Prupe.1G305100_v2.0.a1

Leucoanthocyanidin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0016318
Physical Location & Seq
Reverse (-)
29872378 .. 29875418
3041 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G305100.1

Sequence Viewer

Length: 1050 bp
ATGACTGTGTCAACTTGTGTTTCTGCAGCCAAGAATGGCAGAATCCTCATTGTTGGTGCTACTGGTTTCATCGGGAGGTTTGTGGCTGAAGCTAGCCTTGATGCTGGCCAACCCACTTATGTCCTGATCAGGCCAGGCCCTCTTGACCCTTCTAAGGCTGACATCATCAAATCCCTCAAAGACAGAGGCGCTATAATCTTACATGGGGTGATTTCTGATAAGGCACTGATGGAGAAACTGCTAAGAGAGCATGAGATTGAGGTGGTAATATCCGCCGTGGGTGGTACAACAATATTGGACCAGATCATCCTGGTTGAGGCCATTCAAGCTGTTGGCACAATTAAGAGGTTTTTGCCGTCAGAGTTTGGGCACGATGTGGACAGGGCTGATCCGGTGGAACCAGGTCTCACCATGTATTTGGAGAAGCGCCAAGTCAGGCGGTGTGTTGAGAAATCTGGGGTGCCCTACACTTACATTTGCTGCAATTCCATTGCTTCTTGGCCCTACTTCGACAACAAGCATCCTTCTGAGGTTCTTCCACCGTTGGATCAGTTCCAAATCTACGGTGATGGCAGCGTTAAAGCCTACTTTATAGACGGCGCTGATATTGGAAAGTTCACAATGAAAACGGTGGACGATATCCGAACCATGAACAAAAATGTTCATTTTCGACCCCCTTCCAATCTATACGACATCAATGGTCTGGCATCTCTGTGGGAGAAGAAAATTGGCCGCACCCTTCCCAGAGTTACCATCACTGAAGATGACCTACTAACCATTGCTGCAGAGAACCGCATACCAGAAAGTATAGTGGCCTCATTCACCCACGATATCTTTATCAAAGGTTGCCAGGTGAATTTCCCCGTGGATGGCCCTCACGATGTGGAGATTGGGACCCTCTACCCGGAAGAATCTTTCAGGACCTTGGATGAGTGCTTCAATGACTTTCTTCTCAAATTGGAAGACGAGCAAGAGCTAGAGAAAAACAAAGTTTCCACCAAAACTACTGCAGTTGTTGAACCCAGGGCTGTCACTGCCACGTGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00941 ko01110 map00941 map01110
Pfam Domains
Protein Families
NmrA

Protein Analysis

350

Amino Acids

38.6

Weight (kDa)

5.22

Isoelectric Point (pI)

