Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018425

Physical Location & Seq

Genomic Coordinates Forward (+)

45358266 .. 45359679

Gene Structure 1414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38969

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGAAATCAGTGCTATTTGTAAGGCCCAAAGTCTTTCTTACTCAATATCAAGATTCATTATGCATGAGTAGATCAATGGTGCATCAATTTCTTGCTCATGGAGACAAAATTGACCCTACTCCCCCCCTCCTCTTCCTCTGCCCCTCTTCTCCTGTACATAGATTTGTTGTGGAGGGGTACCATGGTATTGAAGAGGATAAACTAGAGATGGCACAGGAGTTCATGATAGTATTGCAAACCAAACTGGAAGGTGTTGTTAAAAGTGCAGTATCATTTGCTTTGAATAGACAACTAAGTTTGGATGATCTTACCAAGCCATATCTTACCAAACCAGTAGATGAAGCGAGTATTAAGGTTACTAGGGATGATTTTCTACATGCACTCCATGATATTGTACCTGCAGTTGGAGCCTCCGCTGATGACCTTGAAAGATGCAGACTTCATGGCATGGTGTATTATGGGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0005911 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04138 ko04721 ko04727 ko04962 map04138 map04721 map04727 map04962

Pfam Domains

Protein Families

AAA CDC48_2 CDC48_N

Protein Analysis

155

Amino Acids

17.51

Weight (kDa)

5.76

Isoelectric Point (pI)

