RchiOBHm_Chr4g0435881

Leucoanthocyanidin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0016318
Physical Location & Seq
Forward (+)
59295549 .. 59298337
2789 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40427

Sequence Viewer

Length: 1056 bp
ATGACGGTGTCACCTTCTATTGCCTCTGCTGCCAAGAGTGGCCGAGTCCTCATAATCGGCGCCACCGGCTTCATCGGCAAGTTCGTCGCCGAAGCCAGCCTAGACTCAGGCCTGCCTACTTACGTCCTCGTCCGACCCGGCCCGTCTCGCCCTCCCAAGTCCGACATCATCATCAAGTCGTTCAAAGACAGAGGCGGCATCATCCTGCATGGAGTGATGAGTGATAGGCCATTGATGGAGAAGCTGCTGAGAGAGCATGAGATCGACATAATCATATCAGCCGTGGGTGGTGCAACAATTTTGGACCAGATTACCCTGATAGAAGCCATCGCTGCAGTCGGAACGGTCAAGAGGTTTCTGCCGTCGGAGTTCGGGCACGATGTGGACCGGGCCGACCCGGTGGAACCGGGTCTGACGATGTACTTGGAGAAGCGCAAGGTGAGGCGTGCGATTGAGAAGACTGGAGTCCCTTACACCTACATTTGTTGCAATTCTATTGCTTCTTGGCCTTACTACGACAACAAGCATCCTTCAGAGGTTGTTCCGCCGTTGGATCAGTTCCAGATCTACGGTGACGGTACGGTCAAAGCCTACTTCGTAGACGGTCCTGATATTGGAAAGTTCACCATGAAGACGGTGGACGACATCCGAGCCATAAACAAAAATGTTCACTTTCGACCCTCAAGCAATCTGTATGATATCAACGGTCTTGCTTCTTTGTGGGAGAAGAAAATTGGTCGGACCCTCCCGAGAGTTACTGTAACTGAACACGACCTATTGTCAATGGCTGCAGAGAACCGTATACCAGAAAGTATTGTAGCCTCATTCACTCATGATATCTTTATCAAAGGCTGTCAAACCAATTTCCCCATTGAAGGTCCTAATGATATTGATGTGGGCACTCTATATCCTGAGGAATCTTTTAGGACCTTGGATGAGTGCTTCAATGACTTTCTTGTCAAAGTTGGGGGGACGCTAGAGACTGATAAAATTGCCACCAAGAACACGGCGGCGGTTGGAGTTGAACCTATGGCAATCACTGCAACTTGTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00941 ko01110 map00941 map01110
Pfam Domains
Protein Families
NmrA

Protein Analysis

351

Amino Acids

38.39

Weight (kDa)

5.72

Isoelectric Point (pI)

