FvH4_4g27691

Aluminum-activated malate transporter

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
28566086 .. 28568644
2559 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g27691.t1

Sequence Viewer

Length: 1530 bp
ATGGCGGCCAAAATAGGGTCTTTCCGGCACAGCTTTGCTGAGAGGAGCAAGGAGAGGCTTCTCTCCCGTAAAGGGTACTCGGATTTTGGCATCAACAACTCCCAATGCAGCGAGGAGGAGATTGTCAAATGTGGCTGGTTTGGTAGAATGTCCGAGGGTTTCGTCAACTTTTGCAACAACGTTCCACAAGTTTCAGTTAAATTATATAAAATGGGCAGCTCAGATCCTCGGAAAGCTTACTTCGCTGGCAAGATGGGGTTGTCGCTGGCGATTGTTTCGCTGCTCATATTTTTCAAGGAGCCTCTCAAAGGTGCTAGCCAATATTCCATCTGGGCGATTCTTACTGTAGTCCTCGTTTTCGAATTCAGTATAGGTGCGACGTTGAGCAAAGGGCTTAATCGTGCAATGGGAACGATATCGGCTGGAGGGCTAGCTCTAGGCATAGCAGAGTTGGCTGTAATGGCCGGGAGATGGAAGGAGGTTGTGATTGTAGGAAATATTTTCATAGCAGGGGAGGATCTCCATAAGTTGGTGGCGAAAAATTTCAAGGGTGTTGCAACTTCTTTAGAAGGTGTTGTTAATGGATATCTACAATGTGTTGAGTATGAGAGGGTTCCTTCAAAAATTCTCACATACCAAGCTTCTGATGAACCAATGTATAGTGGATATAGAACCACTATACAGTCTATAACCCAAGAGGAAACCCTGTTAGACTTTGCGCTATGGGAGCCACCGCATGGCCCTTATAAGACGTTCCATTATCCTTGGAAAAGCTATGTTCGAGTTGGTGGTTCTCTTAGGCACTGTGCTTTCATGGTCATGGCAATGCACGGATGCATTCTTTCTGAAATACAGGCACCACCAGAGAAGAGACATGTTTTTGCGAATGAGCTTCTGAGGGTTGGTACCGAAGGTGCTAAGGTATTACGCGAGCTAGGAAGCAAAGTAGAAAGGATGGAAAAATTAAGTCCCAAAGATGTACTTTTTGATGTGCATGAAGCAGCAGAAGACTTGCAGCATATGATAGACCAGAAATCATACCTTCTTGTCAATTATGAAGGTTGGGGACCCAAAATACTAGGGCGCAAAATTGAAGATACTGACAATATTGTTGAGAAGGAGCAGGATAATAAGAACAATGTGATCGAGTCCCTTGGTGAATCCTGGGATGCAGATCAGAATACTGGAAATGGTGGCGGTGGCGGCAATCCCTCAATGTCACGTTTGATATCTACAAATAGTGTGTTAAAGAAAACATTGGCATCATGGCCTTCACGGCTTGCATCGTTTAATTATGGGAATATGATGCACCCTCAACTTGAACTAGAAGAATCAAAAGTATATGAAAGCGCCAGCTCCTTATCCTTAGCAACATTTACATCTCTTCTAATTGAGTTTGTGGCAAGGCTTCAAAATTTAGTGGATGAATTTGTAGAGCTTAGCGAGAAAGCAAACTTTAAGGATCCTATGGACTCATCGGATACCAAAGAGGTAGACGGGTTCCGGTCCAAGCATGAAGAGTTAGCTTGA

Protein Analysis

510

Amino Acids

56.62

Weight (kDa)

5.97

Isoelectric Point (pI)

