FvH4_4g28110

Leucoanthocyanidin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0016318
Physical Location & Seq
Forward (+)
28851455 .. 28854637
3183 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g28110.t1

Sequence Viewer

Length: 1053 bp
ATGACGGTGTCACCTTCTATTGCCTCTGCTGCACAGAGTGGCCGAGTCCTCATTATCGGCGCCACCGGCTTCATCGGCAAGTTCGTCGCCGAAGCCAGCCTCGACTCCGGCCTTCCCACTTACGTCCTCGTCCGACCCGGCCCGTCTCGTCCTTCCAAGTCAGACACCATCAAGTCCCTCAAAGACAGAGGCGCCATCATCCTCCATGGGGTGATGAGTGATAAGCCATTGATGGAGAAGCTACTGAAAGAGCATGAGATCGAGACAGTCATATCAGCCGTGGGTGGTGCAACAATTTTAGACCAGATCACCCTAGTCGAAGCCATTACTTCTGTAGGAACGGTCAAGAGGTTTCTGCCGTCGGAGTTCGGGCACGACGTGGACCGGGCCGACCCGGTGGAACCGGGTCTGACCATGTATTTGGAGAAGCGCAAGGTGAGGCGTGCGATTGAGAAGAGTGGGGTCCCTTACACGTACATTTGTTGCAATTCTATTGCTTCTTGGCCCTACTATGACAACAAGCATCCTTCCGAGGTTGTTCCACCGTTGGATCAGTTCCAGATCTACGGTGATGGCACGGTTAAAGCCTACTTCGTCGACGGCCCTGATATCGGAAAATTCACAATGAAGACGGTGGACGACATCAGAACTATGAACAAAAATGTTCACTTTCGACCTTCAAGCAATTTGTATGATATCAATGGACTTGCTTCACTGTGGGAGAAGAAAATTGGTCGCACCCTCCCAAGAGTTACCATAACTGAGAACGACCTATTGGCTATGGCTGCAGAGAACCGTATACCAGAAAGTATTGTAGCCTCGTTCACTCATGATATCTTCATCAAAGGTTGTCAAACCAACTTCCCCGTTGAAGGTCCGAATGATGTTGATATAGGCACTCTCTACCCTGAAGAGTCTTTTAGGACTTTGGATGAGTGCTTCAATGATTTTCTTGTCAAAGTTGGGGGGAAGCTAGAGACTGATAAACTTGCCGCCAAGAACACGGCGGCGATCGGAGTTGAACCTATGGCAATCACGGCTACTTGTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00941 ko01110 map00941 map01110
Pfam Domains
Protein Families
NmrA

Protein Analysis

351

Amino Acids

38.2

Weight (kDa)

5.63

Isoelectric Point (pI)

