FvH4_4g27693

Aluminum-activated malate transporter

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
28570803 .. 28574203
3401 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g27693.t3

Sequence Viewer

Length: 1251 bp
ATGTTAGGTTTTCTTGCTAGCTATATCAAGCTTTATCCGCCGATGAAGAGTTATGAATATGGATTTCGGGTGTTCTTGTTGACATACTGTATAGTTTTGGTATCCGGGAGTAATTCGTCATTTATCGGAACAGCAATTTATCGATTGCTACTCATTGGAGTGGGTGCTGGTATCTGTTTAGTTATAAACATATGTATATTACCCATCTGGGCAGGGGAGGATCTCCACAAGCTGGTGGTGAAAAATTTCAAGGGTGTTGCTACTTCATTGGAAGGTGTTGTTAATGGATATCTGCAATGTGTTGAGTATGAGAGAATTCCTTCGAAAATTCTCACATACCAAGCTTCTGATGAACCATTGTATAGTGGATATAGAACCACTATACAATCTTCAACCCAAGAGGAAACCCTGTTAGACTTTGCACTATGGGAGCCACCGCATGGCCCCTATAATTCATTCAATTATCCTTGGAGAAATTATGTCAGAGTTGGTGGTTCTCTGAGGCACTGTGCTTTCATGGTCATGGCAATGCATGGATGCATTCTGTCAGAAATACAGGCACCACCAGAGAAGAGACAGGTTTTTGCAAATGAGCTCCTGAGGGTTGGTACCGAAGGTGCTAAAGTATTACGTGAGCTAGGAAGCAAAGTAGAAAGGATGGAAAAGTTAAGTCCCAAAGACATACTTTTTGATGTGCATGAAGCAGCAGAAGACTTGCAGCATATGATAGACCAGAAATCGTACCTTCTTGTCAATTATGAAGGCTGGGGACCCAAAATACTAGGGCGCAAATGTGAAGATCCTGACAATTTTGTTGATAAAGAGCAGGATAATAAGAACAACGTGATTGAGTCCCTTAGTGAATCCTGGGATGGTCAAAATGTTGGAACTGGTGGTGGTGGCGGCGATCCTTCAATGTCACAATGGATATCTACAGATAGTGTGTTAAAGAAATCATTAACAGCATGGCCCTCACGCCTTACATCGTTTACTGGAAATCTTATGCAACCTCAACCTGAACCAGAAGAATCAAAAGTATATGAAAGCGCCAGCTCCTTATCCTTAGCAACATTTACATCTCTTCTGATTGAGTTTGTGGCAAGGCTTCAAAATTTAGTGGATGAATTTGTAGAGCTTAGTGAGAAAGCAAACTTTAAGGATCCTATGGACTCATCGGAGACCAAAGAGGTAGGCGGGTTCTGGACCAGAATATATCGGCGCTTCCGGTCCAAGCCTGAAGAGTTAGCTTGA

Protein Analysis

417

Amino Acids

46.79

Weight (kDa)

5.24

Isoelectric Point (pI)