40.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ALMT PF11744 70 - 171 1.5e-41 Aluminium activated malate transporter
ALMT PF11744 170 - 481 9e-89 Aluminium activated malate transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 747
Acc65I GGTACC 1 cut(s) 905
AccB1I GGYRCC 2 cut(s) 856, 905
AccB7I CCANNNNNTGG 2 cut(s) 529, 737
AccI GTMKAC 1 cut(s) 1494
AccII CGCG 1 cut(s) 930
AciI CCGC 4 cut(s) 5, 734, 1197, 1203
AclI AACGTT 1 cut(s) 180
AclWI GGATC 4 cut(s) 218, 525, 1457, 1470
AcoI YGGCCR 2 cut(s) 6, 462
AcsI RAATTY 5 cut(s) 362, 541, 624, 1414, 1427
AfaI GTAC 3 cut(s) 77, 907, 981
AfiI CCNNNNNNNGG 6 cut(s) 15, 72, 308, 471, 529, 737
AflIII ACRYGT 1 cut(s) 874
AgsI TTSAA 6 cut(s) 295, 547, 621, 1094, 1322, 1412
AjnI CCWGG 1 cut(s) 1163
Alw26I GTCTC 1 cut(s) 865
AlwI GGATC 4 cut(s) 218, 525, 1457, 1470
AoxI GGCC 4 cut(s) 6, 462, 739, 1268
ApeKI GCWGC 5 cut(s) 108, 216, 280, 1001, 1015
ApoI RAATTY 5 cut(s) 362, 541, 624, 1414, 1427
Asp700I GAANNNNTTC 1 cut(s) 542
Asp718I GGTACC 1 cut(s) 905
AspLEI GCGC 3 cut(s) 721, 1086, 1352
AspS9I GGNCC 3 cut(s) 740, 1067, 1506
AsuC2I CCSGG 1 cut(s) 466
AsuHPI GGTGA 1 cut(s) 1169
AsuII TTCGAA 1 cut(s) 360
AsuNHI GCTAGC 2 cut(s) 314, 430
AvaII GGWCC 2 cut(s) 1067, 1506
BamHI GGATCC 1 cut(s) 1462
BanI GGYRCC 2 cut(s) 856, 905
BbsI GAAGAC 1 cut(s) 1014
BbvI GCAGC 5 cut(s) 120, 228, 267, 1013, 1027
BccI CCATC 4 cut(s) 247, 335, 465, 949
BceAI ACGGC 1 cut(s) 1292
BciT130I CCWGG 1 cut(s) 1165
BciVI GTATCC 1 cut(s) 1474
BcnI CCSGG 1 cut(s) 466
BcoDI GTCTC 1 cut(s) 865
BfaI CTAG 6 cut(s) 315, 431, 437, 935, 1079, 1325
BfmI CTRYAG 1 cut(s) 345
BfoI RGCGCY 1 cut(s) 1353
BfuI GTATCC 1 cut(s) 1474
BglI GCCNNNNNGGC 1 cut(s) 1276
BisI GCNGC 7 cut(s) 6, 109, 217, 281, 1002, 1016, 1204
BlpI GCTNAGC 1 cut(s) 1439
BlsI GCNGC 7 cut(s) 7, 110, 218, 282, 1003, 1017, 1205
Bme1390I CCNGG 2 cut(s) 466, 1165
Bme18I GGWCC 2 cut(s) 1067, 1506
BmgT120I GGNCC 3 cut(s) 740, 1067, 1506
BmiI GGNNCC 9 cut(s) 300, 615, 729, 858, 907, 1068, 1069, 1464, 1502
BmrFI CCNGG 2 cut(s) 466, 1165
BmsI GCATC 6 cut(s) 99, 824, 1159, 1271, 1292, 1296
BmtI GCTAGC 2 cut(s) 318, 434
BpiI GAAGAC 1 cut(s) 1014
BpmI CTGGAG 1 cut(s) 444