32.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 14 - 313 1.7e-52 NmrA-like family
Epimerase PF01370 16 - 108 5.2e-06 NAD dependent epimerase/dehydratase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016318)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g28110
malus_domestica MD13G1046900.v1.1 MD16G1048500.v1.1
prunus_persica Prupe.1G305100_v2.0.a1
pyrus_communis pycom13g04100 pycom16g04240
rosa_chinensis RchiOBHm_Chr4g0435881
rosa_laevigata RLG00000006553
rosa_multiflora Rmu_sc0003165.1_g000010
rosa_roxburghii Rroxscaffold_5G00377050
rosa_rugosa Rorug04G0290200
rosa_samantha Rh4BG353500 Rh4CG367900 Rh4DG347300
rosa_wichuraiana Rw4G030100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 581, 956
AccB1I GGYRCC 1 cut(s) 59
AccI GTMKAC 2 cut(s) 600, 802
AciI CCGC 4 cut(s) 195, 545, 1010, 1013
AclWI GGATC 1 cut(s) 561
AcoI YGGCCR 1 cut(s) 40
AcuI CTGAAG 1 cut(s) 516
AcyI GRCGYC 1 cut(s) 60
AdeI CACNNNGTG 1 cut(s) 382
AfaI GTAC 2 cut(s) 422, 580
AfiI CCNNNNNNNGG 2 cut(s) 614, 875
AgsI TTSAA 4 cut(s) 184, 875, 946, 1025
AhdI GACNNNNNGTC 1 cut(s) 778
AluBI AGCT 1 cut(s) 244
AluI AGCT 1 cut(s) 244
Alw26I GTCTC 2 cut(s) 150, 974
AlwI GGATC 1 cut(s) 561
Ama87I CYCGRG 1 cut(s) 748
AoxI GGCC 6 cut(s) 40, 109, 139, 227, 390, 506
ApeKI GCWGC 4 cut(s) 29, 244, 332, 788
AspLEI GCGC 2 cut(s) 62, 435
AspS9I GGNCC 8 cut(s) 140, 304, 385, 390, 605, 741, 878, 927
AsuC2I CCSGG 4 cut(s) 138, 389, 398, 408
AsuHPI GGTGA 4 cut(s) 3, 451, 584, 616
AvaI CYCGRG 1 cut(s) 748
AvaII GGWCC 6 cut(s) 304, 385, 605, 741, 878, 927
AxyI CCTNAGG 1 cut(s) 912
BaeGI GKGCMC 2 cut(s) 378, 902
BanI GGYRCC 1 cut(s) 59
BbsI GAAGAC 2 cut(s) 464, 638
BbvI GCAGC 4 cut(s) 16, 231, 319, 775
BccI CCATC 2 cut(s) 229, 335
BceAI ACGGC 4 cut(s) 266, 346, 532, 1023
BcgI CGANNNNNNTGC 2 cut(s) 67, 101
BcnI CCSGG 4 cut(s) 138, 389, 398, 408
BcoDI GTCTC 2 cut(s) 150, 974
BfaI CTAG 2 cut(s) 101, 977
BfmI CTRYAG 2 cut(s) 333, 789
BfoI RGCGCY 1 cut(s) 63
BglII AGATCT 1 cut(s) 564
BisI GCNGC 6 cut(s) 30, 196, 245, 333, 789, 1011
BlsI GCNGC 6 cut(s) 31, 197, 246, 334, 790, 1012
Bme1390I CCNGG 4 cut(s) 138, 389, 398, 408
Bme18I GGWCC 6 cut(s) 304, 385, 605, 741, 878, 927
BmeRI GACNNNNNGTC 1 cut(s) 778
BmeT110I CYCGRG 1 cut(s) 748
