Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0018425

Physical Location & Seq

Genomic Coordinates Forward (+)

43628138 .. 43635748

Gene Structure 7611 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00362610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGAAAAGAAAAAAGAAGAAGAAGATTCTAGGCCATTATTGTCTCGTGTTCCTGAGCTATGTCATCAGTGTGACTGAAAGACTACTTGCTTGTGCAGAACTGGAAGGTGTTGTTAAAAGTGCAGTATCATTTGCTTTGAATAAACAACTAAGTTTGGATGATCTTACCAAGCCATATCTTACCAAACCAGTTGATGAAGCGAGTATTAAGGTTACTAGGGATGATTTTCTACGTGCACTCCATGATATTGTACCTGCAGTTGGAGCCTCTGCTGATGACCTCGAAAGATGCAGGTTACTAGAGTATATTGCTATTGGTCTGAGGTTTTCAAATTTGACATCTAAAACAGTGATGCTCCTTCTCAAGCGCACTCCAAAGGTGCTAGAACAGTTAAATATCTTTGCTCATGAAGACATAGATGCAGCTGCAGAGGCCCTAAATGATCTTCTAAGTTCTAGTTGTTTGTTCCATTTCTTGACTGGTGCAAGCAGCACATGGAAGCCATCTGAGGTCCCAATTGATGACCAAATTCTTGCAAAAGCCGACTCCAAAGTTAGTGACCTCTTTCAAGAAAATGGTGAGGCTTCCCCTAAAGTTCTCCAAAAGCTTCGTCAAGCCCAGAGATCGATCAAAGATCTCATCTTGGAGTGCAACAACTCCATTCCTAATGCTGAGAGCGTTCTACAAACCCTTTTGCATTTCTGGAAACTTTATCAGTCGGTTTCTGGAATCTTGAACGTGACAACAACAATGATGACTCTTCTGGCGACCCTTCCCTGCGGCGGCATCGTCGGCACAGACGTCATCAGCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0005911 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04138 ko04721 ko04727 ko04962 map04138 map04721 map04727 map04962

Pfam Domains

Protein Families

AAA CDC48_2 CDC48_N

Protein Analysis

271

Amino Acids

29.97

Weight (kDa)

6.95

Isoelectric Point (pI)