Bpu10I CCTNAGC 2 cut(s) 918, 1366
Bpu1102I GCTNAGC 1 cut(s) 1439
Bpu14I TTCGAA 1 cut(s) 360
BpuMI CCSGG 1 cut(s) 466
BsaBI GATNNNNATC 1 cut(s) 1173
BsaJI CCNNGG 5 cut(s) 153, 227, 764, 1153, 1164
BsaWI WCCGGW 1 cut(s) 1503
Bsc4I CCNNNNNNNGG 6 cut(s) 15, 72, 308, 471, 529, 737
Bse1I ACTGG 1 cut(s) 1189
Bse3DI GCAATG 2 cut(s) 411, 831
Bse8I GATNNNNATC 1 cut(s) 1173
BseBI CCWGG 1 cut(s) 1165
BseDI CCNNGG 5 cut(s) 153, 227, 764, 1153, 1164
BseGI GGATG 4 cut(s) 839, 960, 1174, 1429
BseJI GATNNNNATC 1 cut(s) 1173
BseLI CCNNNNNNNGG 6 cut(s) 15, 72, 308, 471, 529, 737
BseMI GCAATG 2 cut(s) 411, 831
BseMII CTCAG 3 cut(s) 30, 234, 887
BseNI ACTGG 1 cut(s) 1189
BseRI GAGGAG 3 cut(s) 58, 128, 131
BseXI GCAGC 5 cut(s) 120, 228, 267, 1013, 1027
Bsh1236I CGCG 1 cut(s) 930
BshFI GGCC 4 cut(s) 8, 464, 741, 1270
BshNI GGYRCC 2 cut(s) 856, 905
BsiSI CCGG 3 cut(s) 25, 465, 1504
BslFI GGGAC 3 cut(s) 954, 1080, 1135
BslI CCNNNNNNNGG 6 cut(s) 15, 72, 308, 471, 529, 737
BsmAI GTCTC 1 cut(s) 865
BsmFI GGGAC 3 cut(s) 954, 1080, 1135
BsmI GAATGC 1 cut(s) 837
BsnI GGCC 4 cut(s) 8, 464, 741, 1270
Bsp119I TTCGAA 1 cut(s) 360
Bsp143I GATC 5 cut(s) 223, 517, 1143, 1174, 1462
Bsp1720I GCTNAGC 1 cut(s) 1439
BspACI CCGC 4 cut(s) 5, 734, 1197, 1203
BspANI GGCC 4 cut(s) 8, 464, 741, 1270
BspCNI CTCAG 3 cut(s) 31, 233, 888
BspFNI CGCG 1 cut(s) 930
BspLI GGNNCC 9 cut(s) 300, 615, 729, 858, 907, 1068, 1069, 1464, 1502
BspOI GCTAGC 2 cut(s) 318, 434
BspPI GGATC 4 cut(s) 218, 525, 1457, 1470
BspT104I TTCGAA 1 cut(s) 360
BspT107I GGYRCC 2 cut(s) 856, 905
BsrDI GCAATG 2 cut(s) 411, 831
BsrI ACTGG 1 cut(s) 1189
BssECI CCNNGG 5 cut(s) 153, 227, 764, 1153, 1164
BssMI GATC 5 cut(s) 223, 517, 1143, 1174, 1462
BssT1I CCWWGG 2 cut(s) 764, 1153
Bst2UI CCWGG 1 cut(s) 1165
Bst4CI ACNGT 3 cut(s) 346, 684, 806
Bst6I CTCTTC 3 cut(s) 863, 1389, 1512
BstBI TTCGAA 1 cut(s) 360
BstC8I GCNNGC 7 cut(s) 247, 267, 316, 432, 932, 1281, 1354
BstDEI CTNAG 7 cut(s) 39, 220, 797, 896, 918, 1366, 1439
BstENI CCTNNNNNAGG 1 cut(s) 306
BstF5I GGATG 4 cut(s) 839, 960, 1174, 1429
BstFNI CGCG 1 cut(s) 930
BstH2I RGCGCY 1 cut(s) 1353
BstHHI GCGC 3 cut(s) 721, 1086, 1352
BstKTI GATC 5 cut(s) 226, 520, 1146, 1177, 1465
