pycom16g04240

Leucoanthocyanidin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0016318
Physical Location & Seq
Forward (+)
2647352 .. 2651458
4107 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g04240.3

Sequence Viewer

Length: 1059 bp
ATGACTGTTTCATCTTCTCTTTCCGTTGCCAAAAATGGCAGAGTCCTCATCGCCGGTGCCACCGGTTTCATCGGGAGGTTCGTAGCTGAAGCCAGCCTCGCAGCCGGTCAACCCACGTATGTTCTCGTCCGGCCCGGCCCCCTGCACCCTTCTAAGGCTGACACCGTCAAGTCCTTCAAAGACAAAGGCGCAATAATCTTACACGGGCTGATTTCTGATAAAACCCTAATGGAGGAAATGCTAAGAGAGCATGAAATCGAGATAGTAATATCAGCCGTGGGTGGTGCCACAATATTGGACCAGATTACCCTAGTCGACGCCATTGCGGCAGTTGGTACAGTTAAGAGATTTTTGCCGTCGGAGTTTGGACACGATGTGGACAGGGCTGATCCGGTGGAACCAGGGCTCACCATGTACTTGGAGAAACGCAAGGTTAGACGTTCCGTCGAGAAATCCGGGGTACCCTACACTTACATTTGCTGCAACTCGATTGCTTCTTGGCCCTACTTTGACAACACCCACCCTTCTGAGGTTCTGCCACCGTTGGATCGGTTCCAAATCTACGGTGATGGCACCGTCAAAGCCTACTTTGTTGACGGTACTGATATCGGCAAGTTCACAATGAAAACGGTGGACGACATCCGAGCAATCAACAAAAATGTTCATTTCCGACCGCCGAGCAATTTATACGACATCAATGGGCTTGCATCTCTGTGGGAGAAGAAAATTGGCCGGACCCTCCCTAGAGTCACCGTCACTGAAGATCACCTACTAGCCCTTGCTGCAGAGAACCGTATACCAGAAAGCATAGTGGCCTCGTTCACGCATGACATCTTTATCAAAGGATGTCAGGTTAATTTTGCGGTGGAAGGGCCTCGTGATGTGGAAGTGGGAACTCTCTACCCTGGAGATTCTTTCAGGACCTTGGATGAGTGCTTCAATGACTTTCTTCTCAAGTTGAAGGACAACCTAGAGCTACTGCAAGAGGAGGAGGATCAGAAAGTCTCCACCGAAAGCACCGTTGTGGAATCCAGGGCTGTGACTGCCACTTGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00941 ko01110 map00941 map01110
Pfam Domains
Protein Families
NmrA

Protein Analysis

353

Amino Acids

38.69

Weight (kDa)

5.38

Isoelectric Point (pI)

