Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018425

Physical Location & Seq

Genomic Coordinates Forward (+)

45341877 .. 45344719

Gene Structure 2843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38965

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGTCAGTCTCAATAGTTTTAAGACTAGGGATTAACCATTTGAAGGGTAGGCTGCTTGGATCACCTGGTACTCTTATGGCACGTCAAATTGGAAAAAAAAATGTTGAATGGGAAAGATCCAAAGGAGATGGAAATGAATTGCATGTCATAATCTTTGATGAAGTCGATGCTATTTGCAAGATAGATGGTGGCATCAATTTGCTGCTCATGGCGACAAAATTGACCATACTCCTCCCTCCCTCCCTACCGTGTTCCACTTGGAACTTGAATATAGTGACAGTGATGCTGCTCTGCATCTGTCAACTACTTAATGGCATGGTGGATTGTGGGGAGCAACATAAGCATATCTATCAAAGGGCTATCCTACTTGTGGAGCAAGTTAAAATCAAGTGGCAGAAGCCCGCTTGTTACATGTCTTCTGGAAGGTCCTATTGGCAGTTACTTATCATCTTGGACAGTGGTAAATCTTCACTAGCAGCTACTGTTGGCATCGACAGTGATTTCCCCTATGTTAAGATTGTTTTTGAAGATGCATACAAGTCACCATTGAGCTTTATTATCCTGGAGTATATTGAAAGGTTACTAGAGTATATTGCTATTGGTCCGAGGTTTTCAAATTTGATATCTGAAACACCTATGCTCCTTCTCAAGTGTACTCCCTTCCAAAAAGGGGAAAAAGCTTCTCGGTTTTGGTACAACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0005911 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04138 ko04721 ko04727 ko04962 map04138 map04721 map04727 map04962

Pfam Domains

Protein Families

AAA CDC48_2 CDC48_N

Protein Analysis

234

Amino Acids

26.4

Weight (kDa)

8.77

Isoelectric Point (pI)