BstMAI GTCTC 1 cut(s) 865
BstMBI GATC 5 cut(s) 223, 517, 1143, 1174, 1462
BstMWI GCNNNNNNNGC 6 cut(s) 242, 452, 461, 727, 1203, 1276
BstNI CCWGG 1 cut(s) 1165
BstNSI RCATGY 1 cut(s) 878
BstSCI CCNGG 2 cut(s) 464, 1163
BstSFI CTRYAG 1 cut(s) 345
BstUI CGCG 1 cut(s) 930
BstV1I GCAGC 5 cut(s) 120, 228, 267, 1013, 1027
BstV2I GAAGAC 1 cut(s) 1014
BstX2I RGATCY 3 cut(s) 223, 517, 1462
BstYI RGATCY 3 cut(s) 223, 517, 1462
BsuI GTATCC 1 cut(s) 1474
BsuRI GGCC 4 cut(s) 8, 464, 741, 1270
BtsCI GGATG 4 cut(s) 839, 960, 1174, 1429
BtsIMutI CAGTG 1 cut(s) 802
Cac8I GCNNGC 7 cut(s) 247, 267, 316, 432, 932, 1281, 1354
CfoI GCGC 3 cut(s) 721, 1086, 1352
Cfr13I GGNCC 3 cut(s) 740, 1067, 1506
Csp6I GTAC 3 cut(s) 76, 906, 980
CviAII CATG 7 cut(s) 737, 814, 820, 875, 995, 1266, 1514
CviQI GTAC 3 cut(s) 76, 906, 980
DdeI CTNAG 7 cut(s) 39, 220, 797, 896, 918, 1366, 1439
DpnI GATC 5 cut(s) 225, 519, 1145, 1176, 1464
DpnII GATC 5 cut(s) 223, 517, 1143, 1174, 1462
EaeI YGGCCR 2 cut(s) 6, 462
Eam1104I CTCTTC 3 cut(s) 863, 1389, 1512
EarI CTCTTC 3 cut(s) 863, 1389, 1512
Eco130I CCWWGG 2 cut(s) 764, 1153
Eco32I GATATC 3 cut(s) 417, 587, 1230
Eco47I GGWCC 2 cut(s) 1067, 1506
EcoNI CCTNNNNNAGG 1 cut(s) 306
EcoO109I RGGNCCY 1 cut(s) 1067
EcoRI GAATTC 1 cut(s) 362
EcoRII CCWGG 1 cut(s) 1163
EcoRV GATATC 3 cut(s) 417, 587, 1230
EcoT14I CCWWGG 2 cut(s) 764, 1153
EcoT22I ATGCAT 1 cut(s) 839
ErhI CCWWGG 2 cut(s) 764, 1153
FaeI CATG 7 cut(s) 740, 817, 823, 878, 998, 1269, 1517
FalI AAGNNNNNCTT 2 cut(s) 966, 998
FaqI GGGAC 3 cut(s) 954, 1080, 1135
FatI CATG 7 cut(s) 736, 813, 819, 874, 994, 1265, 1513
FauNDI CATATG 1 cut(s) 1020
FblI GTMKAC 1 cut(s) 1494
Fnu4HI GCNGC 7 cut(s) 6, 109, 217, 281, 1002, 1016, 1204
FokI GGATG 4 cut(s) 846, 967, 1181, 1436
Fsp4HI GCNGC 7 cut(s) 6, 109, 217, 281, 1002, 1016, 1204
FspBI CTAG 6 cut(s) 315, 431, 437, 935, 1079, 1325
GlaI GCGC 3 cut(s) 720, 1085, 1351
GluI GCNGC 7 cut(s) 6, 109, 217, 281, 1002, 1016, 1204
GsuI CTGGAG 1 cut(s) 444
HaeII RGCGCY 1 cut(s) 1353
HaeIII GGCC 4 cut(s) 8, 464, 741, 1270
HapII CCGG 3 cut(s) 25, 465, 1504
HhaI GCGC 3 cut(s) 721, 1086, 1352
Hin1II CATG 7 cut(s) 740, 817, 823, 878, 998, 1269, 1517