29.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016318)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g28110
malus_domestica MD13G1046900.v1.1 MD16G1048500.v1.1
prunus_persica Prupe.1G305100_v2.0.a1
pyrus_communis pycom13g04100 pycom16g04240
rosa_chinensis RchiOBHm_Chr4g0435881
rosa_laevigata RLG00000006553
rosa_multiflora Rmu_sc0003165.1_g000010
rosa_roxburghii Rroxscaffold_5G00377050
rosa_rugosa Rorug04G0290200
rosa_samantha Rh4BG353500 Rh4CG367900 Rh4DG347300
rosa_wichuraiana Rw4G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 460
AccB1I GGYRCC 4 cut(s) 56, 284, 460, 572
AccI GTMKAC 2 cut(s) 315, 796
AciI CCGC 3 cut(s) 326, 674, 863
AclWI GGATC 3 cut(s) 383, 555, 1002
AcoI YGGCCR 1 cut(s) 730
AcuI CTGAAG 2 cut(s) 108, 780
AcyI GRCGYC 1 cut(s) 318
AdeI CACNNNGTG 1 cut(s) 376
AfaI GTAC 4 cut(s) 337, 416, 462, 601
AfiI CCNNNNNNNGG 3 cut(s) 154, 232, 529
AgeI ACCGGT 1 cut(s) 62
AgsI TTSAA 3 cut(s) 178, 940, 961
AhdI GACNNNNNGTC 1 cut(s) 443
AjnI CCWGG 3 cut(s) 400, 904, 1031
AleI CACNNNNGTG 1 cut(s) 1022
AluBI AGCT 2 cut(s) 86, 976
AluI AGCT 2 cut(s) 86, 976
Alw26I GTCTC 1 cut(s) 1009
AlwI GGATC 3 cut(s) 383, 555, 1002
AoxI GGCC 6 cut(s) 131, 136, 500, 730, 813, 872
ApeKI GCWGC 3 cut(s) 101, 480, 782
AsiGI ACCGGT 1 cut(s) 62
Asp718I GGTACC 1 cut(s) 460
AspLEI GCGC 1 cut(s) 191
AspS9I GGNCC 7 cut(s) 132, 137, 298, 501, 735, 872, 921
AsuC2I CCSGG 2 cut(s) 135, 457
AsuHPI GGTGA 4 cut(s) 400, 578, 742, 758
AvaII GGWCC 3 cut(s) 298, 735, 921
BanI GGYRCC 4 cut(s) 56, 284, 460, 572
BanII GRGCYC 1 cut(s) 408
BarI GAAGNNNNNNTAC 2 cut(s) 753, 785
BauI CACGAG 1 cut(s) 876
BbvI GCAGC 3 cut(s) 113, 467, 769
BccI CCATC 1 cut(s) 563
BceAI ACGGC 2 cut(s) 260, 340
BcgI CGANNNNNNTGC 2 cut(s) 305, 339
BciT130I CCWGG 3 cut(s) 402, 906, 1033
BcnI CCSGG 2 cut(s) 135, 457
BcoDI GTCTC 1 cut(s) 1009
BfaI CTAG 4 cut(s) 311, 744, 773, 971
BfmI CTRYAG 1 cut(s) 783
BglI GCCNNNNNGGC 1 cut(s) 326
BisI GCNGC 4 cut(s) 102, 327, 481, 783
BlsI GCNGC 4 cut(s) 103, 328, 482, 784
Bme1390I CCNGG 5 cut(s) 135, 402, 457, 906, 1033
Bme18I GGWCC 3 cut(s) 298, 735, 921
BmeRI GACNNNNNGTC 1 cut(s) 443
BmgT120I GGNCC 7 cut(s) 132, 137, 298, 501, 735, 872, 921
BmiI GGNNCC 8 cut(s) 58, 139, 286, 399, 462, 554, 574, 737
BmrFI CCNGG 5 cut(s) 135, 402, 457, 906, 1033
BmsI GCATC 1 cut(s) 716
BpmI CTGGAG 1 cut(s) 927
BpuEI CTTGAG 1 cut(s) 938
BpuMI CCSGG 2 cut(s) 135, 457
BsaAI YACGTR 1 cut(s) 117
BsaHI GRCGYC 1 cut(s) 318
BsaJI CCNNGG 6 cut(s) 276, 401, 456, 904, 924, 1032
BsaWI WCCGGW 2 cut(s) 62, 391
Bsc4I CCNNNNNNNGG 3 cut(s) 154, 232, 529
