Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0007132

Physical Location & Seq

Genomic Coordinates Forward (+)

45978580 .. 45979569

Gene Structure 990 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0286200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGCGCCCTTAGTGGAGAGCTTCCACAGATTCGACGTCGTCTCGGACCATTCAGACCACCACTACAGCAACACTGACGGGAACGGAATCAGTTTCACCTACTGTGGAAGCACAGTGTACAAGAAGATCATGCGTGAGTGGAAAATTAATCTAAGAAAGCACCTCCCGGACTCGACCTATGTGCGAGTGTACAACACTCGAATCGACCTACTGAGAGCCGTCATTGTTGGAGCAGCCGGCACGCCCTACCACGACGGATTGTTCTTCTTCGACATCAAGTTCCCGTCCAACTACCCGTACCAACCGCCACAGGTCCATTACCATTCCCACGGATTGAGGCTCAACCCGAATCTGTATGAAAGCGGCAAGGTCTGTCTGAGCTTGCTCAATACGTGGTCCGGGAAAAAGAAAGAGATGTGGGATCCAAATCAGTCGACTATCCTCCAAGTGCTGGTGTCTATACAAGGACTTGTTCTGAACAAAAAACCCTTCTATAATGAACCCGTTCGTCTCCGTATCTTTCAGGAGGAGAACTCCCGTCGTTACAATGAGGACGCGTTTATCAAAACGTGCAAGACGACGTTGTATTTGCTCCAAAAACCGCCCAAGAATTTTGAGCTTTTCACCGACCATTTTCGACAGAGAGCAAACCGGATACTGAGAGCTTGTAACGCTTACACTAACAGTCGTGTGGGAGTCGGGTACTACATAGATGACAATGACAATATAACTAAGGATGACACTAAAGTTAAGGACTCTGCAATTTCAATTCACCCTGTTTCGACGACATTTATTGATTCGATGGAACAGTTGTACCCGAAACTCGTTGTGGTTTTTAGATGGAATAAGGCCTCAAATTTGGTCGAGCACTTGAATTTGGAGAACGTTACGACGCGGCGGGAGTCTGCAGGCATGCTTTGTCGTCCTTATTGTCTTCTTCTTTGTTGTGCATTAGTAGCACTGATTTGTTACTTCATGTTTAGGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005216 GO:0005253 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008509 GO:0008514 GO:0009705 GO:0009987 GO:0010118 GO:0015075 GO:0015103 GO:0015140 GO:0015267 GO:0015318 GO:0015556 GO:0015698 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071423 GO:0071702 GO:0090332 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALMT

Protein Analysis

329

Amino Acids

38.26

Weight (kDa)

9.07

Isoelectric Point (pI)