BmgT120I GGNCC 8 cut(s) 140, 304, 385, 390, 605, 741, 878, 927
BmiI GGNNCC 3 cut(s) 61, 405, 743
BmrFI CCNGG 4 cut(s) 138, 389, 398, 408
BmsI GCATC 2 cut(s) 207, 535
BoxI GACNNNNGTC 1 cut(s) 464
BpiI GAAGAC 2 cut(s) 464, 638
BpmI CTGGAG 1 cut(s) 483
BpuEI CTTGAG 1 cut(s) 667
BpuMI CCSGG 4 cut(s) 138, 389, 398, 408
BsaHI GRCGYC 1 cut(s) 60
BsaJI CCNNGG 2 cut(s) 282, 930
Bsc4I CCNNNNNNNGG 2 cut(s) 614, 875
Bse118I RCCGGY 1 cut(s) 65
Bse1I ACTGG 1 cut(s) 466
Bse21I CCTNAGG 1 cut(s) 912
BseDI CCNNGG 2 cut(s) 282, 930
BseGI GGATG 4 cut(s) 201, 526, 645, 940
BseLI CCNNNNNNNGG 2 cut(s) 614, 875
BseMII CTCAG 3 cut(s) 120, 239, 903
BseNI ACTGG 1 cut(s) 466
BseSI GKGCMC 2 cut(s) 378, 902
BseXI GCAGC 4 cut(s) 16, 231, 319, 775
BshFI GGCC 6 cut(s) 42, 111, 141, 229, 392, 508
BshNI GGYRCC 1 cut(s) 59
BsiHKCI CYCGRG 1 cut(s) 748
BsiSI CCGG 5 cut(s) 66, 138, 388, 398, 407
BslFI GGGAC 2 cut(s) 452, 985
BslI CCNNNNNNNGG 2 cut(s) 614, 875
BsmAI GTCTC 2 cut(s) 150, 974
BsmBI CGTCTC 1 cut(s) 150
BsmFI GGGAC 2 cut(s) 452, 985
BsnI GGCC 6 cut(s) 42, 111, 141, 229, 392, 508
BsoBI CYCGRG 1 cut(s) 748
Bsp1286I GDGCHC 2 cut(s) 378, 902
Bsp143I GATC 3 cut(s) 261, 553, 564
BspACI CCGC 4 cut(s) 195, 545, 1010, 1013
BspANI GGCC 6 cut(s) 42, 111, 141, 229, 392, 508
BspCNI CTCAG 3 cut(s) 119, 240, 904
BspHI TCATGA 1 cut(s) 832
BspLI GGNNCC 3 cut(s) 61, 405, 743
BspMAI CTGCAG 2 cut(s) 337, 793
BspPI GGATC 1 cut(s) 561
BspT107I GGYRCC 1 cut(s) 59
BsrFI RCCGGY 1 cut(s) 65
BsrI ACTGG 1 cut(s) 466
BssAI RCCGGY 1 cut(s) 65
BssECI CCNNGG 2 cut(s) 282, 930
BssMI GATC 3 cut(s) 261, 553, 564
BssNAI GTATAC 1 cut(s) 803
BssNI GRCGYC 1 cut(s) 60
BssT1I CCWWGG 1 cut(s) 930
Bst1107I GTATAC 1 cut(s) 803
BstACI GRCGYC 1 cut(s) 60
BstAPI GCANNNNNTGC 2 cut(s) 1040, 1049
BstC8I GCNNGC 3 cut(s) 97, 113, 447
BstDEI CTNAG 3 cut(s) 106, 248, 912
BstDSI CCRYGG 1 cut(s) 282
BstF5I GGATG 4 cut(s) 201, 526, 645, 940
BstH2I RGCGCY 1 cut(s) 63
BstHHI GCGC 2 cut(s) 62, 435
BstKTI GATC 3 cut(s) 264, 556, 567
BstMAI GTCTC 2 cut(s) 150, 974
BstMBI GATC 3 cut(s) 261, 553, 564
BstMWI GCNNNNNNNGC 8 cut(s) 29, 66, 75, 147, 253, 332, 1040, 1049
BstPAI GACNNNNGTC 1 cut(s) 464
BstSCI CCNGG 4 cut(s) 136, 387, 396, 406
BstSFI CTRYAG 2 cut(s) 333, 789
BstSLI GKGCMC 2 cut(s) 378, 902