39.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018425)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26662
rosa_chinensis	RchiOBHm_Chr4g0419801 RchiOBHm_Chr4g0419851 RchiOBHm_Chr4g0419861
rosa_laevigata	RLG00000031520
rosa_roxburghii	Rroxscaffold_5G00362610
rosa_samantha	Rh4CG235200 Rh4CG235300 Rh5AG060100 Rh5CG066600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	402
AclWI	GGATC	2 cut(s)	67, 111
AcsI	RAATTY	1 cut(s)	616
AfaI	GTAC	3 cut(s)	70, 655, 695
AfiI	CCNNNNNNNGG	3 cut(s)	43, 370, 670
AflIII	ACRYGT	1 cut(s)	411
AgsI	TTSAA	6 cut(s)	43, 107, 268, 527, 575, 615
AjiI	CACGTC	1 cut(s)	83
AjnI	CCWGG	2 cut(s)	64, 561
AjuI	GAANNNNNNNTTGG	2 cut(s)	415, 447
AluBI	AGCT	3 cut(s)	479, 552, 680
AluI	AGCT	3 cut(s)	479, 552, 680
Alw26I	GTCTC	1 cut(s)	13
AlwI	GGATC	2 cut(s)	67, 111
AlwNI	CAGNNNCTG	1 cut(s)	482
ApeKI	GCWGC	4 cut(s)	52, 202, 286, 476
ApoI	RAATTY	1 cut(s)	616
AspS9I	GGNCC	2 cut(s)	426, 602
AsuHPI	GGTGA	2 cut(s)	54, 534
AvaII	GGWCC	2 cut(s)	426, 602
BbsI	GAAGAC	1 cut(s)	408
BbvI	GCAGC	4 cut(s)	39, 189, 273, 488
BccI	CCATC	2 cut(s)	122, 179
BciT130I	CCWGG	2 cut(s)	66, 563
BcoDI	GTCTC	1 cut(s)	13
BfaI	CTAG	3 cut(s)	26, 473, 584
BisI	GCNGC	4 cut(s)	53, 203, 287, 477
BlsI	GCNGC	4 cut(s)	54, 204, 288, 478
Bme1390I	CCNGG	2 cut(s)	66, 563
Bme18I	GGWCC	2 cut(s)	426, 602
BmgBI	CACGTC	1 cut(s)	83
BmgT120I	GGNCC	2 cut(s)	426, 602
BmrFI	CCNGG	2 cut(s)	66, 563
BmsI	GCATC	6 cut(s)	157, 201, 273, 303, 498, 520
BpiI	GAAGAC	1 cut(s)	408
BpmI	CTGGAG	1 cut(s)	584
BpuEI	CTTGAG	1 cut(s)	632
BsaJI	CCNNGG	1 cut(s)	605
BsaXI	ACNNNNNCTCC	2 cut(s)	624, 654
Bsc4I	CCNNNNNNNGG	3 cut(s)	43, 370, 670
BseBI	CCWGG	2 cut(s)	66, 563
BseDI	CCNNGG	1 cut(s)	605
BseLI	CCNNNNNNNGG	3 cut(s)	43, 370, 670
BseRI	GAGGAG	1 cut(s)	221
BseXI	GCAGC	4 cut(s)	39, 189, 273, 488
BslI	CCNNNNNNNGG	3 cut(s)	43, 370, 670
BsmAI	GTCTC	1 cut(s)	13
Bsp143I	GATC	2 cut(s)	59, 116
BspACI	CCGC	1 cut(s)	402
BspPI	GGATC	2 cut(s)	67, 111
BssECI	CCNNGG	1 cut(s)	605
BssMI	GATC	2 cut(s)	59, 116
Bst2UI	CCWGG	2 cut(s)	66, 563
Bst4CI	ACNGT	5 cut(s)	249, 280, 458, 484, 497
BstC8I	GCNNGC	1 cut(s)	402
BstKTI	GATC	2 cut(s)	62, 119
BstMAI	GTCTC	1 cut(s)	13
BstMBI	GATC	2 cut(s)	59, 116
BstMWI	GCNNNNNNNGC	1 cut(s)	340
BstNI	CCWGG	2 cut(s)	66, 563
BstNSI	RCATGY	2 cut(s)	146, 415
BstSCI	CCNGG	2 cut(s)	64, 561
BstV1I	GCAGC	4 cut(s)	39, 189, 273, 488
BstV2I	GAAGAC	1 cut(s)	408
BstX2I	RGATCY	1 cut(s)	116
BstYI	RGATCY	1 cut(s)	116
BtrI	CACGTC	1 cut(s)	83
BtsIMutI	CAGTG	3 cut(s)	285, 463, 502
Cac8I	GCNNGC	1 cut(s)	402
CaiI	CAGNNNCTG	1 cut(s)	482
Cfr13I	GGNCC	2 cut(s)	426, 602
CsiI	ACCWGGT	1 cut(s)	64
Csp6I	GTAC	3 cut(s)	69, 654, 694
CviAII	CATG	4 cut(s)	143, 208, 316, 412
CviJI	RGCY	6 cut(s)	52, 359, 400, 479, 552, 680
CviKI_1	RGCY	6 cut(s)	52, 359, 400, 479, 552, 680
CviQI	GTAC	3 cut(s)	69, 654, 694
DpnI	GATC	2 cut(s)	61, 118
DpnII	GATC	2 cut(s)	59, 116
Eco32I	GATATC	1 cut(s)	624
Eco47I	GGWCC	2 cut(s)	426, 602
EcoO109I	RGGNCCY	1 cut(s)	426
EcoRII	CCWGG	2 cut(s)	64, 561
EcoRV	GATATC	1 cut(s)	624
EcoT22I	ATGCAT	1 cut(s)	535
FaeI	CATG	4 cut(s)	146, 211, 319, 415
FatI	CATG	4 cut(s)	142, 207, 315, 411
FauI	CCCGC	1 cut(s)	409