40.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ALMT PF11744 69 - 547 1.6e-177 Aluminium activated malate transporter
FUSC_2 PF13515 106 - 229 1.2e-11 Fusaric acid resistance protein-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 185
Acc65I GGTACC 1 cut(s) 608
AccB1I GGYRCC 2 cut(s) 559, 608
AccB7I CCANNNNNTGG 2 cut(s) 232, 440
AciI CCGC 4 cut(s) 38, 437, 903, 1194
AclWI GGATC 5 cut(s) 228, 794, 902, 1154, 1167
AcsI RAATTY 5 cut(s) 244, 315, 327, 1111, 1124
AfaI GTAC 2 cut(s) 610, 743
AfiI CCNNNNNNNGG 2 cut(s) 232, 440
AgsI TTSAA 5 cut(s) 250, 393, 460, 915, 1109
AjnI CCWGG 1 cut(s) 866
AluBI AGCT 9 cut(s) 21, 31, 232, 344, 595, 637, 1053, 1135, 1247
AluI AGCT 9 cut(s) 21, 31, 232, 344, 595, 637, 1053, 1135, 1247
Alw21I GWGCWC 1 cut(s) 597
Alw26I GTCTC 2 cut(s) 568, 1172
AlwI GGATC 5 cut(s) 228, 794, 902, 1154, 1167
AoxI GGCC 2 cut(s) 442, 968
ApeKI GCWGC 2 cut(s) 704, 718
ApoI RAATTY 5 cut(s) 244, 315, 327, 1111, 1124
ArsI GACNNNNNNTTYG 2 cut(s) 671, 703
Asp700I GAANNNNTTC 2 cut(s) 245, 319
Asp718I GGTACC 1 cut(s) 608
AspLEI GCGC 3 cut(s) 789, 1049, 1221
AspS9I GGNCC 5 cut(s) 443, 770, 969, 1203, 1227
AsuC2I CCSGG 1 cut(s) 106
AsuHPI GGTGA 1 cut(s) 250
AsuII TTCGAA 1 cut(s) 323
AsuNHI GCTAGC 1 cut(s) 17
AvaII GGWCC 3 cut(s) 770, 1203, 1227
AxyI CCTNAGG 1 cut(s) 599
BamHI GGATCC 1 cut(s) 1159
BanI GGYRCC 2 cut(s) 559, 608
BanII GRGCYC 1 cut(s) 597
BbsI GAAGAC 1 cut(s) 717
Bbv12I GWGCWC 1 cut(s) 597
BbvI GCAGC 2 cut(s) 716, 730
BccI CCATC 3 cut(s) 212, 652, 866
BciT130I CCWGG 1 cut(s) 868
BciVI GTATCC 1 cut(s) 112
BcnI CCSGG 1 cut(s) 106
BcoDI GTCTC 2 cut(s) 568, 1172
BfaI CTAG 3 cut(s) 18, 638, 782
BfmI CTRYAG 1 cut(s) 933
BfoI RGCGCY 2 cut(s) 1050, 1222
BfuI GTATCC 1 cut(s) 112
BisI GCNGC 3 cut(s) 705, 719, 904
BlsI GCNGC 3 cut(s) 706, 720, 905
Bme1390I CCNGG 2 cut(s) 106, 868
Bme18I GGWCC 3 cut(s) 770, 1203, 1227
BmgT120I GGNCC 5 cut(s) 443, 770, 969, 1203, 1227
BmiI GGNNCC 7 cut(s) 432, 445, 561, 610, 771, 772, 1161
BmrFI CCNGG 2 cut(s) 106, 868
BmsI GCATC 1 cut(s) 527
BmtI GCTAGC 1 cut(s) 21
BpiI GAAGAC 1 cut(s) 717
Bpu10I CCTNAGC 1 cut(s) 1063
Bpu14I TTCGAA 1 cut(s) 323
BpuMI CCSGG 1 cut(s) 106
Bsa29I ATCGAT 1 cut(s) 142
BsaAI YACGTR 1 cut(s) 632
BsaI GGTCTC 1 cut(s) 1172
BsaJI CCNNGG 2 cut(s) 467, 867
BsaWI WCCGGW 1 cut(s) 1224
Bsc4I CCNNNNNNNGG 2 cut(s) 232, 440
Bse1I ACTGG 2 cut(s) 895, 997
Bse21I CCTNAGG 1 cut(s) 599
Bse3DI GCAATG 2 cut(s) 302, 534
BseBI CCWGG 1 cut(s) 868
BseCI ATCGAT 1 cut(s) 142
BseDI CCNNGG 2 cut(s) 467, 867
BseGI GGATG 4 cut(s) 542, 663, 877, 1126