28.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016318)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g28110
malus_domestica MD13G1046900.v1.1 MD16G1048500.v1.1
prunus_persica Prupe.1G305100_v2.0.a1
pyrus_communis pycom13g04100 pycom16g04240
rosa_chinensis RchiOBHm_Chr4g0435881
rosa_laevigata RLG00000006553
rosa_multiflora Rmu_sc0003165.1_g000010
rosa_roxburghii Rroxscaffold_5G00377050
rosa_rugosa Rorug04G0290200
rosa_samantha Rh4BG353500 Rh4CG367900 Rh4DG347300
rosa_wichuraiana Rw4G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 460
AciI CCGC 4 cut(s) 273, 439, 733, 793
AclWI GGATC 2 cut(s) 383, 555
AcoI YGGCCR 2 cut(s) 106, 730
AcsI RAATTY 1 cut(s) 856
AcuI CTGAAG 2 cut(s) 108, 780
AcvI CACGTG 1 cut(s) 1041
AdeI CACNNNGTG 2 cut(s) 376, 883
AfaI GTAC 1 cut(s) 286
AfiI CCNNNNNNNGG 4 cut(s) 154, 316, 869, 904
AflIII ACRYGT 1 cut(s) 1040
AgsI TTSAA 3 cut(s) 326, 940, 1019
AjnI CCWGG 5 cut(s) 133, 309, 400, 849, 1022
AluBI AGCT 3 cut(s) 92, 329, 976
AluI AGCT 3 cut(s) 92, 329, 976
Alw26I GTCTC 1 cut(s) 410
AlwI GGATC 2 cut(s) 383, 555
AoxI GGCC 8 cut(s) 106, 131, 136, 318, 500, 730, 813, 871
ApeKI GCWGC 4 cut(s) 26, 480, 573, 782
ApoI RAATTY 1 cut(s) 856
AspLEI GCGC 3 cut(s) 191, 429, 602
AspS9I GGNCC 6 cut(s) 137, 298, 501, 872, 894, 921
AsuC2I CCSGG 1 cut(s) 905
AsuHPI GGTGA 5 cut(s) 220, 400, 578, 814, 865
AsuNHI GCTAGC 1 cut(s) 92
AvaII GGWCC 3 cut(s) 298, 894, 921
BaeGI GKGCMC 2 cut(s) 372, 465
BalI TGGCCA 1 cut(s) 108
BanI GGYRCC 1 cut(s) 460
BarI GAAGNNNNNNTAC 2 cut(s) 753, 785
BbrPI CACGTG 1 cut(s) 1041
BbsI GAAGAC 1 cut(s) 969
BbvI GCAGC 4 cut(s) 38, 467, 585, 769
BccI CCATC 4 cut(s) 223, 563, 761, 863
BceAI ACGGC 3 cut(s) 260, 340, 613
BciT130I CCWGG 5 cut(s) 135, 311, 402, 851, 1024
BclI TGATCA 1 cut(s) 126
BcnI CCSGG 1 cut(s) 905
BcoDI GTCTC 1 cut(s) 410
BfaI CTAG 2 cut(s) 93, 977
BfmI CTRYAG 3 cut(s) 24, 783, 1008
BfoI RGCGCY 3 cut(s) 192, 430, 603
BisI GCNGC 5 cut(s) 27, 481, 574, 733, 783
BlsI GCNGC 5 cut(s) 28, 482, 575, 734, 784
Bme1390I CCNGG 6 cut(s) 135, 311, 402, 851, 905, 1024
Bme18I GGWCC 3 cut(s) 298, 894, 921
BmgT120I GGNCC 6 cut(s) 137, 298, 501, 872, 894, 921
BmiI GGNNCC 4 cut(s) 399, 462, 895, 896
BmrFI CCNGG 6 cut(s) 135, 311, 402, 851, 905, 1024
BmsI GCATC 3 cut(s) 91, 529, 716
BmtI GCTAGC 1 cut(s) 96
BpiI GAAGAC 1 cut(s) 969
BpuMI CCSGG 1 cut(s) 905
BsaAI YACGTR 1 cut(s) 1041
BsaI GGTCTC 1 cut(s) 410
BsaJI CCNNGG 5 cut(s) 276, 864, 924, 1022, 1023
BsaWI WCCGGW 1 cut(s) 391