31.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 14 - 312 5.3e-56 NmrA-like family
Epimerase PF01370 16 - 102 2.7e-06 NAD dependent epimerase/dehydratase family
NAD_binding_10 PF13460 20 - 168 3.3e-07 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016318)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g28110
malus_domestica MD13G1046900.v1.1 MD16G1048500.v1.1
prunus_persica Prupe.1G305100_v2.0.a1
pyrus_communis pycom13g04100 pycom16g04240
rosa_chinensis RchiOBHm_Chr4g0435881
rosa_laevigata RLG00000006553
rosa_multiflora Rmu_sc0003165.1_g000010
rosa_roxburghii Rroxscaffold_5G00377050
rosa_rugosa Rorug04G0290200
rosa_samantha Rh4BG353500 Rh4CG367900 Rh4DG347300
rosa_wichuraiana Rw4G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 59, 191
AccI GTMKAC 2 cut(s) 597, 799
AciI CCGC 2 cut(s) 993, 1007
AclWI GGATC 1 cut(s) 558
AcoI YGGCCR 1 cut(s) 40
AcsI RAATTY 1 cut(s) 617
AcuI CTGAAG 1 cut(s) 930
AcyI GRCGYC 2 cut(s) 60, 192
AdeI CACNNNGTG 2 cut(s) 38, 379
AfaI GTAC 1 cut(s) 476
AfiI CCNNNNNNNGG 3 cut(s) 208, 611, 872
AflIII ACRYGT 1 cut(s) 471
AgsI TTSAA 4 cut(s) 681, 872, 943, 1022
AjiI CACGTC 1 cut(s) 379
AjuI GAANNNNNNNTTGG 2 cut(s) 758, 790
AluBI AGCT 2 cut(s) 241, 973
AluI AGCT 2 cut(s) 241, 973
Alw26I GTCTC 3 cut(s) 150, 257, 971
AlwI GGATC 1 cut(s) 558
AoxI GGCC 6 cut(s) 40, 109, 139, 387, 503, 601
ApeKI GCWGC 2 cut(s) 29, 785
ApoI RAATTY 1 cut(s) 617
ArsI GACNNNNNNTTYG 2 cut(s) 403, 435
AspLEI GCGC 3 cut(s) 62, 194, 432
AspS9I GGNCC 7 cut(s) 140, 382, 387, 463, 504, 602, 875
AsuC2I CCSGG 4 cut(s) 138, 386, 395, 405
AsuHPI GGTGA 5 cut(s) 3, 223, 301, 448, 581
AvaII GGWCC 3 cut(s) 382, 463, 875
BaeGI GKGCMC 1 cut(s) 375
BanI GGYRCC 2 cut(s) 59, 191
BbsI GAAGAC 1 cut(s) 635
BbvI GCAGC 2 cut(s) 16, 772
BccI CCATC 4 cut(s) 176, 203, 226, 566
BceAI ACGGC 4 cut(s) 263, 343, 616, 1020
BcgI CGANNNNNNTGC 2 cut(s) 67, 101
BcnI CCSGG 4 cut(s) 138, 386, 395, 405
BcoDI GTCTC 3 cut(s) 150, 257, 971
BfaI CTAG 2 cut(s) 314, 974
BfmI CTRYAG 2 cut(s) 333, 786
BfoI RGCGCY 2 cut(s) 63, 195
BglII AGATCT 1 cut(s) 561
BisI GCNGC 4 cut(s) 30, 786, 993, 1008
BlsI GCNGC 4 cut(s) 31, 787, 994, 1009
Bme1390I CCNGG 4 cut(s) 138, 386, 395, 405
Bme18I GGWCC 3 cut(s) 382, 463, 875
BmgBI CACGTC 1 cut(s) 379
BmgT120I GGNCC 7 cut(s) 140, 382, 387, 463, 504, 602, 875
BmiI GGNNCC 5 cut(s) 61, 193, 402, 464, 465
BmrFI CCNGG 4 cut(s) 138, 386, 395, 405
BmsI GCATC 1 cut(s) 532
BpiI GAAGAC 1 cut(s) 635
BpuMI CCSGG 4 cut(s) 138, 386, 395, 405
BsaAI YACGTR 1 cut(s) 474
BsaHI GRCGYC 2 cut(s) 60, 192