32.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018425)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26662
rosa_chinensis	RchiOBHm_Chr4g0419801 RchiOBHm_Chr4g0419851 RchiOBHm_Chr4g0419861
rosa_laevigata	RLG00000031520
rosa_roxburghii	Rroxscaffold_5G00362610
rosa_samantha	Rh4CG235200 Rh4CG235300 Rh5AG060100 Rh5CG066600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	406
Acc65I	GGTACC	1 cut(s)	177
AccB1I	GGYRCC	1 cut(s)	177
AciI	CCGC	1 cut(s)	414
AfaI	GTAC	3 cut(s)	156, 179, 396
AfiI	CCNNNNNNNGG	1 cut(s)	404
AgsI	TTSAA	3 cut(s)	191, 283, 428
Alw26I	GTCTC	1 cut(s)	96
AoxI	GGCC	1 cut(s)	23
Asp718I	GGTACC	1 cut(s)	177
AspS9I	GGNCC	1 cut(s)	24
BaeI	ACNNNNGTAYC	2 cut(s)	169, 202
BanI	GGYRCC	1 cut(s)	177
BccI	CCATC	1 cut(s)	202
BcoDI	GTCTC	1 cut(s)	96
BfaI	CTAG	2 cut(s)	203, 360
BfmI	CTRYAG	1 cut(s)	399
BfuAI	ACCTGC	1 cut(s)	406
BmgT120I	GGNCC	1 cut(s)	24
BmiI	GGNNCC	2 cut(s)	179, 409
BmsI	GCATC	2 cut(s)	91, 422
BsaJI	CCNNGG	1 cut(s)	181
BsaXI	ACNNNNNCTCC	2 cut(s)	366, 396
Bsc4I	CCNNNNNNNGG	1 cut(s)	404
Bse1I	ACTGG	2 cut(s)	249, 332
BseDI	CCNNGG	1 cut(s)	181
BseGI	GGATG	2 cut(s)	307, 370
BseLI	CCNNNNNNNGG	1 cut(s)	404
BseNI	ACTGG	2 cut(s)	249, 332
BseRI	GAGGAG	1 cut(s)	119
BsgI	GTGCAG	1 cut(s)	285
BshFI	GGCC	1 cut(s)	25
BshNI	GGYRCC	1 cut(s)	177
BslI	CCNNNNNNNGG	1 cut(s)	404
BsmAI	GTCTC	1 cut(s)	96
BsnI	GGCC	1 cut(s)	25
Bsp1407I	TGTACA	1 cut(s)	154
Bsp143I	GATC	2 cut(s)	71, 304
Bsp19I	CCATGG	1 cut(s)	181
BspACI	CCGC	1 cut(s)	414
BspANI	GGCC	1 cut(s)	25
BspHI	TCATGA	1 cut(s)	222
BspLI	GGNNCC	2 cut(s)	179, 409
BspMAI	CTGCAG	1 cut(s)	403
BspMI	ACCTGC	1 cut(s)	406
BspT107I	GGYRCC	1 cut(s)	177
BsrGI	TGTACA	1 cut(s)	154
BsrI	ACTGG	2 cut(s)	249, 332
BssECI	CCNNGG	1 cut(s)	181
BssMI	GATC	2 cut(s)	71, 304
BssT1I	CCWWGG	1 cut(s)	181
Bst6I	CTCTTC	3 cut(s)	137, 151, 186
BstAUI	TGTACA	1 cut(s)	154
BstDEI	CTNAG	1 cut(s)	293
BstDSI	CCRYGG	1 cut(s)	181
BstF5I	GGATG	2 cut(s)	307, 370
BstKTI	GATC	2 cut(s)	74, 307
BstMAI	GTCTC	1 cut(s)	96
BstMBI	GATC	2 cut(s)	71, 304
BstMWI	GCNNNNNNNGC	1 cut(s)	407
BstNSI	RCATGY	1 cut(s)	380
BstSFI	CTRYAG	1 cut(s)	399
BsuRI	GGCC	1 cut(s)	25
BtgI	CCRYGG	1 cut(s)	181
BtsCI	GGATG	2 cut(s)	307, 370
BtsIMutI	CAGTG	1 cut(s)	15
BveI	ACCTGC	1 cut(s)	406
CciI	TCATGA	1 cut(s)	222
Cfr13I	GGNCC	1 cut(s)	24
Csp6I	GTAC	3 cut(s)	155, 178, 395
CviAII	CATG	8 cut(s)	64, 98, 182, 223, 377, 386, 443, 448
CviJI	RGCY	3 cut(s)	25, 316, 410
CviKI_1	RGCY	3 cut(s)	25, 316, 410
CviQI	GTAC	3 cut(s)	155, 178, 395
DdeI	CTNAG	1 cut(s)	293
DpnI	GATC	2 cut(s)	73, 306
DpnII	GATC	2 cut(s)	71, 304
Eam1104I	CTCTTC	3 cut(s)	137, 151, 186
EarI	CTCTTC	3 cut(s)	137, 151, 186
Eco130I	CCWWGG	1 cut(s)	181
EcoT14I	CCWWGG	1 cut(s)	181
EcoT22I	ATGCAT	1 cut(s)	65
ErhI	CCWWGG	1 cut(s)	181
FaeI	CATG	8 cut(s)	67, 101, 185, 226, 380, 389, 446, 451
FalI	AAGNNNNNCTT	2 cut(s)	21, 53
FatI	CATG	8 cut(s)	63, 97, 181, 222, 376, 385, 442, 447
FokI	GGATG	2 cut(s)	314, 377
FspBI	CTAG	2 cut(s)	203, 360
HaeIII	GGCC	1 cut(s)	25
Hin1II	CATG	8 cut(s)	67, 101, 185, 226, 380, 389, 446, 451
HinfI	GANTC	1 cut(s)	53
Hpy188III	TCNNGA	2 cut(s)	50, 223
HpyAV	CCTTC	1 cut(s)	242
HpyCH4V	TGCA	7 cut(s)	63, 82, 235, 266, 380, 401, 435
HpyF10VI	GCNNNNNNNGC	1 cut(s)	407
HpyF3I	CTNAG	1 cut(s)	293
Hsp92II	CATG	8 cut(s)	67, 101, 185, 226, 380, 389, 446, 451
KpnI	GGTACC	1 cut(s)	181
Kzo9I	GATC	2 cut(s)	71, 304
LmnI	GCTCC	1 cut(s)	407
LpnPI	CCDG	5 cut(s)	165, 200, 230, 345, 411
LweI	GCATC	2 cut(s)	91, 422
MaeI	CTAG	2 cut(s)	203, 360
MaeIII	GTNAC	1 cut(s)	355
MalI	GATC	2 cut(s)	73, 306
MboI	GATC	2 cut(s)	71, 304
MboII	GAAGA	3 cut(s)	124, 138, 203
MluCI	AATT	2 cut(s)	86, 108
MmeI	TCCRAC	1 cut(s)	385
MnlI	CCTC	7 cut(s)	137, 140, 146, 154, 166, 187, 421
Mph1103I	ATGCAT	1 cut(s)	65
MseI	TTAA	2 cut(s)	258, 351
MspA1I	CMGCKG	1 cut(s)	416
MwoI	GCNNNNNNNGC	1 cut(s)	407
NcoI	CCATGG	1 cut(s)	181
NdeII	GATC	2 cut(s)	71, 304
NlaIII	CATG	8 cut(s)	67, 101, 185, 226, 380, 389, 446, 451
NlaIV	GGNNCC	2 cut(s)	179, 409
NsiI	ATGCAT	1 cut(s)	65
NspI	RCATGY	1 cut(s)	380
PagI	TCATGA	1 cut(s)	222
PfeI	GAWTC	1 cut(s)	53
PspN4I	GGNNCC	2 cut(s)	179, 409
PspPI	GGNCC	1 cut(s)	24
PstI	CTGCAG	1 cut(s)	403
RsaI	GTAC	3 cut(s)	156, 179, 396
RsaNI	GTAC	3 cut(s)	155, 178, 395
SaqAI	TTAA	2 cut(s)	258, 351
Sau3AI	GATC	2 cut(s)	71, 304
Sau96I	GGNCC	1 cut(s)	24
SetI	ASST	4 cut(s)	253, 357, 400, 426
SfaNI	GCATC	2 cut(s)	91, 422
SfcI	CTRYAG	1 cut(s)	399
Sse9I	AATT	2 cut(s)	86, 108
SsiI	CCGC	1 cut(s)	414
SspMI	CTAG	2 cut(s)	203, 360
StyI	CCWWGG	1 cut(s)	181
TasI	AATT	2 cut(s)	86, 108
TatI	WGTACW	1 cut(s)	154
TfiI	GAWTC	1 cut(s)	53
Tru1I	TTAA	2 cut(s)	258, 351
Tru9I	TTAA	2 cut(s)	258, 351
TscAI	CASTG	1 cut(s)	15
TspDTI	ATGAA	5 cut(s)	17, 45, 211, 354, 431
TspRI	CASTG	1 cut(s)	15
XceI	RCATGY	1 cut(s)	380
XspI	CTAG	2 cut(s)	203, 360
Zsp2I	ATGCAT	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.