35.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018425)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26662
rosa_chinensis	RchiOBHm_Chr4g0419801 RchiOBHm_Chr4g0419851 RchiOBHm_Chr4g0419861
rosa_laevigata	RLG00000031520
rosa_roxburghii	Rroxscaffold_5G00362610
rosa_samantha	Rh4CG235200 Rh4CG235300 Rh5AG060100 Rh5CG066600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	804
Acc36I	ACCTGC	2 cut(s)	262, 282
AciI	CCGC	2 cut(s)	780, 783
AcsI	RAATTY	2 cut(s)	331, 528
AcyI	GRCGYC	1 cut(s)	801
AfaI	GTAC	1 cut(s)	252
AfiI	CCNNNNNNNGG	2 cut(s)	260, 782
AgsI	TTSAA	4 cut(s)	139, 330, 569, 736
AluBI	AGCT	4 cut(s)	57, 425, 607, 810
AluI	AGCT	4 cut(s)	57, 425, 607, 810
Alw21I	GWGCWC	1 cut(s)	238
Alw26I	GTCTC	1 cut(s)	47
Alw44I	GTGCAC	1 cut(s)	234
AoxI	GGCC	2 cut(s)	31, 432
ApaLI	GTGCAC	1 cut(s)	234
ApeKI	GCWGC	3 cut(s)	422, 425, 489
ApoI	RAATTY	2 cut(s)	331, 528
ArsI	GACNNNNNNTTYG	2 cut(s)	595, 627
AspLEI	GCGC	1 cut(s)	369
AspS9I	GGNCC	2 cut(s)	433, 511
AsuHPI	GGTGA	1 cut(s)	590
AvaII	GGWCC	1 cut(s)	511
BaeGI	GKGCMC	1 cut(s)	238
BauI	CACGAG	1 cut(s)	44
BbsI	GAAGAC	1 cut(s)	417
Bbv12I	GWGCWC	1 cut(s)	238
BbvI	GCAGC	3 cut(s)	412, 434, 501
BccI	CCATC	1 cut(s)	511
BcoDI	GTCTC	1 cut(s)	47
BfaI	CTAG	5 cut(s)	29, 216, 299, 383, 456
BfmI	CTRYAG	2 cut(s)	255, 426
BfuAI	ACCTGC	2 cut(s)	262, 282
BglII	AGATCT	1 cut(s)	634
BisI	GCNGC	5 cut(s)	423, 426, 490, 781, 784
BlsI	GCNGC	5 cut(s)	424, 427, 491, 782, 785
Bme18I	GGWCC	1 cut(s)	511
BmgT120I	GGNCC	2 cut(s)	433, 511
BmiI	GGNNCC	2 cut(s)	265, 513
BmsI	GCATC	4 cut(s)	278, 342, 409, 795
BpiI	GAAGAC	1 cut(s)	417
Bpu10I	CCTNAGC	1 cut(s)	53
BpuEI	CTTGAG	1 cut(s)	347
Bsa29I	ATCGAT	1 cut(s)	626
BsaAI	YACGTR	1 cut(s)	233
BsaHI	GRCGYC	1 cut(s)	801
BsaXI	ACNNNNNCTCC	2 cut(s)	222, 252
Bsc4I	CCNNNNNNNGG	2 cut(s)	260, 782
Bse1I	ACTGG	3 cut(s)	105, 188, 484
BseCI	ATCGAT	1 cut(s)	626
BseGI	GGATG	2 cut(s)	163, 226
BseLI	CCNNNNNNNGG	2 cut(s)	260, 782
BseMII	CTCAG	4 cut(s)	44, 311, 498, 663
BseNI	ACTGG	3 cut(s)	105, 188, 484
BseSI	GKGCMC	1 cut(s)	238
BseXI	GCAGC	3 cut(s)	412, 434, 501
BsgI	GTGCAG	2 cut(s)	114, 141
BshFI	GGCC	2 cut(s)	33, 434
BshVI	ATCGAT	1 cut(s)	626
BsiHKAI	GWGCWC	1 cut(s)	238
BslFI	GGGAC	1 cut(s)	497
BslI	CCNNNNNNNGG	2 cut(s)	260, 782
BsmAI	GTCTC	1 cut(s)	47
BsmFI	GGGAC	1 cut(s)	497
BsnI	GGCC	2 cut(s)	33, 434
Bsp1286I	GDGCHC	1 cut(s)	238
Bsp143I	GATC	5 cut(s)	160, 442, 623, 627, 634
BspACI	CCGC	2 cut(s)	780, 783
BspANI	GGCC	2 cut(s)	33, 434
BspCNI	CTCAG	4 cut(s)	45, 312, 499, 664
BspDI	ATCGAT	1 cut(s)	626
BspHI	TCATGA	1 cut(s)	406
BspLI	GGNNCC	2 cut(s)	265, 513
BspMAI	CTGCAG	2 cut(s)	259, 430