Bse118I RCCGGY 3 cut(s) 53, 62, 104
Bse3DI GCAATG 1 cut(s) 321
BseBI CCWGG 3 cut(s) 402, 906, 1033
BseDI CCNNGG 6 cut(s) 276, 401, 456, 904, 924, 1032
BseGI GGATG 3 cut(s) 639, 851, 934
BseLI CCNNNNNNNGG 3 cut(s) 154, 232, 529
BseMI GCAATG 1 cut(s) 321
BseMII CTCAG 1 cut(s) 519
BseRI GAGGAG 2 cut(s) 1001, 1004
BseXI GCAGC 3 cut(s) 113, 467, 769
BsgI GTGCAG 1 cut(s) 128
Bsh1285I CGRYCG 1 cut(s) 674
BshFI GGCC 6 cut(s) 133, 138, 502, 732, 815, 874
BshNI GGYRCC 4 cut(s) 56, 284, 460, 572
BshTI ACCGGT 1 cut(s) 62
BsiEI CGRYCG 1 cut(s) 674
BsiSI CCGG 8 cut(s) 54, 63, 105, 130, 135, 392, 456, 733
BslI CCNNNNNNNGG 3 cut(s) 154, 232, 529
BsmAI GTCTC 1 cut(s) 1009
BsnI GGCC 6 cut(s) 133, 138, 502, 732, 815, 874
Bsp1286I GDGCHC 1 cut(s) 408
Bsp143I GATC 4 cut(s) 388, 547, 763, 994
BspACI CCGC 3 cut(s) 326, 674, 863
BspANI GGCC 6 cut(s) 133, 138, 502, 732, 815, 874
BspCNI CTCAG 1 cut(s) 520
BspLI GGNNCC 8 cut(s) 58, 139, 286, 399, 462, 554, 574, 737
BspMAI CTGCAG 1 cut(s) 787
BspPI GGATC 3 cut(s) 383, 555, 1002
BspT107I GGYRCC 4 cut(s) 56, 284, 460, 572
BsrDI GCAATG 1 cut(s) 321
BsrFI RCCGGY 3 cut(s) 53, 62, 104
BssAI RCCGGY 3 cut(s) 53, 62, 104
BssECI CCNNGG 6 cut(s) 276, 401, 456, 904, 924, 1032
BssMI GATC 4 cut(s) 388, 547, 763, 994
BssNAI GTATAC 1 cut(s) 797
BssNI GRCGYC 1 cut(s) 318
BssSI CACGAG 1 cut(s) 876
BssT1I CCWWGG 1 cut(s) 924
Bst1107I GTATAC 1 cut(s) 797
Bst2BI CACGAG 1 cut(s) 876
Bst2UI CCWGG 3 cut(s) 402, 906, 1033
BstACI GRCGYC 1 cut(s) 318
BstBAI YACGTR 1 cut(s) 117
BstC8I GCNNGC 2 cut(s) 94, 705
BstDEI CTNAG 3 cut(s) 153, 242, 528
BstDSI CCRYGG 1 cut(s) 276
BstENI CCTNNNNNAGG 1 cut(s) 230
BstF5I GGATG 3 cut(s) 639, 851, 934
BstHHI GCGC 1 cut(s) 191
BstKTI GATC 4 cut(s) 391, 550, 766, 997
BstMAI GTCTC 1 cut(s) 1009
BstMBI GATC 4 cut(s) 388, 547, 763, 994
BstMCI CGRYCG 1 cut(s) 674
BstMWI GCNNNNNNNGC 6 cut(s) 98, 247, 326, 782, 1043, 1052
BstNI CCWGG 3 cut(s) 402, 906, 1033
BstSCI CCNGG 5 cut(s) 133, 400, 455, 904, 1031
BstSFI CTRYAG 1 cut(s) 783
BstV1I GCAGC 3 cut(s) 113, 467, 769
BstXI CCANNNNNNTGG 2 cut(s) 295, 418
BstZ17I GTATAC 1 cut(s) 797
BsuRI GGCC 6 cut(s) 133, 138, 502, 732, 815, 874
BtgI CCRYGG 1 cut(s) 276
BtgZI GCGATG 1 cut(s) 34
BtsCI GGATG 3 cut(s) 639, 851, 934
BtsIMutI CAGTG 1 cut(s) 756
Cac8I GCNNGC 2 cut(s) 94, 705
CfoI GCGC 1 cut(s) 191
Cfr10I RCCGGY 3 cut(s) 53, 62, 104
Cfr13I GGNCC 7 cut(s) 132, 137, 298, 501, 735, 872, 921
CseI GACGC 1 cut(s) 326
Csp6I GTAC 4 cut(s) 336, 415, 461, 600
CspAI ACCGGT 1 cut(s) 62
CviAII CATG 3 cut(s) 251, 412, 827
CviQI GTAC 4 cut(s) 336, 415, 461, 600