BsaJI CCNNGG 3 cut(s) 205, 279, 531
Bsc4I CCNNNNNNNGG 3 cut(s) 208, 611, 872
Bse118I RCCGGY 1 cut(s) 65
BseDI CCNNGG 3 cut(s) 205, 279, 531
BseGI GGATG 3 cut(s) 198, 523, 937
BseLI CCNNNNNNNGG 3 cut(s) 208, 611, 872
BseMII CTCAG 1 cut(s) 753
BseSI GKGCMC 1 cut(s) 375
BseXI GCAGC 2 cut(s) 16, 772
BsgI GTGCAG 1 cut(s) 15
Bsh1285I CGRYCG 1 cut(s) 1014
BshFI GGCC 6 cut(s) 42, 111, 141, 389, 505, 603
BshNI GGYRCC 2 cut(s) 59, 191
BsiEI CGRYCG 1 cut(s) 1014
BsiSI CCGG 6 cut(s) 66, 108, 138, 385, 395, 404
BslFI GGGAC 2 cut(s) 160, 449
BslI CCNNNNNNNGG 3 cut(s) 208, 611, 872
BsmAI GTCTC 3 cut(s) 150, 257, 971
BsmBI CGTCTC 1 cut(s) 150
BsmFI GGGAC 2 cut(s) 160, 449
BsnI GGCC 6 cut(s) 42, 111, 141, 389, 505, 603
Bsp1286I GDGCHC 1 cut(s) 375
Bsp143I GATC 5 cut(s) 258, 306, 550, 561, 1011
Bsp19I CCATGG 1 cut(s) 205
BspACI CCGC 2 cut(s) 993, 1007
BspANI GGCC 6 cut(s) 42, 111, 141, 389, 505, 603
BspCNI CTCAG 1 cut(s) 754
BspHI TCATGA 1 cut(s) 829
BspLI GGNNCC 5 cut(s) 61, 193, 402, 464, 465
BspMAI CTGCAG 1 cut(s) 790
BspPI GGATC 1 cut(s) 558
BspT107I GGYRCC 2 cut(s) 59, 191
BsrFI RCCGGY 1 cut(s) 65
BssAI RCCGGY 1 cut(s) 65
BssECI CCNNGG 3 cut(s) 205, 279, 531
BssMI GATC 5 cut(s) 258, 306, 550, 561, 1011
BssNAI GTATAC 1 cut(s) 800
BssNI GRCGYC 2 cut(s) 60, 192
BssT1I CCWWGG 1 cut(s) 205
Bst1107I GTATAC 1 cut(s) 800
Bst4CI ACNGT 9 cut(s) 7, 268, 343, 546, 569, 580, 634, 717, 797
Bst6I CTCTTC 2 cut(s) 449, 906
BstACI GRCGYC 2 cut(s) 60, 192
BstBAI YACGTR 1 cut(s) 474
BstC8I GCNNGC 2 cut(s) 97, 444
BstDEI CTNAG 1 cut(s) 762
BstDSI CCRYGG 2 cut(s) 205, 279
BstF5I GGATG 3 cut(s) 198, 523, 937
BstH2I RGCGCY 2 cut(s) 63, 195
BstHHI GCGC 3 cut(s) 62, 194, 432
BstKTI GATC 5 cut(s) 261, 309, 553, 564, 1014
BstMAI GTCTC 3 cut(s) 150, 257, 971
BstMBI GATC 5 cut(s) 258, 306, 550, 561, 1011
BstMCI CGRYCG 1 cut(s) 1014
BstMWI GCNNNNNNNGC 6 cut(s) 29, 66, 75, 785, 1037, 1046
BstSCI CCNGG 4 cut(s) 136, 384, 393, 403
BstSFI CTRYAG 2 cut(s) 333, 786
BstSLI GKGCMC 1 cut(s) 375
BstV1I GCAGC 2 cut(s) 16, 772
BstV2I GAAGAC 1 cut(s) 635
BstX2I RGATCY 1 cut(s) 561
BstXI CCANNNNNNTGG 1 cut(s) 421
BstYI RGATCY 1 cut(s) 561
BstZ17I GTATAC 1 cut(s) 800
BsuRI GGCC 6 cut(s) 42, 111, 141, 389, 505, 603
BtgI CCRYGG 2 cut(s) 205, 279
BtrI CACGTC 1 cut(s) 379
BtsCI GGATG 3 cut(s) 198, 523, 937
BtsIMutI CAGTG 1 cut(s) 713
Cac8I GCNNGC 2 cut(s) 97, 444
CciI TCATGA 1 cut(s) 829
CfoI GCGC 3 cut(s) 62, 194, 432
Cfr10I RCCGGY 1 cut(s) 65
Cfr13I GGNCC 7 cut(s) 140, 382, 387, 463, 504, 602, 875
Csp6I GTAC 1 cut(s) 475