38.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	43 - 182	5e-25	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25480
fragaria_vesca	FvH4_4g27691 FvH4_4g27693 FvH4_4g27693 FvH4_4g27693 FvH4_4g27693 FvH4_4g27693 FvH4_4g27693
malus_domestica	MD13G1044400.v1.1
prunus_persica	Prupe.1G308100_v2.0.a1
pyrus_communis	pycom13g03900 pycom16g03980
rosa_chinensis	RchiOBHm_Chr4g0435551
rosa_laevigata	RLG00000006583
rosa_multiflora	Rmu_sc0001940.1_g000036
rosa_roxburghii	Rroxscaffold_5G00376780
rosa_rugosa	Rorug04G0286100 Rorug04G0286200 Rorug04G0286300 Rorug04G0286400
rosa_samantha	Rh4AG341900 Rh4BG350100 Rh4CG364800 Rh4DG344400
rosa_wichuraiana	Rw4G029820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	39
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	1 cut(s)	451
AccI	GTMKAC	1 cut(s)	434
AccII	CGCG	2 cut(s)	557, 895
AciI	CCGC	5 cut(s)	305, 363, 602, 895, 898
AclI	AACGTT	1 cut(s)	885
AclWI	GGATC	2 cut(s)	416, 429
AcsI	RAATTY	3 cut(s)	610, 856, 874
AcyI	GRCGYC	2 cut(s)	5, 36
AfaI	GTAC	5 cut(s)	119, 191, 299, 704, 815
AfiI	CCNNNNNNNGG	1 cut(s)	451
AflIII	ACRYGT	1 cut(s)	555
AgsI	TTSAA	2 cut(s)	768, 874
AluBI	AGCT	4 cut(s)	21, 381, 619, 665
AluI	AGCT	4 cut(s)	21, 381, 619, 665
Alw21I	GWGCWC	1 cut(s)	870
Alw26I	GTCTC	2 cut(s)	46, 515
AlwI	GGATC	2 cut(s)	416, 429
AoxI	GGCC	1 cut(s)	849
ApeKI	GCWGC	1 cut(s)	233
ApoI	RAATTY	3 cut(s)	610, 856, 874
ArsI	GACNNNNNNTTYG	2 cut(s)	571, 603
AseI	ATTAAT	1 cut(s)	147
Asp700I	GAANNNNTTC	1 cut(s)	504
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	3 cut(s)	46, 313, 396
AsuC2I	CCSGG	2 cut(s)	167, 400
AsuHPI	GGTGA	3 cut(s)	88, 616, 764
AvaII	GGWCC	3 cut(s)	46, 313, 396
BaeI	ACNNNNGTAYC	2 cut(s)	797, 830
BamHI	GGATCC	1 cut(s)	421
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	926
Bbv12I	GWGCWC	1 cut(s)	870
BbvI	GCAGC	1 cut(s)	245
BccI	CCATC	2 cut(s)	796, 834
BceAI	ACGGC	1 cut(s)	203
BcgI	CGANNNNNNTGC	2 cut(s)	163, 197
BciVI	GTATCC	1 cut(s)	648
BcnI	CCSGG	2 cut(s)	167, 400
BcoDI	GTCTC	2 cut(s)	46, 515
BfmI	CTRYAG	2 cut(s)	64, 906
BfoI	RGCGCY	1 cut(s)	8
BfuI	GTATCC	1 cut(s)	648
BisI	GCNGC	3 cut(s)	234, 364, 896
BlsI	GCNGC	3 cut(s)	235, 365, 897
Bme1390I	CCNGG	2 cut(s)	167, 400
Bme18I	GGWCC	3 cut(s)	46, 313, 396
BmgT120I	GGNCC	3 cut(s)	46, 313, 396
BmiI	GGNNCC	2 cut(s)	6, 423
BmrFI	CCNGG	2 cut(s)	167, 400
BpiI	GAAGAC	1 cut(s)	926
BplI	GAGNNNNNCTC	2 cut(s)	518, 550
BpuMI	CCSGG	2 cut(s)	167, 400
BsaAI	YACGTR	1 cut(s)	393
BsaBI	GATNNNNATC	1 cut(s)	426
