNI CTCAG 1 cut(s) 88
BspDI ATCGAT 1 cut(s) 164
BspLI GGNNCC 2 cut(s) 228, 376
BspPI GGATC 1 cut(s) 513
BspT107I GGYRCC 2 cut(s) 226, 374
BsrFI RCCGGY 1 cut(s) 359
BsrI ACTGG 3 cut(s) 287, 310, 402
BssAI RCCGGY 1 cut(s) 359
BssECI CCNNGG 2 cut(s) 420, 459
BssMI GATC 4 cut(s) 165, 177, 436, 505
BssT1I CCWWGG 1 cut(s) 420
Bst2UI CCWGG 1 cut(s) 461
Bst4CI ACNGT 1 cut(s) 499
BstC8I GCNNGC 2 cut(s) 349, 361
BstDEI CTNAG 1 cut(s) 96
BstDSI CCRYGG 1 cut(s) 420
BstF5I GGATG 1 cut(s) 441
BstKTI GATC 4 cut(s) 168, 180, 439, 508
BstMAI GTCTC 1 cut(s) 488
BstMBI GATC 4 cut(s) 165, 177, 436, 505
BstMWI GCNNNNNNNGC 3 cut(s) 372, 407, 416
BstNI CCWGG 1 cut(s) 461
BstSCI CCNGG 1 cut(s) 459
BstV1I GCAGC 2 cut(s) 276, 397
Bsu15I ATCGAT 1 cut(s) 164
BsuRI GGCC 3 cut(s) 347, 401, 464
BsuTUI ATCGAT 1 cut(s) 164
BtgI CCRYGG 1 cut(s) 420
BtsCI GGATG 1 cut(s) 441
BtsIMutI CAGTG 2 cut(s) 303, 504
Cac8I GCNNGC 2 cut(s) 349, 361
Cfr10I RCCGGY 1 cut(s) 359
Cfr13I GGNCC 1 cut(s) 400
ClaI ATCGAT 1 cut(s) 164
Csp6I GTAC 2 cut(s) 187, 227
CviAII CATG 1 cut(s) 421
CviQI GTAC 2 cut(s) 187, 227
DdeI CTNAG 1 cut(s) 96
DpnI GATC 4 cut(s) 167, 179, 438, 507
DpnII GATC 4 cut(s) 165, 177, 436, 505
EaeI YGGCCR 2 cut(s) 345, 462
Ecl136II GAGCTC 2 cut(s) 100, 258
Eco130I CCWWGG 1 cut(s) 420
Eco24I GRGCYC 2 cut(s) 102, 260
Eco53kI GAGCTC 2 cut(s) 100, 258
Eco57I CTGAAG 2 cut(s) 225, 278
Eco88I CYCGRG 1 cut(s) 251
EcoICRI GAGCTC 2 cut(s) 100, 258
EcoRI GAATTC 1 cut(s) 17
EcoRII CCWGG 1 cut(s) 459
EcoT14I CCWWGG 1 cut(s) 420
EcoT38I GRGCYC 2 cut(s) 102, 260
ErhI CCWWGG 1 cut(s) 420
FaeI CATG 1 cut(s) 424
FaiI YATR 3 cut(s) 271, 422, 510
FatI CATG 1 cut(s) 420
FauI CCCGC 1 cut(s) 364
Fnu4HI GCNGC 3 cut(s) 290, 364, 411
FokI GGATG 1 cut(s) 428
FriOI GRGCYC 2 cut(s) 102, 260
Fsp4HI GCNGC 3 cut(s) 290, 364, 411
FspBI CTAG 2 cut(s) 195, 559
GluI GCNGC 3 cut(s) 290, 364, 411
HaeIII GGCC 3 cut(s) 347, 401, 464
HapII CCGG 1 cut(s) 360
Hin1II CATG 1 cut(s) 424
HinfI GANTC 4 cut(s) 83, 309, 448, 484
HpaII CCGG 1 cut(s) 360
HphI GGTGA 1 cut(s) 128
Hpy188III TCNNGA 5 cut(s) 71, 251, 313, 434, 445
Hpy99I CGWCG 1 cut(s) 374
HpyAV CCTTC 1 cut(s) 310
HpyCH4III ACNGT 1 cut(s) 499
HpyCH4V TGCA 2 cut(s) 263, 277
HpyF10VI GCNNNNNNNGC 3 cut(s) 372, 407, 416
HpyF3I CTNAG 1 cut(s) 96
Hsp92II CATG 1 cut(s) 424
KpnI GGTACC 1 cut(s) 230
KroI GCCGGC 1 cut(s) 359
KroNI GCCGGC 1 cut(s) 361
Kzo9I GATC 4 cut(s) 165, 177, 436, 505
Lsp1109I GCAGC 2 cut(s) 276, 397
LweI GCATC 2 cut(s) 14, 375