Bsc4I CCNNNNNNNGG 4 cut(s) 154, 316, 869, 904
Bse1I ACTGG 1 cut(s) 67
Bse3DI GCAATG 2 cut(s) 489, 777
BseBI CCWGG 5 cut(s) 135, 311, 402, 851, 1024
BseDI CCNNGG 5 cut(s) 276, 864, 924, 1022, 1023
BseGI GGATG 4 cut(s) 306, 520, 874, 934
BseLI CCNNNNNNNGG 4 cut(s) 154, 316, 869, 904
BseMI GCAATG 2 cut(s) 489, 777
BseMII CTCAG 1 cut(s) 519
BseNI ACTGG 1 cut(s) 67
BseSI GKGCMC 2 cut(s) 372, 465
BseXI GCAGC 4 cut(s) 38, 467, 585, 769
BshFI GGCC 8 cut(s) 108, 133, 138, 320, 502, 732, 815, 873
BshNI GGYRCC 1 cut(s) 460
BsiSI CCGG 2 cut(s) 392, 905
BslFI GGGAC 1 cut(s) 907
BslI CCNNNNNNNGG 4 cut(s) 154, 316, 869, 904
BsmAI GTCTC 1 cut(s) 410
BsmFI GGGAC 1 cut(s) 907
BsnI GGCC 8 cut(s) 108, 133, 138, 320, 502, 732, 815, 873
Bso31I GGTCTC 1 cut(s) 410
Bsp1286I GDGCHC 2 cut(s) 372, 465
Bsp143I GATC 4 cut(s) 126, 303, 388, 547
BspACI CCGC 4 cut(s) 273, 439, 733, 793
BspANI GGCC 8 cut(s) 108, 133, 138, 320, 502, 732, 815, 873
BspCNI CTCAG 1 cut(s) 520
BspLI GGNNCC 4 cut(s) 399, 462, 895, 896
BspMAI CTGCAG 3 cut(s) 28, 787, 1012
BspOI GCTAGC 1 cut(s) 96
BspPI GGATC 2 cut(s) 383, 555
BspT107I GGYRCC 1 cut(s) 460
BspTNI GGTCTC 1 cut(s) 410
BsrDI GCAATG 2 cut(s) 489, 777
BsrI ACTGG 1 cut(s) 67
BssECI CCNNGG 5 cut(s) 276, 864, 924, 1022, 1023
BssMI GATC 4 cut(s) 126, 303, 388, 547
BssT1I CCWWGG 1 cut(s) 924
Bst2UI CCWGG 5 cut(s) 135, 311, 402, 851, 1024
Bst4CI ACNGT 4 cut(s) 7, 543, 566, 631
BstBAI YACGTR 1 cut(s) 1041
BstC8I GCNNGC 2 cut(s) 94, 106
BstDEI CTNAG 3 cut(s) 153, 242, 528
BstDSI CCRYGG 2 cut(s) 276, 864
BstENI CCTNNNNNAGG 1 cut(s) 314
BstF5I GGATG 4 cut(s) 306, 520, 874, 934
BstH2I RGCGCY 3 cut(s) 192, 430, 603
BstHHI GCGC 3 cut(s) 191, 429, 602
BstKTI GATC 4 cut(s) 129, 306, 391, 550
BstMAI GTCTC 1 cut(s) 410
BstMBI GATC 4 cut(s) 126, 303, 388, 547
BstMWI GCNNNNNNNGC 4 cut(s) 247, 326, 1034, 1043
BstNI CCWGG 5 cut(s) 135, 311, 402, 851, 1024
BstSCI CCNGG 6 cut(s) 133, 309, 400, 849, 903, 1022
BstSFI CTRYAG 3 cut(s) 24, 783, 1008
BstSLI GKGCMC 2 cut(s) 372, 465
BstV1I GCAGC 4 cut(s) 38, 467, 585, 769
BstV2I GAAGAC 1 cut(s) 969
BstXI CCANNNNNNTGG 1 cut(s) 418
BsuRI GGCC 8 cut(s) 108, 133, 138, 320, 502, 732, 815, 873
BtgI CCRYGG 2 cut(s) 276, 864
BtsCI GGATG 4 cut(s) 306, 520, 874, 934
BtsI GCAGTG 1 cut(s) 1032
BtsIMutI CAGTG 3 cut(s) 224, 756, 1032
Cac8I GCNNGC 2 cut(s) 94, 106
CfoI GCGC 3 cut(s) 191, 429, 602
Cfr13I GGNCC 6 cut(s) 137, 298, 501, 872, 894, 921
CsiI ACCWGGT 1 cut(s) 400
Csp6I GTAC 1 cut(s) 285