CviAII CATG 4 cut(s) 206, 254, 415, 830
CviQI GTAC 1 cut(s) 475
DdeI CTNAG 1 cut(s) 762
DinI GGCGCC 2 cut(s) 61, 193
DpnI GATC 5 cut(s) 260, 308, 552, 563, 1013
DpnII GATC 5 cut(s) 258, 306, 550, 561, 1011
DraIII CACNNNGTG 2 cut(s) 38, 379
EaeI YGGCCR 1 cut(s) 40
Eam1104I CTCTTC 2 cut(s) 449, 906
EarI CTCTTC 2 cut(s) 449, 906
Eco130I CCWWGG 1 cut(s) 205
Eco32I GATATC 3 cut(s) 610, 697, 835
Eco47I GGWCC 3 cut(s) 382, 463, 875
Eco57I CTGAAG 1 cut(s) 930
EcoO109I RGGNCCY 1 cut(s) 463
EcoRV GATATC 3 cut(s) 610, 697, 835
EcoT14I CCWWGG 1 cut(s) 205
EgeI GGCGCC 2 cut(s) 61, 193
EheI GGCGCC 2 cut(s) 61, 193
ErhI CCWWGG 1 cut(s) 205
Esp3I CGTCTC 1 cut(s) 150
FaeI CATG 4 cut(s) 209, 257, 418, 833
FaqI GGGAC 2 cut(s) 160, 449
FatI CATG 4 cut(s) 205, 253, 414, 829
FblI GTMKAC 2 cut(s) 597, 799
Fnu4HI GCNGC 4 cut(s) 30, 786, 993, 1008
FokI GGATG 3 cut(s) 185, 510, 944
Fsp4HI GCNGC 4 cut(s) 30, 786, 993, 1008
FspBI CTAG 2 cut(s) 314, 974
GlaI GCGC 3 cut(s) 61, 193, 431
GluI GCNGC 4 cut(s) 30, 786, 993, 1008
HaeII RGCGCY 2 cut(s) 63, 195
HaeIII GGCC 6 cut(s) 42, 111, 141, 389, 505, 603
HapII CCGG 6 cut(s) 66, 108, 138, 385, 395, 404
HhaI GCGC 3 cut(s) 62, 194, 432
Hin1I GRCGYC 2 cut(s) 60, 192
Hin1II CATG 4 cut(s) 209, 257, 418, 833
Hin6I GCGC 3 cut(s) 60, 192, 430
HinP1I GCGC 3 cut(s) 60, 192, 430
HincII GTYRAC 1 cut(s) 598
HindII GTYRAC 1 cut(s) 598
HinfI GANTC 3 cut(s) 45, 104, 914
HpaII CCGG 6 cut(s) 66, 108, 138, 385, 395, 404
HphI GGTGA 5 cut(s) 3, 223, 301, 448, 581
Hpy166II GTNNAC 6 cut(s) 382, 598, 637, 667, 800, 825
Hpy188I TCNGA 9 cut(s) 134, 163, 364, 411, 532, 614, 647, 879, 1016
Hpy188III TCNNGA 4 cut(s) 262, 346, 559, 830
Hpy8I GTNNAC 6 cut(s) 382, 598, 637, 667, 800, 825
Hpy99I CGWCG 5 cut(s) 89, 364, 380, 599, 602
HpyAV CCTTC 6 cut(s) 24, 122, 162, 537, 687, 866
HpyCH4III ACNGT 9 cut(s) 7, 268, 343, 546, 569, 580, 634, 717, 797
HpyCH4IV ACGT 3 cut(s) 123, 378, 473
HpyCH4V TGCA 4 cut(s) 32, 290, 486, 788
HpyF10VI GCNNNNNNNGC 6 cut(s) 29, 66, 75, 785, 1037, 1046
HpyF3I CTNAG 1 cut(s) 762
HpySE526I ACGT 3 cut(s) 123, 378, 473
Hsp92I GRCGYC 2 cut(s) 60, 192
Hsp92II CATG 4 cut(s) 209, 257, 418, 833
HspAI GCGC 3 cut(s) 60, 192, 430
KasI GGCGCC 2 cut(s) 59, 191
KflI GGGWCCC 1 cut(s) 463
Kzo9I GATC 5 cut(s) 258, 306, 550, 561, 1011
Lsp1109I GCAGC 2 cut(s) 16, 772
LweI GCATC 1 cut(s) 532
MaeI CTAG 2 cut(s) 314, 974
MaeII ACGT 3 cut(s) 123, 378, 473
MaeIII GTNAC 2 cut(s) 9, 751
MalI GATC 5 cut(s) 260, 308, 552, 563, 1013
MboI GATC 5 cut(s) 258, 306, 550, 561, 1011
MboII GAAGA 5 cut(s) 466, 640, 736, 829, 923