BseLI CCNNNNNNNGG 2 cut(s) 232, 440
BseMI GCAATG 2 cut(s) 302, 534
BseMII CTCAG 2 cut(s) 491, 590
BseNI ACTGG 2 cut(s) 895, 997
BseXI GCAGC 2 cut(s) 716, 730
BseYI CCCAGC 1 cut(s) 765
BshFI GGCC 2 cut(s) 444, 970
BshNI GGYRCC 2 cut(s) 559, 608
BshVI ATCGAT 1 cut(s) 142
BsiHKAI GWGCWC 1 cut(s) 597
BsiSI CCGG 2 cut(s) 105, 1225
BslFI GGGAC 3 cut(s) 657, 783, 838
BslI CCNNNNNNNGG 2 cut(s) 232, 440
BsmAI GTCTC 2 cut(s) 568, 1172
BsmFI GGGAC 3 cut(s) 657, 783, 838
BsmI GAATGC 1 cut(s) 540
BsnI GGCC 2 cut(s) 444, 970
Bso31I GGTCTC 1 cut(s) 1172
Bsp119I TTCGAA 1 cut(s) 323
Bsp1286I GDGCHC 1 cut(s) 597
Bsp143I GATC 4 cut(s) 220, 799, 907, 1159
BspACI CCGC 4 cut(s) 38, 437, 903, 1194
BspANI GGCC 2 cut(s) 444, 970
BspCNI CTCAG 2 cut(s) 492, 591
BspDI ATCGAT 1 cut(s) 142
BspLI GGNNCC 7 cut(s) 432, 445, 561, 610, 771, 772, 1161
BspOI GCTAGC 1 cut(s) 21
BspPI GGATC 5 cut(s) 228, 794, 902, 1154, 1167
BspT104I TTCGAA 1 cut(s) 323
BspT107I GGYRCC 2 cut(s) 559, 608
BspTNI GGTCTC 1 cut(s) 1172
BsrDI GCAATG 2 cut(s) 302, 534
BsrI ACTGG 2 cut(s) 895, 997
BssECI CCNNGG 2 cut(s) 467, 867
BssMI GATC 4 cut(s) 220, 799, 907, 1159
BssT1I CCWWGG 1 cut(s) 467
Bst2UI CCWGG 1 cut(s) 868
Bst4CI ACNGT 2 cut(s) 89, 509
Bst6I CTCTTC 4 cut(s) 41, 566, 1086, 1233
BstBAI YACGTR 1 cut(s) 632
BstBI TTCGAA 1 cut(s) 323
BstC8I GCNNGC 2 cut(s) 19, 1051
BstDEI CTNAG 5 cut(s) 500, 599, 857, 1063, 1136
BstF5I GGATG 4 cut(s) 542, 663, 877, 1126
BstH2I RGCGCY 2 cut(s) 1050, 1222
BstHHI GCGC 3 cut(s) 789, 1049, 1221
BstKTI GATC 4 cut(s) 223, 802, 910, 1162
BstMAI GTCTC 2 cut(s) 568, 1172
BstMBI GATC 4 cut(s) 220, 799, 907, 1159
BstMWI GCNNNNNNNGC 1 cut(s) 37
BstNI CCWGG 1 cut(s) 868
BstSCI CCNGG 2 cut(s) 104, 866
BstSFI CTRYAG 1 cut(s) 933
BstV1I GCAGC 2 cut(s) 716, 730
BstV2I GAAGAC 1 cut(s) 717
BstX2I RGATCY 3 cut(s) 220, 799, 1159
BstYI RGATCY 3 cut(s) 220, 799, 1159
Bsu15I ATCGAT 1 cut(s) 142
Bsu36I CCTNAGG 1 cut(s) 599
BsuI GTATCC 1 cut(s) 112
BsuRI GGCC 2 cut(s) 444, 970
BsuTUI ATCGAT 1 cut(s) 142
BtsCI GGATG 4 cut(s) 542, 663, 877, 1126
BtsIMutI CAGTG 1 cut(s) 505
Cac8I GCNNGC 2 cut(s) 19, 1051
CfoI GCGC 3 cut(s) 789, 1049, 1221
Cfr13I GGNCC 5 cut(s) 443, 770, 969, 1203, 1227
ClaI ATCGAT 1 cut(s) 142
Csp6I GTAC 2 cut(s) 609, 742
CviAII CATG 6 cut(s) 440, 517, 523, 533, 698, 966
CviQI GTAC 2 cut(s) 609, 742
DdeI CTNAG 5 cut(s) 500, 599, 857, 1063, 1136
DpnI GATC 4 cut(s) 222, 801, 909, 1161
DpnII GATC 4 cut(s) 220, 799, 907, 1159
Eam1104I CTCTTC 4 cut(s) 41, 566, 1086, 1233
EarI CTCTTC 4 cut(s) 41, 566, 1086, 1233
EciI GGCGGA 1 cut(s) 27