CviAII CATG 4 cut(s) 203, 251, 412, 649
CviQI GTAC 1 cut(s) 285
DdeI CTNAG 3 cut(s) 153, 242, 528
DpnI GATC 4 cut(s) 128, 305, 390, 549
DpnII GATC 4 cut(s) 126, 303, 388, 547
DraIII CACNNNGTG 2 cut(s) 376, 883
EaeI YGGCCR 2 cut(s) 106, 730
EciI GGCGGA 1 cut(s) 262
Eco130I CCWWGG 1 cut(s) 924
Eco31I GGTCTC 1 cut(s) 410
Eco32I GATATC 2 cut(s) 640, 832
Eco47I GGWCC 3 cut(s) 298, 894, 921
Eco57I CTGAAG 2 cut(s) 108, 780
Eco72I CACGTG 1 cut(s) 1041
EcoNI CCTNNNNNAGG 1 cut(s) 314
EcoO109I RGGNCCY 3 cut(s) 137, 894, 921
EcoRII CCWGG 5 cut(s) 133, 309, 400, 849, 1022
EcoRV GATATC 2 cut(s) 640, 832
EcoT14I CCWWGG 1 cut(s) 924
ErhI CCWWGG 1 cut(s) 924
FaeI CATG 4 cut(s) 206, 254, 415, 652
FalI AAGNNNNNCTT 2 cut(s) 81, 113
FaqI GGGAC 1 cut(s) 907
FatI CATG 4 cut(s) 202, 250, 411, 648
FbaI TGATCA 1 cut(s) 126
Fnu4HI GCNGC 5 cut(s) 27, 481, 574, 733, 783
FokI GGATG 4 cut(s) 293, 507, 881, 941
Fsp4HI GCNGC 5 cut(s) 27, 481, 574, 733, 783
FspBI CTAG 2 cut(s) 93, 977
GlaI GCGC 3 cut(s) 190, 428, 601
GluI GCNGC 5 cut(s) 27, 481, 574, 733, 783
HaeII RGCGCY 3 cut(s) 192, 430, 603
HaeIII GGCC 8 cut(s) 108, 133, 138, 320, 502, 732, 815, 873
HapII CCGG 2 cut(s) 392, 905
HhaI GCGC 3 cut(s) 191, 429, 602
Hin1II CATG 4 cut(s) 206, 254, 415, 652
Hin6I GCGC 3 cut(s) 189, 427, 600
HinP1I GCGC 3 cut(s) 189, 427, 600
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HinfI GANTC 2 cut(s) 42, 911
HpaII CCGG 2 cut(s) 392, 905
HphI GGTGA 5 cut(s) 220, 400, 578, 814, 865
Hpy166II GTNNAC 4 cut(s) 12, 379, 618, 634
Hpy188I TCNGA 4 cut(s) 217, 361, 529, 644
Hpy188III TCNNGA 5 cut(s) 73, 124, 143, 878, 919
Hpy8I GTNNAC 4 cut(s) 12, 379, 618, 634
HpyAV CCTTC 4 cut(s) 159, 534, 687, 749
HpyCH4III ACNGT 4 cut(s) 7, 543, 566, 631
HpyCH4IV ACGT 1 cut(s) 1040
HpyCH4V TGCA 4 cut(s) 26, 483, 785, 1010
HpyF10VI GCNNNNNNNGC 4 cut(s) 247, 326, 1034, 1043
HpyF3I CTNAG 3 cut(s) 153, 242, 528
HpySE526I ACGT 1 cut(s) 1040
Hsp92II CATG 4 cut(s) 206, 254, 415, 652
HspAI GCGC 3 cut(s) 189, 427, 600
KflI GGGWCCC 1 cut(s) 894
Ksp22I TGATCA 1 cut(s) 126
Kzo9I GATC 4 cut(s) 126, 303, 388, 547
Lsp1109I GCAGC 4 cut(s) 38, 467, 585, 769
LweI GCATC 3 cut(s) 91, 529, 716
MabI ACCWGGT 1 cut(s) 400
MaeI CTAG 2 cut(s) 93, 977
MaeII ACGT 1 cut(s) 1040
MaeIII GTNAC 2 cut(s) 748, 1030
MalI GATC 4 cut(s) 128, 305, 390, 549
MboI GATC 4 cut(s) 126, 303, 388, 547
MboII GAAGA 6 cut(s) 527, 733, 773, 920, 941, 974
MhlI GDGCHC 2 cut(s) 372, 465
MlsI TGGCCA 1 cut(s) 108
MluCI AATT 5 cut(s) 339, 484, 726, 856, 956