BspMI	ACCTGC	2 cut(s)	262, 282
BsrI	ACTGG	3 cut(s)	105, 188, 484
BssMI	GATC	5 cut(s)	160, 442, 623, 627, 634
BssNI	GRCGYC	1 cut(s)	801
BssSI	CACGAG	1 cut(s)	44
Bst2BI	CACGAG	1 cut(s)	44
Bst4CI	ACNGT	2 cut(s)	349, 390
Bst6I	CTCTTC	1 cut(s)	765
BstACI	GRCGYC	1 cut(s)	801
BstBAI	YACGTR	1 cut(s)	233
BstC8I	GCNNGC	1 cut(s)	487
BstDEI	CTNAG	6 cut(s)	53, 149, 320, 449, 507, 672
BstF5I	GGATG	2 cut(s)	163, 226
BstHHI	GCGC	1 cut(s)	369
BstKTI	GATC	5 cut(s)	163, 445, 626, 630, 637
BstMAI	GTCTC	1 cut(s)	47
BstMBI	GATC	5 cut(s)	160, 442, 623, 627, 634
BstMWI	GCNNNNNNNGC	3 cut(s)	263, 431, 792
BstSFI	CTRYAG	2 cut(s)	255, 426
BstSLI	GKGCMC	1 cut(s)	238
BstV1I	GCAGC	3 cut(s)	412, 434, 501
BstV2I	GAAGAC	1 cut(s)	417
BstX2I	RGATCY	1 cut(s)	634
BstYI	RGATCY	1 cut(s)	634
Bsu15I	ATCGAT	1 cut(s)	626
BsuRI	GGCC	2 cut(s)	33, 434
BsuTUI	ATCGAT	1 cut(s)	626
BtsCI	GGATG	2 cut(s)	163, 226
BtsIMutI	CAGTG	2 cut(s)	73, 354
BveI	ACCTGC	2 cut(s)	262, 282
Cac8I	GCNNGC	1 cut(s)	487
CciI	TCATGA	1 cut(s)	406
CfoI	GCGC	1 cut(s)	369
Cfr13I	GGNCC	2 cut(s)	433, 511
ClaI	ATCGAT	1 cut(s)	626
Csp6I	GTAC	1 cut(s)	251
CviAII	CATG	3 cut(s)	242, 407, 495
CviQI	GTAC	1 cut(s)	251
DdeI	CTNAG	6 cut(s)	53, 149, 320, 449, 507, 672
DpnI	GATC	5 cut(s)	162, 444, 625, 629, 636
DpnII	GATC	5 cut(s)	160, 442, 623, 627, 634
Eam1104I	CTCTTC	1 cut(s)	765
EarI	CTCTTC	1 cut(s)	765
Eco47I	GGWCC	1 cut(s)	511
EcoO109I	RGGNCCY	2 cut(s)	433, 511
FaeI	CATG	3 cut(s)	245, 410, 498
FaiI	YATR	7 cut(s)	60, 175, 243, 306, 408, 416, 496
FaqI	GGGAC	1 cut(s)	497
FatI	CATG	3 cut(s)	241, 406, 494
Fnu4HI	GCNGC	5 cut(s)	423, 426, 490, 781, 784
FokI	GGATG	2 cut(s)	170, 233
Fsp4HI	GCNGC	5 cut(s)	423, 426, 490, 781, 784
FspBI	CTAG	5 cut(s)	29, 216, 299, 383, 456
GlaI	GCGC	1 cut(s)	368
GluI	GCNGC	5 cut(s)	423, 426, 490, 781, 784
HaeIII	GGCC	2 cut(s)	33, 434
HhaI	GCGC	1 cut(s)	369
Hin1I	GRCGYC	1 cut(s)	801
Hin1II	CATG	3 cut(s)	245, 410, 498
Hin6I	GCGC	1 cut(s)	367
HinP1I	GCGC	1 cut(s)	367
HindIII	AAGCTT	1 cut(s)	605
HinfI	GANTC	4 cut(s)	25, 545, 729, 757
HphI	GGTGA	1 cut(s)	590
Hpy166II	GTNNAC	1 cut(s)	236
Hpy188I	TCNGA	2 cut(s)	321, 508
Hpy188III	TCNNGA	7 cut(s)	52, 407, 475, 569, 703, 726, 733
Hpy8I	GTNNAC	1 cut(s)	236
Hpy99I	CGWCG	1 cut(s)	794
HpyAV	CCTTC	3 cut(s)	98, 368, 782
HpyCH4III	ACNGT	2 cut(s)	349, 390
HpyCH4IV	ACGT	3 cut(s)	232, 738, 801
HpyF10VI	GCNNNNNNNGC	3 cut(s)	263, 431, 792
HpyF3I	CTNAG	6 cut(s)	53, 149, 320, 449, 507, 672
HpySE526I	ACGT	3 cut(s)	232, 738, 801
Hsp92I	GRCGYC	1 cut(s)	801
Hsp92II	CATG	3 cut(s)	245, 410, 498
HspAI	GCGC	1 cut(s)	367
Kzo9I	GATC	5 cut(s)	160, 442, 623, 627, 634