BstV1I GCAGC 4 cut(s) 16, 231, 319, 775
BstV2I GAAGAC 2 cut(s) 464, 638
BstX2I RGATCY 1 cut(s) 564
BstYI RGATCY 1 cut(s) 564
BstZ17I GTATAC 1 cut(s) 803
Bsu36I CCTNAGG 1 cut(s) 912
BsuRI GGCC 6 cut(s) 42, 111, 141, 229, 392, 508
BtgI CCRYGG 1 cut(s) 282
BtgZI GCGATG 1 cut(s) 313
BtsCI GGATG 4 cut(s) 201, 526, 645, 940
BtsI GCAGTG 1 cut(s) 1038
BtsIMutI CAGTG 1 cut(s) 1038
Cac8I GCNNGC 3 cut(s) 97, 113, 447
CciI TCATGA 1 cut(s) 832
CfoI GCGC 2 cut(s) 62, 435
Cfr10I RCCGGY 1 cut(s) 65
Cfr13I GGNCC 8 cut(s) 140, 304, 385, 390, 605, 741, 878, 927
CseI GACGC 1 cut(s) 982
Csp6I GTAC 2 cut(s) 421, 579
CviAII CATG 4 cut(s) 209, 257, 628, 833
CviQI GTAC 2 cut(s) 421, 579
DdeI CTNAG 3 cut(s) 106, 248, 912
DinI GGCGCC 1 cut(s) 61
DpnI GATC 3 cut(s) 263, 555, 566
DpnII GATC 3 cut(s) 261, 553, 564
DraIII CACNNNGTG 1 cut(s) 382
DrdI GACNNNNNNGTC 2 cut(s) 581, 956
DriI GACNNNNNGTC 1 cut(s) 778
DseDI GACNNNNNNGTC 2 cut(s) 581, 956
EaeI YGGCCR 1 cut(s) 40
Eam1105I GACNNNNNGTC 1 cut(s) 778
EciI GGCGGA 1 cut(s) 534
Eco130I CCWWGG 1 cut(s) 930
Eco147I AGGCCT 1 cut(s) 111
Eco32I GATATC 2 cut(s) 700, 838
Eco47I GGWCC 6 cut(s) 304, 385, 605, 741, 878, 927
Eco57I CTGAAG 1 cut(s) 516
Eco81I CCTNAGG 1 cut(s) 912
Eco88I CYCGRG 1 cut(s) 748
EcoO109I RGGNCCY 2 cut(s) 878, 927
EcoRV GATATC 2 cut(s) 700, 838
EcoT14I CCWWGG 1 cut(s) 930
EgeI GGCGCC 1 cut(s) 61
EheI GGCGCC 1 cut(s) 61
ErhI CCWWGG 1 cut(s) 930
Esp3I CGTCTC 1 cut(s) 150
FaeI CATG 4 cut(s) 212, 260, 631, 836
FaqI GGGAC 2 cut(s) 452, 985
FatI CATG 4 cut(s) 208, 256, 627, 832
FblI GTMKAC 2 cut(s) 600, 802
Fnu4HI GCNGC 6 cut(s) 30, 196, 245, 333, 789, 1011
FokI GGATG 4 cut(s) 188, 513, 632, 947
Fsp4HI GCNGC 6 cut(s) 30, 196, 245, 333, 789, 1011
FspBI CTAG 2 cut(s) 101, 977
GlaI GCGC 2 cut(s) 61, 434
GluI GCNGC 6 cut(s) 30, 196, 245, 333, 789, 1011
GsuI CTGGAG 1 cut(s) 483
HaeII RGCGCY 1 cut(s) 63
HaeIII GGCC 6 cut(s) 42, 111, 141, 229, 392, 508
HapII CCGG 5 cut(s) 66, 138, 388, 398, 407
HgaI GACGC 1 cut(s) 982
HhaI GCGC 2 cut(s) 62, 435
Hin1I GRCGYC 1 cut(s) 60
Hin1II CATG 4 cut(s) 212, 260, 631, 836
Hin6I GCGC 2 cut(s) 60, 433
HinP1I GCGC 2 cut(s) 60, 433
HinfI GANTC 4 cut(s) 45, 104, 465, 917
HpaII CCGG 5 cut(s) 66, 138, 388, 398, 407
HphI GGTGA 4 cut(s) 3, 451, 584, 616