DdeI CTNAG 3 cut(s) 153, 242, 528
DpnI GATC 4 cut(s) 390, 549, 765, 996
DpnII GATC 4 cut(s) 388, 547, 763, 994
DraIII CACNNNGTG 1 cut(s) 376
DriI GACNNNNNGTC 1 cut(s) 443
EaeI YGGCCR 1 cut(s) 730
Eam1105I GACNNNNNGTC 1 cut(s) 443
Eco130I CCWWGG 1 cut(s) 924
Eco24I GRGCYC 1 cut(s) 408
Eco32I GATATC 1 cut(s) 607
Eco47I GGWCC 3 cut(s) 298, 735, 921
Eco57I CTGAAG 2 cut(s) 108, 780
EcoNI CCTNNNNNAGG 1 cut(s) 230
EcoO109I RGGNCCY 2 cut(s) 872, 921
EcoRII CCWGG 3 cut(s) 400, 904, 1031
EcoRV GATATC 1 cut(s) 607
EcoT14I CCWWGG 1 cut(s) 924
EcoT38I GRGCYC 1 cut(s) 408
ErhI CCWWGG 1 cut(s) 924
FaeI CATG 3 cut(s) 254, 415, 830
FaiI YATR 7 cut(s) 120, 252, 413, 688, 797, 809, 828
FatI CATG 3 cut(s) 250, 411, 826
FblI GTMKAC 2 cut(s) 315, 796
Fnu4HI GCNGC 4 cut(s) 102, 327, 481, 783
FokI GGATG 3 cut(s) 626, 858, 941
FriOI GRGCYC 1 cut(s) 408
Fsp4HI GCNGC 4 cut(s) 102, 327, 481, 783
FspBI CTAG 4 cut(s) 311, 744, 773, 971
GlaI GCGC 1 cut(s) 190
GluI GCNGC 4 cut(s) 102, 327, 481, 783
GsuI CTGGAG 1 cut(s) 927
HaeIII GGCC 6 cut(s) 133, 138, 502, 732, 815, 874
HapII CCGG 8 cut(s) 54, 63, 105, 130, 135, 392, 456, 733
HgaI GACGC 1 cut(s) 326
HhaI GCGC 1 cut(s) 191
Hin1I GRCGYC 1 cut(s) 318
Hin1II CATG 3 cut(s) 254, 415, 830
Hin6I GCGC 1 cut(s) 189
HinP1I GCGC 1 cut(s) 189
HincII GTYRAC 3 cut(s) 110, 316, 595
HindII GTYRAC 3 cut(s) 110, 316, 595
HinfI GANTC 4 cut(s) 42, 747, 911, 1028
HpaII CCGG 8 cut(s) 54, 63, 105, 130, 135, 392, 456, 733
HphI GGTGA 4 cut(s) 400, 578, 742, 758
Hpy166II GTNNAC 8 cut(s) 110, 316, 379, 595, 618, 634, 797, 822
Hpy188I TCNGA 6 cut(s) 217, 361, 529, 644, 671, 999
Hpy188III TCNNGA 5 cut(s) 73, 259, 448, 878, 919
Hpy8I GTNNAC 8 cut(s) 110, 316, 379, 595, 618, 634, 797, 822
Hpy99I CGWCG 3 cut(s) 320, 361, 449
HpyAV CCTTC 5 cut(s) 159, 184, 534, 863, 955
HpyCH4IV ACGT 2 cut(s) 116, 439
HpyCH4V TGCA 5 cut(s) 145, 483, 707, 785, 982
HpyF10VI GCNNNNNNNGC 6 cut(s) 98, 247, 326, 782, 1043, 1052
HpyF3I CTNAG 3 cut(s) 153, 242, 528
HpySE526I ACGT 2 cut(s) 116, 439
Hsp92I GRCGYC 1 cut(s) 318
Hsp92II CATG 3 cut(s) 254, 415, 830
HspAI GCGC 1 cut(s) 189
KpnI GGTACC 1 cut(s) 464
Kzo9I GATC 4 cut(s) 388, 547, 763, 994
Lsp1109I GCAGC 3 cut(s) 113, 467, 769
LweI GCATC 1 cut(s) 716
MaeI CTAG 4 cut(s) 311, 744, 773, 971
MaeII ACGT 2 cut(s) 116, 439
MaeIII GTNAC 3 cut(s) 748, 754, 1039
MalI GATC 4 cut(s) 390, 549, 765, 996
MboI GATC 4 cut(s) 388, 547, 763, 994
MboII GAAGA 4 cut(s) 6, 733, 773, 941
MhlI GDGCHC 1 cut(s) 408
MluCI AATT 3 cut(s) 682, 726, 856
MlyI GAGTC 2 cut(s) 51, 756
MmeI TCCRAC 3 cut(s) 339, 525, 694