BsaHI	GRCGYC	2 cut(s)	5, 36
BsaJI	CCNNGG	1 cut(s)	328
BsaWI	WCCGGW	1 cut(s)	651
Bsc4I	CCNNNNNNNGG	1 cut(s)	451
Bse118I	RCCGGY	1 cut(s)	236
Bse8I	GATNNNNATC	1 cut(s)	426
BseDI	CCNNGG	1 cut(s)	328
BseGI	GGATG	1 cut(s)	742
BseJI	GATNNNNATC	1 cut(s)	426
BseLI	CCNNNNNNNGG	1 cut(s)	451
BseMII	CTCAG	3 cut(s)	203, 368, 650
BseRI	GAGGAG	1 cut(s)	542
BseXI	GCAGC	1 cut(s)	245
Bsh1236I	CGCG	2 cut(s)	557, 895
BshFI	GGCC	1 cut(s)	851
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	1 cut(s)	870
BsiSI	CCGG	4 cut(s)	167, 237, 399, 652
BslI	CCNNNNNNNGG	1 cut(s)	451
BsmAI	GTCTC	2 cut(s)	46, 515
BsmBI	CGTCTC	2 cut(s)	46, 515
BsnI	GGCC	1 cut(s)	851
Bsp1286I	GDGCHC	1 cut(s)	870
Bsp1407I	TGTACA	2 cut(s)	117, 189
Bsp143I	GATC	2 cut(s)	126, 421
BspACI	CCGC	5 cut(s)	305, 363, 602, 895, 898
BspANI	GGCC	1 cut(s)	851
BspCNI	CTCAG	3 cut(s)	204, 369, 651
BspFNI	CGCG	2 cut(s)	557, 895
BspLI	GGNNCC	2 cut(s)	6, 423
BspMAI	CTGCAG	1 cut(s)	910
BspPI	GGATC	2 cut(s)	416, 429
BspT107I	GGYRCC	1 cut(s)	4
BsrFI	RCCGGY	1 cut(s)	236
BsrGI	TGTACA	2 cut(s)	117, 189
BssAI	RCCGGY	1 cut(s)	236
BssECI	CCNNGG	1 cut(s)	328
BssMI	GATC	2 cut(s)	126, 421
BssNI	GRCGYC	2 cut(s)	5, 36
Bst4CI	ACNGT	4 cut(s)	104, 115, 686, 810
BstACI	GRCGYC	2 cut(s)	5, 36
BstAUI	TGTACA	2 cut(s)	117, 189
BstBAI	YACGTR	1 cut(s)	393
BstC8I	GCNNGC	5 cut(s)	238, 242, 383, 910, 914
BstDEI	CTNAG	7 cut(s)	10, 152, 212, 377, 659, 732, 987
BstDSI	CCRYGG	1 cut(s)	328
BstF5I	GGATG	1 cut(s)	742
BstFNI	CGCG	2 cut(s)	557, 895
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	2 cut(s)	129, 424
BstMAI	GTCTC	2 cut(s)	46, 515
BstMBI	GATC	2 cut(s)	126, 421
BstMWI	GCNNNNNNNGC	2 cut(s)	671, 956
BstNSI	RCATGY	1 cut(s)	916
BstSCI	CCNGG	2 cut(s)	165, 398
BstSFI	CTRYAG	2 cut(s)	64, 906
BstUI	CGCG	2 cut(s)	557, 895
BstV1I	GCAGC	1 cut(s)	245
BstV2I	GAAGAC	1 cut(s)	926
BstX2I	RGATCY	1 cut(s)	421
BstYI	RGATCY	1 cut(s)	421
BsuI	GTATCC	1 cut(s)	648
BsuRI	GGCC	1 cut(s)	851
BtgI	CCRYGG	1 cut(s)	328
BtsCI	GGATG	1 cut(s)	742
BtsIMutI	CAGTG	3 cut(s)	72, 120, 959
Cac8I	GCNNGC	5 cut(s)	238, 242, 383, 910, 914
CfoI	GCGC	1 cut(s)	7
Cfr10I	RCCGGY	1 cut(s)	236
Cfr13I	GGNCC	3 cut(s)	46, 313, 396
CseI	GACGC	2 cut(s)	563, 901
Csp6I	GTAC	5 cut(s)	118, 190, 298, 703, 814
CviAII	CATG	3 cut(s)	130, 913, 976
CviJI	RGCY	9 cut(s)	21, 218, 236, 340, 381, 619, 665, 851, 986
CviKI_1	RGCY	9 cut(s)	21, 218, 236, 340, 381, 619, 665, 851, 986
CviQI	GTAC	5 cut(s)	118, 190, 298, 703, 814
DdeI	CTNAG	7 cut(s)	10, 152, 212, 377, 659, 732, 987