Fnu4HI	GCNGC	4 cut(s)	53, 203, 287, 477
Fsp4HI	GCNGC	4 cut(s)	53, 203, 287, 477
FspBI	CTAG	3 cut(s)	26, 473, 584
GluI	GCNGC	4 cut(s)	53, 203, 287, 477
GsuI	CTGGAG	1 cut(s)	584
Hin1II	CATG	4 cut(s)	146, 211, 319, 415
HincII	GTYRAC	1 cut(s)	302
HindII	GTYRAC	1 cut(s)	302
HindIII	AAGCTT	1 cut(s)	678
HphI	GGTGA	2 cut(s)	54, 534
Hpy166II	GTNNAC	2 cut(s)	302, 654
Hpy188I	TCNGA	2 cut(s)	606, 628
Hpy188III	TCNNGA	1 cut(s)	420
Hpy8I	GTNNAC	2 cut(s)	302, 654
HpyAV	CCTTC	4 cut(s)	37, 417, 653, 670
HpyCH4III	ACNGT	5 cut(s)	249, 280, 458, 484, 497
HpyCH4IV	ACGT	1 cut(s)	82
HpyCH4V	TGCA	4 cut(s)	142, 177, 294, 533
HpyF10VI	GCNNNNNNNGC	1 cut(s)	340
HpySE526I	ACGT	1 cut(s)	82
Hsp92II	CATG	4 cut(s)	146, 211, 319, 415
Kzo9I	GATC	2 cut(s)	59, 116
LmnI	GCTCC	3 cut(s)	331, 373, 645
LpnPI	CCDG	5 cut(s)	51, 78, 405, 548, 575
Lsp1109I	GCAGC	4 cut(s)	39, 189, 273, 488
LweI	GCATC	6 cut(s)	157, 201, 273, 303, 498, 520
MabI	ACCWGGT	1 cut(s)	64
MaeI	CTAG	3 cut(s)	26, 473, 584
MaeII	ACGT	1 cut(s)	82
MaeIII	GTNAC	5 cut(s)	274, 407, 438, 540, 579
MalI	GATC	2 cut(s)	61, 118
MboI	GATC	2 cut(s)	59, 116
MboII	GAAGA	3 cut(s)	408, 459, 539
MflI	RGATCY	1 cut(s)	116
MluCI	AATT	5 cut(s)	87, 137, 196, 218, 616
MnlI	CCTC	4 cut(s)	242, 246, 250, 600
Mph1103I	ATGCAT	1 cut(s)	535
MseI	TTAA	5 cut(s)	20, 33, 309, 381, 513
MspR9I	CCNGG	2 cut(s)	66, 563
MvaI	CCWGG	2 cut(s)	66, 563
MwoI	GCNNNNNNNGC	1 cut(s)	340
NdeII	GATC	2 cut(s)	59, 116
NlaIII	CATG	4 cut(s)	146, 211, 319, 415
NmuCI	GTSAC	2 cut(s)	274, 540
NsiI	ATGCAT	1 cut(s)	535
NspI	RCATGY	2 cut(s)	146, 415
PciI	ACATGT	1 cut(s)	411
PfoI	TCCNGGA	1 cut(s)	561
PkrI	GCNGC	4 cut(s)	54, 204, 288, 478
PpuMI	RGGWCCY	1 cut(s)	426
PscI	ACATGT	1 cut(s)	411
Psp5II	RGGWCCY	1 cut(s)	426
Psp6I	CCWGG	2 cut(s)	64, 561
PspGI	CCWGG	2 cut(s)	64, 561
PspPI	GGNCC	2 cut(s)	426, 602
PspPPI	RGGWCCY	1 cut(s)	426
PstNI	CAGNNNCTG	1 cut(s)	482
PsuI	RGATCY	1 cut(s)	116
RsaI	GTAC	3 cut(s)	70, 655, 695
RsaNI	GTAC	3 cut(s)	69, 654, 694
SaqAI	TTAA	5 cut(s)	20, 33, 309, 381, 513
SatI	GCNGC	4 cut(s)	53, 203, 287, 477
Sau3AI	GATC	2 cut(s)	59, 116
Sau96I	GGNCC	2 cut(s)	426, 602
ScrFI	CCNGG	2 cut(s)	66, 563
SetI	ASST	9 cut(s)	67, 85, 428, 481, 554, 581, 611, 637, 682
SexAI	ACCWGGT	1 cut(s)	64
SfaNI	GCATC	6 cut(s)	157, 201, 273, 303, 498, 520
SinI	GGWCC	2 cut(s)	426, 602
SmlI	CTYRAG	1 cut(s)	647
SmoI	CTYRAG	1 cut(s)	647
Sse9I	AATT	5 cut(s)	87, 137, 196, 218, 616
SsiI	CCGC	1 cut(s)	402
SspMI	CTAG	3 cut(s)	26, 473, 584
StyD4I	CCNGG	2 cut(s)	64, 561
TaaI	ACNGT	5 cut(s)	249, 280, 458, 484, 497
TaiI	ACGT	1 cut(s)	85
TaqI	TCGA	2 cut(s)	165, 492
TasI	AATT	5 cut(s)	87, 137, 196, 218, 616
TatI	WGTACW	1 cut(s)	653
Tru1I	TTAA	5 cut(s)	20, 33, 309, 381, 513
Tru9I	TTAA	5 cut(s)	20, 33, 309, 381, 513
TscAI	CASTG	3 cut(s)	285, 463, 502
TseFI	GTSAC	2 cut(s)	274, 540
TseI	GCWGC	4 cut(s)	52, 202, 286, 476
Tsp45I	GTSAC	2 cut(s)	274, 540
TspDTI	ATGAA	2 cut(s)	150, 174
TspRI	CASTG	3 cut(s)	285, 463, 502
VpaK11BI	GGWCC	2 cut(s)	426, 602
XapI	RAATTY	1 cut(s)	616
XceI	RCATGY	2 cut(s)	146, 415
XspI	CTAG	3 cut(s)	26, 473, 584
Zsp2I	ATGCAT	1 cut(s)	535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.