Hin6I GCGC 3 cut(s) 719, 1084, 1350
HinP1I GCGC 3 cut(s) 719, 1084, 1350
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HindIII AAGCTT 2 cut(s) 234, 639
HinfI GANTC 5 cut(s) 337, 1148, 1160, 1331, 1472
HpaII CCGG 3 cut(s) 25, 465, 1504
HphI GGTGA 1 cut(s) 1169
Hpy166II GTNNAC 2 cut(s) 166, 1495
Hpy188I TCNGA 9 cut(s) 82, 154, 223, 231, 646, 847, 897, 1179, 1480
Hpy8I GTNNAC 2 cut(s) 166, 1495
Hpy99I CGWCG 1 cut(s) 382
HpyAV CCTTC 8 cut(s) 469, 563, 627, 905, 1052, 1052, 1111, 1281
HpyCH4III ACNGT 3 cut(s) 346, 684, 806
HpyCH4IV ACGT 4 cut(s) 180, 380, 752, 1222
HpyF10VI GCNNNNNNNGC 6 cut(s) 242, 452, 461, 727, 1203, 1276
HpyF3I CTNAG 7 cut(s) 39, 220, 797, 896, 918, 1366, 1439
HpySE526I ACGT 4 cut(s) 180, 380, 752, 1222
Hsp92II CATG 7 cut(s) 740, 817, 823, 878, 998, 1269, 1517
HspAI GCGC 3 cut(s) 719, 1084, 1350
KflI GGGWCCC 1 cut(s) 1067
KpnI GGTACC 1 cut(s) 909
Kzo9I GATC 5 cut(s) 223, 517, 1143, 1174, 1462
LmnI GCTCC 5 cut(s) 45, 298, 727, 1120, 1361
Lsp1109I GCAGC 5 cut(s) 120, 228, 267, 1013, 1027
LweI GCATC 6 cut(s) 99, 824, 1159, 1271, 1292, 1296
MaeI CTAG 6 cut(s) 315, 431, 437, 935, 1079, 1325
MaeII ACGT 4 cut(s) 180, 380, 752, 1222
MaeIII GTNAC 1 cut(s) 1218
MalI GATC 5 cut(s) 225, 519, 1145, 1176, 1464
MboI GATC 5 cut(s) 223, 517, 1143, 1174, 1462
MboII GAAGA 6 cut(s) 880, 1019, 1106, 1340, 1376, 1529
MflI RGATCY 3 cut(s) 223, 517, 1462
MlyI GAGTC 2 cut(s) 1157, 1466
Mph1103I ATGCAT 1 cut(s) 839
MroXI GAANNNNTTC 1 cut(s) 542
MseI TTAA 7 cut(s) 198, 396, 579, 965, 1247, 1290, 1458
MslI CAYNNNNRTG 2 cut(s) 818, 824
MspI CCGG 3 cut(s) 25, 465, 1504
MspR9I CCNGG 2 cut(s) 466, 1165
Mva1269I GAATGC 1 cut(s) 837
MvaI CCWGG 1 cut(s) 1165
MvnI CGCG 1 cut(s) 930
MwoI GCNNNNNNNGC 6 cut(s) 242, 452, 461, 727, 1203, 1276
NciI CCSGG 1 cut(s) 466
NdeI CATATG 1 cut(s) 1020
NdeII GATC 5 cut(s) 223, 517, 1143, 1174, 1462
NheI GCTAGC 2 cut(s) 314, 430
NlaIII CATG 7 cut(s) 740, 817, 823, 878, 998, 1269, 1517
NlaIV GGNNCC 9 cut(s) 300, 615, 729, 858, 907, 1068, 1069, 1464, 1502
NmuCI GTSAC 1 cut(s) 1218
NsiI ATGCAT 1 cut(s) 839
NspI RCATGY 1 cut(s) 878
NspV TTCGAA 1 cut(s) 360
PciI ACATGT 1 cut(s) 874
PctI GAATGC 1 cut(s) 837
PdmI GAANNNNTTC 1 cut(s) 542