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	2 cut(s)	128, 423
DpnII	GATC	2 cut(s)	126, 421
Eco147I	AGGCCT	1 cut(s)	851
Eco47I	GGWCC	3 cut(s)	46, 313, 396
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
Esp3I	CGTCTC	2 cut(s)	46, 515
FaeI	CATG	3 cut(s)	133, 916, 979
FaiI	YATR	9 cut(s)	131, 180, 357, 461, 495, 710, 728, 914, 977
FatI	CATG	3 cut(s)	129, 912, 975
FauI	CCCGC	1 cut(s)	891
FblI	GTMKAC	1 cut(s)	434
Fnu4HI	GCNGC	3 cut(s)	234, 364, 896
FokI	GGATG	1 cut(s)	749
Fsp4HI	GCNGC	3 cut(s)	234, 364, 896
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	3 cut(s)	234, 364, 896
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	851
HapII	CCGG	4 cut(s)	167, 237, 399, 652
HgaI	GACGC	2 cut(s)	563, 901
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	2 cut(s)	5, 36
Hin1II	CATG	3 cut(s)	133, 916, 979
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	1 cut(s)	435
HindII	GTYRAC	1 cut(s)	435
HinfI	GANTC	9 cut(s)	30, 87, 170, 201, 349, 696, 755, 797, 902
HpaII	CCGG	4 cut(s)	167, 237, 399, 652
HphI	GGTGA	3 cut(s)	88, 616, 764
Hpy166II	GTNNAC	3 cut(s)	118, 190, 435
Hpy188I	TCNGA	4 cut(s)	46, 55, 378, 477
Hpy188III	TCNNGA	1 cut(s)	524
Hpy8I	GTNNAC	3 cut(s)	118, 190, 435
Hpy99I	CGWCG	7 cut(s)	38, 41, 257, 543, 583, 787, 895
HpyAV	CCTTC	1 cut(s)	499
HpyCH4III	ACNGT	4 cut(s)	104, 115, 686, 810
HpyCH4IV	ACGT	5 cut(s)	36, 392, 569, 581, 885
HpyCH4V	TGCA	4 cut(s)	573, 761, 908, 950
HpyF10VI	GCNNNNNNNGC	2 cut(s)	671, 956
HpyF3I	CTNAG	7 cut(s)	10, 152, 212, 377, 659, 732, 987
HpySE526I	ACGT	5 cut(s)	36, 392, 569, 581, 885
Hsp92I	GRCGYC	2 cut(s)	5, 36
Hsp92II	CATG	3 cut(s)	133, 916, 979
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
KroI	GCCGGC	1 cut(s)	236
KroNI	GCCGGC	1 cut(s)	238
Kzo9I	GATC	2 cut(s)	126, 421
LmnI	GCTCC	2 cut(s)	230, 597
LpnPI	CCDG	9 cut(s)	180, 250, 296, 412, 437, 509, 665, 789, 894
Lsp1109I	GCAGC	1 cut(s)	245
MaeII	ACGT	5 cut(s)	36, 392, 569, 581, 885
MaeIII	GTNAC	4 cut(s)	542, 668, 886, 968
MalI	GATC	2 cut(s)	128, 423
MboI	GATC	2 cut(s)	126, 421
MboII	GAAGA	5 cut(s)	136, 256, 259, 926, 929
MflI	RGATCY	1 cut(s)	421
MhlI	GDGCHC	1 cut(s)	870
MluCI	AATT	6 cut(s)	144, 610, 762, 768, 856, 874
MluI	ACGCGT	1 cut(s)	555
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	4 cut(s)	164, 705, 749, 911
MmeI	TCCRAC	2 cut(s)	208, 312
MnlI	CCTC	6 cut(s)	173, 330, 452, 520, 544, 862
MroNI	GCCGGC	1 cut(s)	236
MroXI	GAANNNNTTC	1 cut(s)	504