LmnI	GCTCC	2 cut(s)	263, 360
Lsp1109I	GCAGC	3 cut(s)	412, 434, 501
LweI	GCATC	4 cut(s)	278, 342, 409, 795
MaeI	CTAG	5 cut(s)	29, 216, 299, 383, 456
MaeII	ACGT	3 cut(s)	232, 738, 801
MaeIII	GTNAC	5 cut(s)	70, 211, 294, 557, 739
MalI	GATC	5 cut(s)	162, 444, 625, 629, 636
MboI	GATC	5 cut(s)	160, 442, 623, 627, 634
MboII	GAAGA	6 cut(s)	28, 31, 34, 422, 437, 752
MfeI	CAATTG	1 cut(s)	516
MflI	RGATCY	1 cut(s)	634
MhlI	GDGCHC	1 cut(s)	238
MluCI	AATT	3 cut(s)	331, 516, 528
MlyI	GAGTC	2 cut(s)	539, 751
MmeI	TCCRAC	1 cut(s)	241
MnlI	CCTC	7 cut(s)	277, 290, 315, 424, 502, 572, 574
MseI	TTAA	3 cut(s)	114, 207, 392
MslI	CAYNNNNRTG	1 cut(s)	68
MspA1I	CMGCKG	1 cut(s)	425
MunI	CAATTG	1 cut(s)	516
MwoI	GCNNNNNNNGC	3 cut(s)	263, 431, 792
NdeII	GATC	5 cut(s)	160, 442, 623, 627, 634
NlaIII	CATG	3 cut(s)	245, 410, 498
NlaIV	GGNNCC	2 cut(s)	265, 513
NmuCI	GTSAC	3 cut(s)	70, 557, 739
PagI	TCATGA	1 cut(s)	406
PcsI	WCGNNNNNNNCGW	1 cut(s)	798
PfeI	GAWTC	2 cut(s)	25, 729
PkrI	GCNGC	5 cut(s)	424, 427, 491, 782, 785
PleI	GAGTC	2 cut(s)	539, 751
PpsI	GAGTC	2 cut(s)	539, 751
Ppu21I	YACGTR	1 cut(s)	233
PpuMI	RGGWCCY	1 cut(s)	511
Psp5II	RGGWCCY	1 cut(s)	511
PspN4I	GGNNCC	2 cut(s)	265, 513
PspPI	GGNCC	2 cut(s)	433, 511
PspPPI	RGGWCCY	1 cut(s)	511
PstI	CTGCAG	2 cut(s)	259, 430
PsuI	RGATCY	1 cut(s)	634
PvuII	CAGCTG	1 cut(s)	425
RsaI	GTAC	1 cut(s)	252
RsaNI	GTAC	1 cut(s)	251
RseI	CAYNNNNRTG	1 cut(s)	68
SaqAI	TTAA	3 cut(s)	114, 207, 392
SatI	GCNGC	5 cut(s)	423, 426, 490, 781, 784
Sau3AI	GATC	5 cut(s)	160, 442, 623, 627, 634
Sau96I	GGNCC	2 cut(s)	433, 511
SchI	GAGTC	2 cut(s)	539, 751
SduI	GDGCHC	1 cut(s)	238
SfaNI	GCATC	4 cut(s)	278, 342, 409, 795
SfcI	CTRYAG	2 cut(s)	255, 426
SinI	GGWCC	1 cut(s)	511
SmiMI	CAYNNNNRTG	1 cut(s)	68
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
Sse9I	AATT	3 cut(s)	331, 516, 528
SsiI	CCGC	2 cut(s)	780, 783
SspMI	CTAG	5 cut(s)	29, 216, 299, 383, 456
TaaI	ACNGT	2 cut(s)	349, 390
TaiI	ACGT	3 cut(s)	235, 741, 804
TaqI	TCGA	2 cut(s)	282, 626
TasI	AATT	3 cut(s)	331, 516, 528
TauI	GCSGC	2 cut(s)	783, 786
TfiI	GAWTC	2 cut(s)	25, 729
Tru1I	TTAA	3 cut(s)	114, 207, 392
Tru9I	TTAA	3 cut(s)	114, 207, 392
TscAI	CASTG	2 cut(s)	73, 354
TseFI	GTSAC	3 cut(s)	70, 557, 739
TseI	GCWGC	3 cut(s)	422, 425, 489
Tsp45I	GTSAC	3 cut(s)	70, 557, 739
TspDTI	ATGAA	3 cut(s)	17, 210, 423
TspRI	CASTG	2 cut(s)	73, 354
VneI	GTGCAC	1 cut(s)	234
VpaK11BI	GGWCC	1 cut(s)	511
XapI	RAATTY	2 cut(s)	331, 528
XcmI	CCANNNNNNNNNTGG	1 cut(s)	476
XspI	CTAG	5 cut(s)	29, 216, 299, 383, 456
ZraI	GACGTC	1 cut(s)	802

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.