MluNI TGGCCA 1 cut(s) 108
MmeI TCCRAC 1 cut(s) 525
Mox20I TGGCCA 1 cut(s) 108
MscI TGGCCA 1 cut(s) 108
MseI TTAA 2 cut(s) 342, 579
MslI CAYNNNNRTG 1 cut(s) 712
Msp20I TGGCCA 1 cut(s) 108
MspI CCGG 2 cut(s) 392, 905
MspR9I CCNGG 6 cut(s) 135, 311, 402, 851, 905, 1024
MvaI CCWGG 5 cut(s) 135, 311, 402, 851, 1024
MwoI GCNNNNNNNGC 4 cut(s) 247, 326, 1034, 1043
NciI CCSGG 1 cut(s) 905
NdeII GATC 4 cut(s) 126, 303, 388, 547
NheI GCTAGC 1 cut(s) 92
NlaIII CATG 4 cut(s) 206, 254, 415, 652
NlaIV GGNNCC 4 cut(s) 399, 462, 895, 896
NmuCI GTSAC 1 cut(s) 1030
PasI CCCWGGG 1 cut(s) 1023
PfeI GAWTC 2 cut(s) 42, 911
PflFI GACNNNGTC 1 cut(s) 7
PkrI GCNGC 5 cut(s) 28, 482, 575, 734, 784
PmaCI CACGTG 1 cut(s) 1041
PmlI CACGTG 1 cut(s) 1041
Ppu21I YACGTR 1 cut(s) 1041
PpuMI RGGWCCY 2 cut(s) 894, 921
Psp5II RGGWCCY 2 cut(s) 894, 921
Psp6I CCWGG 5 cut(s) 133, 309, 400, 849, 1022
PspCI CACGTG 1 cut(s) 1041
PspGI CCWGG 5 cut(s) 133, 309, 400, 849, 1022
PspN4I GGNNCC 4 cut(s) 399, 462, 895, 896
PspPI GGNCC 6 cut(s) 137, 298, 501, 872, 894, 921
PspPPI RGGWCCY 2 cut(s) 894, 921
PstI CTGCAG 3 cut(s) 28, 787, 1012
PsyI GACNNNGTC 1 cut(s) 7
RsaI GTAC 1 cut(s) 286
RsaNI GTAC 1 cut(s) 285
RseI CAYNNNNRTG 1 cut(s) 712
SaqAI TTAA 2 cut(s) 342, 579
SatI GCNGC 5 cut(s) 27, 481, 574, 733, 783
Sau3AI GATC 4 cut(s) 126, 303, 388, 547
Sau96I GGNCC 6 cut(s) 137, 298, 501, 872, 894, 921
ScrFI CCNGG 6 cut(s) 135, 311, 402, 851, 905, 1024
SduI GDGCHC 2 cut(s) 372, 465
SexAI ACCWGGT 1 cut(s) 400
SfaNI GCATC 3 cut(s) 91, 529, 716
SfcI CTRYAG 3 cut(s) 24, 783, 1008
SinI GGWCC 3 cut(s) 298, 894, 921
SmiMI CAYNNNNRTG 1 cut(s) 712
Sse9I AATT 5 cut(s) 339, 484, 726, 856, 956
SsiI CCGC 4 cut(s) 273, 439, 733, 793
SspI AATATT 1 cut(s) 294
SspMI CTAG 2 cut(s) 93, 977
StyD4I CCNGG 6 cut(s) 133, 309, 400, 849, 903, 1022
StyI CCWWGG 1 cut(s) 924
TaaI ACNGT 4 cut(s) 7, 543, 566, 631
TaiI ACGT 1 cut(s) 1043
TaqI TCGA 2 cut(s) 510, 670
TasI AATT 5 cut(s) 339, 484, 726, 856, 956
TauI GCSGC 1 cut(s) 735
TfiI GAWTC 2 cut(s) 42, 911
Tru1I TTAA 2 cut(s) 342, 579
Tru9I TTAA 2 cut(s) 342, 579
TscAI CASTG 3 cut(s) 231, 763, 1039
TseFI GTSAC 1 cut(s) 1030
TseI GCWGC 4 cut(s) 26, 480, 573, 782
Tsp45I GTSAC 1 cut(s) 1030
TspDTI ATGAA 4 cut(s) 58, 638, 653, 665
TspRI CASTG 3 cut(s) 231, 763, 1039
Tth111I GACNNNGTC 1 cut(s) 7
VpaK11BI GGWCC 3 cut(s) 298, 894, 921
XagI CCTNNNNNAGG 1 cut(s) 314
XapI RAATTY 1 cut(s) 856
XspI CTAG 2 cut(s) 93, 977
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.