MflI RGATCY 1 cut(s) 561
MhlI GDGCHC 1 cut(s) 375
MluCI AATT 5 cut(s) 294, 487, 617, 685, 729
Mly113I GGCGCC 2 cut(s) 60, 192
MlyI GAGTC 3 cut(s) 54, 98, 923
MmeI TCCRAC 3 cut(s) 157, 342, 528
MseI TTAA 1 cut(s) 582
MspI CCGG 6 cut(s) 66, 108, 138, 385, 395, 404
MspR9I CCNGG 4 cut(s) 138, 386, 395, 405
MwoI GCNNNNNNNGC 6 cut(s) 29, 66, 75, 785, 1037, 1046
NarI GGCGCC 2 cut(s) 60, 192
NciI CCSGG 4 cut(s) 138, 386, 395, 405
NcoI CCATGG 1 cut(s) 205
NdeII GATC 5 cut(s) 258, 306, 550, 561, 1011
NlaIII CATG 4 cut(s) 209, 257, 418, 833
NlaIV GGNNCC 5 cut(s) 61, 193, 402, 464, 465
NmeAIII GCCGAG 1 cut(s) 68
NmuCI GTSAC 1 cut(s) 9
PagI TCATGA 1 cut(s) 829
PcsI WCGNNNNNNNCGW 2 cut(s) 81, 375
PflFI GACNNNGTC 1 cut(s) 7
PkrI GCNGC 4 cut(s) 31, 787, 994, 1009
Ple19I CGATCG 1 cut(s) 1014
PleI GAGTC 3 cut(s) 53, 98, 922
PluTI GGCGCC 2 cut(s) 63, 195
PpsI GAGTC 3 cut(s) 53, 98, 922
Ppu21I YACGTR 1 cut(s) 474
PpuMI RGGWCCY 1 cut(s) 463
Psp5II RGGWCCY 1 cut(s) 463
PspN4I GGNNCC 5 cut(s) 61, 193, 402, 464, 465
PspPI GGNCC 7 cut(s) 140, 382, 387, 463, 504, 602, 875
PspPPI RGGWCCY 1 cut(s) 463
PstI CTGCAG 1 cut(s) 790
PsuI RGATCY 1 cut(s) 561
PsyI GACNNNGTC 1 cut(s) 7
PvuI CGATCG 1 cut(s) 1014
RsaI GTAC 1 cut(s) 476
RsaNI GTAC 1 cut(s) 475
SalI GTCGAC 1 cut(s) 596
SaqAI TTAA 1 cut(s) 582
SatI GCNGC 4 cut(s) 30, 786, 993, 1008
Sau3AI GATC 5 cut(s) 258, 306, 550, 561, 1011
Sau96I GGNCC 7 cut(s) 140, 382, 387, 463, 504, 602, 875
SchI GAGTC 3 cut(s) 54, 98, 923
ScrFI CCNGG 4 cut(s) 138, 386, 395, 405
SduI GDGCHC 1 cut(s) 375
SfaNI GCATC 1 cut(s) 532
SfcI CTRYAG 2 cut(s) 333, 786
SfoI GGCGCC 2 cut(s) 61, 193
SgrDI CGTCGACG 1 cut(s) 596
SinI GGWCC 3 cut(s) 382, 463, 875
Sse9I AATT 5 cut(s) 294, 487, 617, 685, 729
SsiI CCGC 2 cut(s) 993, 1007
SspDI GGCGCC 2 cut(s) 59, 191
SspMI CTAG 2 cut(s) 314, 974
StyD4I CCNGG 4 cut(s) 136, 384, 393, 403
StyI CCWWGG 1 cut(s) 205
TaaI ACNGT 9 cut(s) 7, 268, 343, 546, 569, 580, 634, 717, 797
TaiI ACGT 3 cut(s) 126, 381, 476
TaqI TCGA 5 cut(s) 102, 261, 318, 597, 673
TasI AATT 5 cut(s) 294, 487, 617, 685, 729
TauI GCSGC 2 cut(s) 995, 1010
Tru1I TTAA 1 cut(s) 582
Tru9I TTAA 1 cut(s) 582
TscAI CASTG 1 cut(s) 720
TseFI GTSAC 1 cut(s) 9
TseI GCWGC 2 cut(s) 29, 785
Tsp45I GTSAC 1 cut(s) 9
TspDTI ATGAA 4 cut(s) 61, 641, 668, 829
TspRI CASTG 1 cut(s) 720
Tth111I GACNNNGTC 1 cut(s) 7
VpaK11BI GGWCC 3 cut(s) 382, 463, 875
XapI RAATTY 1 cut(s) 617
XmiI GTMKAC 2 cut(s) 597, 799
XspI CTAG 2 cut(s) 314, 974
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.