MaeI CTAG 2 cut(s) 195, 559
MaeIII GTNAC 2 cut(s) 301, 551
MalI GATC 4 cut(s) 167, 179, 438, 507
MboI GATC 4 cut(s) 165, 177, 436, 505
MboII GAAGA 4 cut(s) 128, 140, 218, 422
MhlI GDGCHC 2 cut(s) 102, 260
MlsI TGGCCA 2 cut(s) 347, 464
MluCI AATT 6 cut(s) 17, 25, 45, 56, 90, 132
MluNI TGGCCA 2 cut(s) 347, 464
MlyI GAGTC 1 cut(s) 77
MmeI TCCRAC 1 cut(s) 418
MnlI CCTC 3 cut(s) 112, 217, 243
Mox20I TGGCCA 2 cut(s) 347, 464
MreI CGCCGGCG 1 cut(s) 359
MroNI GCCGGC 1 cut(s) 359
MroXI GAANNNNTTC 1 cut(s) 135
MscI TGGCCA 2 cut(s) 347, 464
MseI TTAA 1 cut(s) 60
Msp20I TGGCCA 2 cut(s) 347, 464
MspI CCGG 1 cut(s) 360
MspR9I CCNGG 1 cut(s) 461
Mva1269I GAATGC 1 cut(s) 339
MvaI CCWGG 1 cut(s) 461
MwoI GCNNNNNNNGC 3 cut(s) 372, 407, 416
NaeI GCCGGC 1 cut(s) 361
NcoI CCATGG 1 cut(s) 420
NdeII GATC 4 cut(s) 165, 177, 436, 505
NgoMIV GCCGGC 1 cut(s) 359
NlaIII CATG 1 cut(s) 424
NlaIV GGNNCC 2 cut(s) 228, 376
NmuCI GTSAC 1 cut(s) 301
PcsI WCGNNNNNNNCGW 1 cut(s) 378
PctI GAATGC 1 cut(s) 339
PdiI GCCGGC 1 cut(s) 361
PdmI GAANNNNTTC 1 cut(s) 135
PfeI GAWTC 3 cut(s) 309, 448, 484
PkrI GCNGC 3 cut(s) 291, 365, 412
PleI GAGTC 1 cut(s) 77
PpsI GAGTC 1 cut(s) 77
Psp124BI GAGCTC 2 cut(s) 102, 260
Psp6I CCWGG 1 cut(s) 459
PspGI CCWGG 1 cut(s) 459
PspN4I GGNNCC 2 cut(s) 228, 376
PspPI GGNCC 1 cut(s) 400
RsaI GTAC 2 cut(s) 188, 228
RsaNI GTAC 2 cut(s) 187, 227
SacI GAGCTC 2 cut(s) 102, 260
SaqAI TTAA 1 cut(s) 60
SatI GCNGC 3 cut(s) 290, 364, 411
Sau3AI GATC 4 cut(s) 165, 177, 436, 505
Sau96I GGNCC 1 cut(s) 400
SchI GAGTC 1 cut(s) 77
ScrFI CCNGG 1 cut(s) 461
SduI GDGCHC 2 cut(s) 102, 260
SetI ASST 8 cut(s) 102, 200, 228, 235, 260, 291, 353, 560
SfaNI GCATC 2 cut(s) 14, 375
SgrAI CRCCGGYG 1 cut(s) 359
Sse9I AATT 6 cut(s) 17, 25, 45, 56, 90, 132
SsiI CCGC 4 cut(s) 357, 363, 378, 413
SspMI CTAG 2 cut(s) 195, 559
SstI GAGCTC 2 cut(s) 102, 260
StyD4I CCNGG 1 cut(s) 459
StyI CCWWGG 1 cut(s) 420
TaaI ACNGT 1 cut(s) 499
TaqI TCGA 1 cut(s) 164
TasI AATT 6 cut(s) 17, 25, 45, 56, 90, 132
TatI WGTACW 1 cut(s) 186
TauI GCSGC 1 cut(s) 366
TfiI GAWTC 3 cut(s) 309, 448, 484
Tru1I TTAA 1 cut(s) 60
Tru9I TTAA 1 cut(s) 60
TscAI CASTG 2 cut(s) 310, 504
TseFI GTSAC 1 cut(s) 301
TseI GCWGC 2 cut(s) 289, 410
Tsp45I GTSAC 1 cut(s) 301
TspDTI ATGAA 1 cut(s) 57
TspGWI ACGGA 1 cut(s) 289
TspRI CASTG 2 cut(s) 310, 504
XapI RAATTY 4 cut(s) 17, 45, 56, 132
XmnI GAANNNNTTC 1 cut(s) 135
XspI CTAG 2 cut(s) 195, 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.