PfeI GAWTC 3 cut(s) 337, 1160, 1331
PflMI CCANNNNNTGG 2 cut(s) 529, 737
PkrI GCNGC 7 cut(s) 7, 110, 218, 282, 1003, 1017, 1205
PleI GAGTC 2 cut(s) 1156, 1466
PpsI GAGTC 2 cut(s) 1156, 1466
PpuMI RGGWCCY 1 cut(s) 1067
PscI ACATGT 1 cut(s) 874
PsiI TTATAA 1 cut(s) 747
Psp1406I AACGTT 1 cut(s) 180
Psp5II RGGWCCY 1 cut(s) 1067
Psp6I CCWGG 1 cut(s) 1163
PspGI CCWGG 1 cut(s) 1163
PspN4I GGNNCC 9 cut(s) 300, 615, 729, 858, 907, 1068, 1069, 1464, 1502
PspPI GGNCC 3 cut(s) 740, 1067, 1506
PspPPI RGGWCCY 1 cut(s) 1067
PsuI RGATCY 3 cut(s) 223, 517, 1462
RsaI GTAC 3 cut(s) 77, 907, 981
RsaNI GTAC 3 cut(s) 76, 906, 980
RseI CAYNNNNRTG 2 cut(s) 818, 824
SaqAI TTAA 7 cut(s) 198, 396, 579, 965, 1247, 1290, 1458
SatI GCNGC 7 cut(s) 6, 109, 217, 281, 1002, 1016, 1204
Sau3AI GATC 5 cut(s) 223, 517, 1143, 1174, 1462
Sau96I GGNCC 3 cut(s) 740, 1067, 1506
SchI GAGTC 2 cut(s) 1157, 1466
ScrFI CCNGG 2 cut(s) 466, 1165
SfaNI GCATC 6 cut(s) 99, 824, 1159, 1271, 1292, 1296
SfcI CTRYAG 1 cut(s) 345
SfuI TTCGAA 1 cut(s) 360
SinI GGWCC 2 cut(s) 1067, 1506
SmiMI CAYNNNNRTG 2 cut(s) 818, 824
SsiI CCGC 4 cut(s) 5, 734, 1197, 1203
SspI AATATT 3 cut(s) 323, 499, 1108
SspMI CTAG 6 cut(s) 315, 431, 437, 935, 1079, 1325
StyD4I CCNGG 2 cut(s) 464, 1163
StyI CCWWGG 2 cut(s) 764, 1153
TaaI ACNGT 3 cut(s) 346, 684, 806
TaiI ACGT 4 cut(s) 183, 383, 755, 1225
TaqI TCGA 3 cut(s) 360, 781, 1146
TatI WGTACW 1 cut(s) 979
TauI GCSGC 2 cut(s) 8, 1206
TfiI GAWTC 3 cut(s) 337, 1160, 1331
Tru1I TTAA 7 cut(s) 198, 396, 579, 965, 1247, 1290, 1458
Tru9I TTAA 7 cut(s) 198, 396, 579, 965, 1247, 1290, 1458
TscAI CASTG 1 cut(s) 809
TseFI GTSAC 1 cut(s) 1218
TseI GCWGC 5 cut(s) 108, 216, 280, 1001, 1015
Tsp45I GTSAC 1 cut(s) 1218
TspDTI ATGAA 8 cut(s) 493, 663, 802, 1011, 1071, 1359, 1440, 1530
TspGWI ACGGA 1 cut(s) 846
TspRI CASTG 1 cut(s) 809
Van91I CCANNNNNTGG 2 cut(s) 529, 737
VpaK11BI GGWCC 2 cut(s) 1067, 1506
XagI CCTNNNNNAGG 1 cut(s) 306
XapI RAATTY 5 cut(s) 362, 541, 624, 1414, 1427
XceI RCATGY 1 cut(s) 878
XmiI GTMKAC 1 cut(s) 1494
XmnI GAANNNNTTC 1 cut(s) 542
XspI CTAG 6 cut(s) 315, 431, 437, 935, 1079, 1325
Zsp2I ATGCAT 1 cut(s) 839
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.