Ecl136II GAGCTC 1 cut(s) 595
Eco130I CCWWGG 1 cut(s) 467
Eco24I GRGCYC 1 cut(s) 597
Eco31I GGTCTC 1 cut(s) 1172
Eco32I GATATC 2 cut(s) 290, 930
Eco47I GGWCC 3 cut(s) 770, 1203, 1227
Eco53kI GAGCTC 1 cut(s) 595
Eco81I CCTNAGG 1 cut(s) 599
EcoICRI GAGCTC 1 cut(s) 595
EcoO109I RGGNCCY 1 cut(s) 770
EcoRI GAATTC 1 cut(s) 315
EcoRII CCWGG 1 cut(s) 866
EcoRV GATATC 2 cut(s) 290, 930
EcoT14I CCWWGG 1 cut(s) 467
EcoT22I ATGCAT 2 cut(s) 534, 542
EcoT38I GRGCYC 1 cut(s) 597
ErhI CCWWGG 1 cut(s) 467
FaeI CATG 6 cut(s) 443, 520, 526, 536, 701, 969
FalI AAGNNNNNCTT 2 cut(s) 669, 701
FaqI GGGAC 3 cut(s) 657, 783, 838
FatI CATG 6 cut(s) 439, 516, 522, 532, 697, 965
FauI CCCGC 1 cut(s) 1187
FauNDI CATATG 2 cut(s) 191, 723
Fnu4HI GCNGC 3 cut(s) 705, 719, 904
FokI GGATG 4 cut(s) 549, 670, 884, 1133
FriOI GRGCYC 1 cut(s) 597
Fsp4HI GCNGC 3 cut(s) 705, 719, 904
FspBI CTAG 3 cut(s) 18, 638, 782
GlaI GCGC 3 cut(s) 788, 1048, 1220
GluI GCNGC 3 cut(s) 705, 719, 904
GsaI CCCAGC 1 cut(s) 769
HaeII RGCGCY 2 cut(s) 1050, 1222
HaeIII GGCC 2 cut(s) 444, 970
HapII CCGG 2 cut(s) 105, 1225
HhaI GCGC 3 cut(s) 789, 1049, 1221
Hin1II CATG 6 cut(s) 443, 520, 526, 536, 701, 969
Hin6I GCGC 3 cut(s) 787, 1047, 1219
HinP1I GCGC 3 cut(s) 787, 1047, 1219
HincII GTYRAC 1 cut(s) 81
HindII GTYRAC 1 cut(s) 81
HindIII AAGCTT 2 cut(s) 29, 342
HinfI GANTC 4 cut(s) 851, 863, 1028, 1169
HpaII CCGG 2 cut(s) 105, 1225
HphI GGTGA 1 cut(s) 250
Hpy166II GTNNAC 2 cut(s) 81, 990
Hpy188I TCNGA 7 cut(s) 128, 349, 485, 501, 550, 1086, 1177
Hpy188III TCNNGA 3 cut(s) 598, 803, 1201
Hpy8I GTNNAC 2 cut(s) 81, 990
HpyAV CCTTC 6 cut(s) 266, 330, 608, 755, 755, 921
HpyCH4III ACNGT 2 cut(s) 89, 509
HpyCH4IV ACGT 2 cut(s) 631, 843
HpyCH4V TGCA 8 cut(s) 295, 422, 532, 540, 587, 697, 718, 1006
HpyF10VI GCNNNNNNNGC 1 cut(s) 37
HpyF3I CTNAG 5 cut(s) 500, 599, 857, 1063, 1136
HpySE526I ACGT 2 cut(s) 631, 843
Hsp92II CATG 6 cut(s) 443, 520, 526, 536, 701, 969
HspAI GCGC 3 cut(s) 787, 1047, 1219
KflI GGGWCCC 1 cut(s) 770
KpnI GGTACC 1 cut(s) 612
Kzo9I GATC 4 cut(s) 220, 799, 907, 1159
LmnI GCTCC 3 cut(s) 430, 600, 1058
Lsp1109I GCAGC 2 cut(s) 716, 730
LweI GCATC 1 cut(s) 527
MaeI CTAG 3 cut(s) 18, 638, 782
MaeII ACGT 2 cut(s) 631, 843
MaeIII GTNAC 1 cut(s) 918
MalI GATC 4 cut(s) 222, 801, 909, 1161
MboI GATC 4 cut(s) 220, 799, 907, 1159
MboII GAAGA 8 cut(s) 58, 381, 583, 722, 809, 1037, 1073, 1250
MflI RGATCY 3 cut(s) 220, 799, 1159
MhlI GDGCHC 1 cut(s) 597
MlyI GAGTC 2 cut(s) 860, 1163
MmeI TCCRAC 1 cut(s) 865
MnlI CCTC 7 cut(s) 211, 394, 495, 594, 982, 1020, 1180