MseI TTAA 2 cut(s) 342, 855
MslI CAYNNNNRTG 2 cut(s) 712, 1022
MspI CCGG 8 cut(s) 54, 63, 105, 130, 135, 392, 456, 733
MspR9I CCNGG 5 cut(s) 135, 402, 457, 906, 1033
MvaI CCWGG 3 cut(s) 402, 906, 1033
MwoI GCNNNNNNNGC 6 cut(s) 98, 247, 326, 782, 1043, 1052
NciI CCSGG 2 cut(s) 135, 457
NdeII GATC 4 cut(s) 388, 547, 763, 994
NlaIII CATG 3 cut(s) 254, 415, 830
NlaIV GGNNCC 8 cut(s) 58, 139, 286, 399, 462, 554, 574, 737
NmeAIII GCCGAG 1 cut(s) 702
NmuCI GTSAC 3 cut(s) 748, 754, 1039
OliI CACNNNNGTG 1 cut(s) 1022
PcsI WCGNNNNNNNCGW 1 cut(s) 78
PfeI GAWTC 2 cut(s) 911, 1028
PflFI GACNNNGTC 1 cut(s) 164
PinAI ACCGGT 1 cut(s) 62
PkrI GCNGC 4 cut(s) 103, 328, 482, 784
PleI GAGTC 2 cut(s) 50, 755
PpsI GAGTC 2 cut(s) 50, 755
Ppu21I YACGTR 1 cut(s) 117
PpuMI RGGWCCY 1 cut(s) 921
Psp5II RGGWCCY 1 cut(s) 921
Psp6I CCWGG 3 cut(s) 400, 904, 1031
PspGI CCWGG 3 cut(s) 400, 904, 1031
PspN4I GGNNCC 8 cut(s) 58, 139, 286, 399, 462, 554, 574, 737
PspPI GGNCC 7 cut(s) 132, 137, 298, 501, 735, 872, 921
PspPPI RGGWCCY 1 cut(s) 921
PstI CTGCAG 1 cut(s) 787
PsyI GACNNNGTC 1 cut(s) 164
RsaI GTAC 4 cut(s) 337, 416, 462, 601
RsaNI GTAC 4 cut(s) 336, 415, 461, 600
RseI CAYNNNNRTG 2 cut(s) 712, 1022
SalI GTCGAC 1 cut(s) 314
SaqAI TTAA 2 cut(s) 342, 855
SatI GCNGC 4 cut(s) 102, 327, 481, 783
Sau3AI GATC 4 cut(s) 388, 547, 763, 994
Sau96I GGNCC 7 cut(s) 132, 137, 298, 501, 735, 872, 921
SchI GAGTC 2 cut(s) 51, 756
ScrFI CCNGG 5 cut(s) 135, 402, 457, 906, 1033
SduI GDGCHC 1 cut(s) 408
SfaNI GCATC 1 cut(s) 716
SfcI CTRYAG 1 cut(s) 783
SgrAI CRCCGGYG 1 cut(s) 53
SinI GGWCC 3 cut(s) 298, 735, 921
SmiMI CAYNNNNRTG 2 cut(s) 712, 1022
SmlI CTYRAG 1 cut(s) 953
SmoI CTYRAG 1 cut(s) 953
Sse9I AATT 3 cut(s) 682, 726, 856
SsiI CCGC 3 cut(s) 326, 674, 863
SspI AATATT 1 cut(s) 294
SspMI CTAG 4 cut(s) 311, 744, 773, 971
StyD4I CCNGG 5 cut(s) 133, 400, 455, 904, 1031
StyI CCWWGG 1 cut(s) 924
TaiI ACGT 2 cut(s) 119, 442
TaqI TCGA 4 cut(s) 258, 315, 447, 488
TasI AATT 3 cut(s) 682, 726, 856
TatI WGTACW 1 cut(s) 414
TauI GCSGC 1 cut(s) 329
TfiI GAWTC 2 cut(s) 911, 1028
Tru1I TTAA 2 cut(s) 342, 855
Tru9I TTAA 2 cut(s) 342, 855
TscAI CASTG 1 cut(s) 763
TseFI GTSAC 3 cut(s) 748, 754, 1039
TseI GCWGC 3 cut(s) 101, 480, 782
Tsp45I GTSAC 3 cut(s) 748, 754, 1039
TspDTI ATGAA 4 cut(s) 58, 267, 638, 653
TspGWI ACGGA 2 cut(s) 13, 433
TspRI CASTG 1 cut(s) 763
Tth111I GACNNNGTC 1 cut(s) 164
VpaK11BI GGWCC 3 cut(s) 298, 735, 921
XagI CCTNNNNNAGG 1 cut(s) 230
XmiI GTMKAC 2 cut(s) 315, 796
XspI CTAG 4 cut(s) 311, 744, 773, 971
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.