Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0007132

Physical Location & Seq

Genomic Coordinates Reverse (-)

45988213 .. 45988425

Gene Structure 213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0286300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGCACACTCAGTGTGCCTTGTCTGGCCTAGCAAGGCGGCGAGCTATTTGCTTGATCAAATGGACACAACCTCCTAGTGGCATGATGAAATTGAGTGTCGTCAGATTTATTTCCGTGCGGCAACATAGTGGGAAAGTTGTGCTATTTGTAATGATGCTTCTTCGTGATAGAGTTATCTTTCTGGTATGTCACCTCTATGTCAAAGCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005216 GO:0005253 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008509 GO:0008514 GO:0009705 GO:0009987 GO:0010118 GO:0015075 GO:0015103 GO:0015140 GO:0015267 GO:0015318 GO:0015556 GO:0015698 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071423 GO:0071702 GO:0090332 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALMT

Protein Analysis

70

Amino Acids

8.06

Weight (kDa)

11.33

Isoelectric Point (pI)

41.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25480
fragaria_vesca	FvH4_4g27691 FvH4_4g27693 FvH4_4g27693 FvH4_4g27693 FvH4_4g27693 FvH4_4g27693 FvH4_4g27693
malus_domestica	MD13G1044400.v1.1
prunus_persica	Prupe.1G308100_v2.0.a1
pyrus_communis	pycom13g03900 pycom16g03980
rosa_chinensis	RchiOBHm_Chr4g0435551
rosa_laevigata	RLG00000006583
rosa_multiflora	Rmu_sc0001940.1_g000036
rosa_roxburghii	Rroxscaffold_5G00376780
rosa_rugosa	Rorug04G0286100 Rorug04G0286200 Rorug04G0286300 Rorug04G0286400
rosa_samantha	Rh4AG341900 Rh4BG350100 Rh4CG364800 Rh4DG344400
rosa_wichuraiana	Rw4G029820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	37, 118
AdeI	CACNNNGTG	1 cut(s)	12
AfiI	CCNNNNNNNGG	1 cut(s)	77
AluBI	AGCT	1 cut(s)	44
AluI	AGCT	1 cut(s)	44
AoxI	GGCC	1 cut(s)	25
AsuHPI	GGTGA	1 cut(s)	182
BarI	GAAGNNNNNNTAC	2 cut(s)	141, 173
BcgI	CGANNNNNNTGC	2 cut(s)	30, 64
BclI	TGATCA	1 cut(s)	54
BfaI	CTAG	2 cut(s)	29, 75
BisI	GCNGC	2 cut(s)	38, 119
BlsI	GCNGC	2 cut(s)	39, 120
BmsI	GCATC	1 cut(s)	144
BsaXI	ACNNNNNCTCC	2 cut(s)	55, 85
Bsc4I	CCNNNNNNNGG	1 cut(s)	77
BseLI	CCNNNNNNNGG	1 cut(s)	77
BseMII	CTCAG	1 cut(s)	23
BshFI	GGCC	1 cut(s)	27
BslI	CCNNNNNNNGG	1 cut(s)	77
BsnI	GGCC	1 cut(s)	27
Bsp143I	GATC	1 cut(s)	54
BspACI	CCGC	2 cut(s)	37, 118
BspANI	GGCC	1 cut(s)	27
BspCNI	CTCAG	1 cut(s)	22
BssMI	GATC	1 cut(s)	54
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	1 cut(s)	9
BstKTI	GATC	1 cut(s)	57
BstMBI	GATC	1 cut(s)	54
BsuRI	GGCC	1 cut(s)	27
BtsIMutI	CAGTG	1 cut(s)	17
Cac8I	GCNNGC	1 cut(s)	42
CviAII	CATG	1 cut(s)	82
CviJI	RGCY	2 cut(s)	27, 44
CviKI_1	RGCY	2 cut(s)	27, 44
DdeI	CTNAG	1 cut(s)	9
DpnI	GATC	1 cut(s)	56
DpnII	GATC	1 cut(s)	54
DraIII	CACNNNGTG	1 cut(s)	12
FaeI	CATG	1 cut(s)	85
FaiI	YATR	4 cut(s)	83, 126, 187, 198
FatI	CATG	1 cut(s)	81
FbaI	TGATCA	1 cut(s)	54
Fnu4HI	GCNGC	2 cut(s)	38, 119
Fsp4HI	GCNGC	2 cut(s)	38, 119
FspBI	CTAG	2 cut(s)	29, 75
GluI	GCNGC	2 cut(s)	38, 119
HaeIII	GGCC	1 cut(s)	27
Hin1II	CATG	1 cut(s)	85
HphI	GGTGA	1 cut(s)	182
Hpy188I	TCNGA	1 cut(s)	104
Hpy188III	TCNNGA	1 cut(s)	164
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	1 cut(s)	9
Hsp92II	CATG	1 cut(s)	85
Ksp22I	TGATCA	1 cut(s)	54
Kzo9I	GATC	1 cut(s)	54
LpnPI	CCDG	2 cut(s)	9, 167
LweI	GCATC	1 cut(s)	144
MaeI	CTAG	2 cut(s)	29, 75
MaeIII	GTNAC	1 cut(s)	188
MalI	GATC	1 cut(s)	56
MboI	GATC	1 cut(s)	54
MboII	GAAGA	1 cut(s)	152
MluCI	AATT	2 cut(s)	89, 208
MnlI	CCTC	2 cut(s)	81, 203
MslI	CAYNNNNRTG	1 cut(s)	195
NdeII	GATC	1 cut(s)	54
NlaIII	CATG	1 cut(s)	85
NmuCI	GTSAC	1 cut(s)	188
PkrI	GCNGC	2 cut(s)	39, 120
RseI	CAYNNNNRTG	1 cut(s)	195
SatI	GCNGC	2 cut(s)	38, 119
Sau3AI	GATC	1 cut(s)	54
SetI	ASST	3 cut(s)	46, 73, 195
SfaNI	GCATC	1 cut(s)	144
SmiMI	CAYNNNNRTG	1 cut(s)	195
Sse9I	AATT	2 cut(s)	89, 208
SsiI	CCGC	2 cut(s)	37, 118
SspMI	CTAG	2 cut(s)	29, 75
TasI	AATT	2 cut(s)	89, 208
TauI	GCSGC	2 cut(s)	40, 121
TscAI	CASTG	1 cut(s)	17
TseFI	GTSAC	1 cut(s)	188
Tsp45I	GTSAC	1 cut(s)	188
TspDTI	ATGAA	1 cut(s)	101
TspGWI	ACGGA	1 cut(s)	103
TspRI	CASTG	1 cut(s)	17
XspI	CTAG	2 cut(s)	29, 75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.