Mph1103I ATGCAT 2 cut(s) 534, 542
MroXI GAANNNNTTC 2 cut(s) 245, 319
MseI TTAA 5 cut(s) 282, 668, 947, 959, 1155
MslI CAYNNNNRTG 3 cut(s) 158, 521, 527
MspI CCGG 2 cut(s) 105, 1225
MspR9I CCNGG 2 cut(s) 106, 868
Mva1269I GAATGC 1 cut(s) 540
MvaI CCWGG 1 cut(s) 868
MwoI GCNNNNNNNGC 1 cut(s) 37
NciI CCSGG 1 cut(s) 106
NdeI CATATG 2 cut(s) 191, 723
NdeII GATC 4 cut(s) 220, 799, 907, 1159
NheI GCTAGC 1 cut(s) 17
NlaIII CATG 6 cut(s) 443, 520, 526, 536, 701, 969
NlaIV GGNNCC 7 cut(s) 432, 445, 561, 610, 771, 772, 1161
NmuCI GTSAC 1 cut(s) 918
NsiI ATGCAT 2 cut(s) 534, 542
NspV TTCGAA 1 cut(s) 323
PctI GAATGC 1 cut(s) 540
PdmI GAANNNNTTC 2 cut(s) 245, 319
PfeI GAWTC 2 cut(s) 863, 1028
PflMI CCANNNNNTGG 2 cut(s) 232, 440
PfoI TCCNGGA 1 cut(s) 104
PkrI GCNGC 3 cut(s) 706, 720, 905
PleI GAGTC 2 cut(s) 859, 1163
PpsI GAGTC 2 cut(s) 859, 1163
Ppu21I YACGTR 1 cut(s) 632
PpuMI RGGWCCY 1 cut(s) 770
PsiI TTATAA 1 cut(s) 185
Psp124BI GAGCTC 1 cut(s) 597
Psp5II RGGWCCY 1 cut(s) 770
Psp6I CCWGG 1 cut(s) 866
PspFI CCCAGC 1 cut(s) 765
PspGI CCWGG 1 cut(s) 866
PspN4I GGNNCC 7 cut(s) 432, 445, 561, 610, 771, 772, 1161
PspPI GGNCC 5 cut(s) 443, 770, 969, 1203, 1227
PspPPI RGGWCCY 1 cut(s) 770
PsuI RGATCY 3 cut(s) 220, 799, 1159
RsaI GTAC 2 cut(s) 610, 743
RsaNI GTAC 2 cut(s) 609, 742
RseI CAYNNNNRTG 3 cut(s) 158, 521, 527
SacI GAGCTC 1 cut(s) 597
SaqAI TTAA 5 cut(s) 282, 668, 947, 959, 1155
SatI GCNGC 3 cut(s) 705, 719, 904
Sau3AI GATC 4 cut(s) 220, 799, 907, 1159
Sau96I GGNCC 5 cut(s) 443, 770, 969, 1203, 1227
SchI GAGTC 2 cut(s) 860, 1163
ScrFI CCNGG 2 cut(s) 106, 868
SduI GDGCHC 1 cut(s) 597
SfaNI GCATC 1 cut(s) 527
SfcI CTRYAG 1 cut(s) 933
SfuI TTCGAA 1 cut(s) 323
SinI GGWCC 3 cut(s) 770, 1203, 1227
SmiMI CAYNNNNRTG 3 cut(s) 158, 521, 527
SsiI CCGC 4 cut(s) 38, 437, 903, 1194
SspMI CTAG 3 cut(s) 18, 638, 782
SstI GAGCTC 1 cut(s) 597
StyD4I CCNGG 2 cut(s) 104, 866
StyI CCWWGG 1 cut(s) 467
TaaI ACNGT 2 cut(s) 89, 509
TaiI ACGT 2 cut(s) 634, 846
TaqI TCGA 2 cut(s) 142, 323
TauI GCSGC 1 cut(s) 906
TfiI GAWTC 2 cut(s) 863, 1028
Tru1I TTAA 5 cut(s) 282, 668, 947, 959, 1155
Tru9I TTAA 5 cut(s) 282, 668, 947, 959, 1155
TscAI CASTG 1 cut(s) 512
TseFI GTSAC 1 cut(s) 918
TseI GCWGC 2 cut(s) 704, 718
Tsp45I GTSAC 1 cut(s) 918
TspRI CASTG 1 cut(s) 512
Van91I CCANNNNNTGG 2 cut(s) 232, 440
VpaK11BI GGWCC 3 cut(s) 770, 1203, 1227
XapI RAATTY 5 cut(s) 244, 315, 327, 1111, 1124
XmnI GAANNNNTTC 2 cut(s) 245, 319
XspI CTAG 3 cut(s) 18, 638, 782
Zsp2I ATGCAT 2 cut(s) 534, 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.