MseI	TTAA	2 cut(s)	147, 750
MspI	CCGG	4 cut(s)	167, 237, 399, 652
MspR9I	CCNGG	2 cut(s)	167, 400
MvnI	CGCG	2 cut(s)	557, 895
MwoI	GCNNNNNNNGC	2 cut(s)	671, 956
NaeI	GCCGGC	1 cut(s)	238
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	2 cut(s)	167, 400
NdeII	GATC	2 cut(s)	126, 421
NgoMIV	GCCGGC	1 cut(s)	236
NlaIII	CATG	3 cut(s)	133, 916, 979
NlaIV	GGNNCC	2 cut(s)	6, 423
NspI	RCATGY	1 cut(s)	916
PaeI	GCATGC	1 cut(s)	916
PceI	AGGCCT	1 cut(s)	851
PcsI	WCGNNNNNNNCGW	1 cut(s)	575
PdiI	GCCGGC	1 cut(s)	238
PdmI	GAANNNNTTC	1 cut(s)	504
PfeI	GAWTC	5 cut(s)	30, 87, 201, 349, 797
PflFI	GACNNNGTC	1 cut(s)	38
PflMI	CCANNNNNTGG	1 cut(s)	451
PfoI	TCCNGGA	2 cut(s)	165, 398
PkrI	GCNGC	3 cut(s)	235, 365, 897
PleI	GAGTC	4 cut(s)	164, 704, 749, 910
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	4 cut(s)	164, 704, 749, 910
Ppu21I	YACGTR	1 cut(s)	393
PshBI	ATTAAT	1 cut(s)	147
Psp1406I	AACGTT	1 cut(s)	885
PspN4I	GGNNCC	2 cut(s)	6, 423
PspPI	GGNCC	3 cut(s)	46, 313, 396
PstI	CTGCAG	1 cut(s)	910
PsuI	RGATCY	1 cut(s)	421
PsyI	GACNNNGTC	1 cut(s)	38
RsaI	GTAC	5 cut(s)	119, 191, 299, 704, 815
RsaNI	GTAC	5 cut(s)	118, 190, 298, 703, 814
SalI	GTCGAC	1 cut(s)	433
SaqAI	TTAA	2 cut(s)	147, 750
SatI	GCNGC	3 cut(s)	234, 364, 896
Sau3AI	GATC	2 cut(s)	126, 421
Sau96I	GGNCC	3 cut(s)	46, 313, 396
SchI	GAGTC	4 cut(s)	164, 705, 749, 911
ScrFI	CCNGG	2 cut(s)	167, 400
SduI	GDGCHC	1 cut(s)	870
SfcI	CTRYAG	2 cut(s)	64, 906
SfoI	GGCGCC	1 cut(s)	6
SinI	GGWCC	3 cut(s)	46, 313, 396
SphI	GCATGC	1 cut(s)	916
Sse9I	AATT	6 cut(s)	144, 610, 762, 768, 856, 874
SseBI	AGGCCT	1 cut(s)	851
SsiI	CCGC	5 cut(s)	305, 363, 602, 895, 898
SspDI	GGCGCC	1 cut(s)	4
StuI	AGGCCT	1 cut(s)	851
StyD4I	CCNGG	2 cut(s)	165, 398
TaaI	ACNGT	4 cut(s)	104, 115, 686, 810
TaiI	ACGT	5 cut(s)	39, 395, 572, 584, 888
TasI	AATT	6 cut(s)	144, 610, 762, 768, 856, 874
TatI	WGTACW	2 cut(s)	117, 189
TauI	GCSGC	2 cut(s)	366, 898
TfiI	GAWTC	5 cut(s)	30, 87, 201, 349, 797
Tru1I	TTAA	2 cut(s)	147, 750
Tru9I	TTAA	2 cut(s)	147, 750
TscAI	CASTG	3 cut(s)	79, 120, 966
TseI	GCWGC	1 cut(s)	233
TspDTI	ATGAA	3 cut(s)	372, 513, 964
TspGWI	ACGGA	4 cut(s)	99, 270, 345, 503
TspRI	CASTG	3 cut(s)	79, 120, 966
Tth111I	GACNNNGTC	1 cut(s)	38
Van91I	CCANNNNNTGG	1 cut(s)	451
VpaK11BI	GGWCC	3 cut(s)	46, 313, 396
VspI	ATTAAT	1 cut(s)	147
XapI	RAATTY	3 cut(s)	610, 856, 874
XceI	RCATGY	1 cut(s)	916
XmiI	GTMKAC	1 cut(s)	434
XmnI	GAANNNNTTC	1 cut(s)	504
ZraI	GACGTC	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.