Hpy166II GTNNAC 6 cut(s) 385, 601, 624, 640, 670, 803
Hpy188I TCNGA 8 cut(s) 134, 163, 341, 367, 414, 535, 650, 741
Hpy188III TCNNGA 6 cut(s) 349, 562, 608, 748, 833, 911
Hpy8I GTNNAC 6 cut(s) 385, 601, 624, 640, 670, 803
Hpy99I CGWCG 2 cut(s) 89, 367
HpyAV CCTTC 3 cut(s) 24, 540, 869
HpyCH4IV ACGT 1 cut(s) 123
HpyCH4V TGCA 6 cut(s) 208, 293, 335, 489, 791, 1043
HpyF10VI GCNNNNNNNGC 8 cut(s) 29, 66, 75, 147, 253, 332, 1040, 1049
HpyF3I CTNAG 3 cut(s) 106, 248, 912
HpySE526I ACGT 1 cut(s) 123
Hsp92I GRCGYC 1 cut(s) 60
Hsp92II CATG 4 cut(s) 212, 260, 631, 836
HspAI GCGC 2 cut(s) 60, 433
KasI GGCGCC 1 cut(s) 59
Kzo9I GATC 3 cut(s) 261, 553, 564
Lsp1109I GCAGC 4 cut(s) 16, 231, 319, 775
LweI GCATC 2 cut(s) 207, 535
MaeI CTAG 2 cut(s) 101, 977
MaeII ACGT 1 cut(s) 123
MaeIII GTNAC 4 cut(s) 9, 572, 754, 760
MalI GATC 3 cut(s) 263, 555, 566
MboI GATC 3 cut(s) 261, 553, 564
MboII GAAGA 3 cut(s) 469, 643, 739
MflI RGATCY 1 cut(s) 564
MhlI GDGCHC 2 cut(s) 378, 902
MluCI AATT 5 cut(s) 297, 490, 732, 862, 990
Mly113I GGCGCC 1 cut(s) 60
MlyI GAGTC 3 cut(s) 54, 98, 474
MmeI TCCRAC 7 cut(s) 157, 186, 319, 345, 531, 719, 997
MspI CCGG 5 cut(s) 66, 138, 388, 398, 407
MspR9I CCNGG 4 cut(s) 138, 389, 398, 408
MwoI GCNNNNNNNGC 8 cut(s) 29, 66, 75, 147, 253, 332, 1040, 1049
NarI GGCGCC 1 cut(s) 60
NciI CCSGG 4 cut(s) 138, 389, 398, 408
NdeII GATC 3 cut(s) 261, 553, 564
NlaIII CATG 4 cut(s) 212, 260, 631, 836
NlaIV GGNNCC 3 cut(s) 61, 405, 743
NmeAIII GCCGAG 1 cut(s) 68
NmuCI GTSAC 2 cut(s) 9, 572
PagI TCATGA 1 cut(s) 832
PceI AGGCCT 1 cut(s) 111
PcsI WCGNNNNNNNCGW 1 cut(s) 81
PfeI GAWTC 1 cut(s) 917
PflFI GACNNNGTC 1 cut(s) 7
PkrI GCNGC 6 cut(s) 31, 197, 246, 334, 790, 1012
PleI GAGTC 3 cut(s) 53, 98, 473
PluTI GGCGCC 1 cut(s) 63
PpsI GAGTC 3 cut(s) 53, 98, 473
PpuMI RGGWCCY 2 cut(s) 878, 927
PshAI GACNNNNGTC 1 cut(s) 464
Psp5II RGGWCCY 2 cut(s) 878, 927
PspN4I GGNNCC 3 cut(s) 61, 405, 743
PspPI GGNCC 8 cut(s) 140, 304, 385, 390, 605, 741, 878, 927
PspPPI RGGWCCY 2 cut(s) 878, 927
PstI CTGCAG 2 cut(s) 337, 793
PsuI RGATCY 1 cut(s) 564
PsyI GACNNNGTC 1 cut(s) 7
RsaI GTAC 2 cut(s) 422, 580
RsaNI GTAC 2 cut(s) 421, 579
SatI GCNGC 6 cut(s) 30, 196, 245, 333, 789, 1011
Sau3AI GATC 3 cut(s) 261, 553, 564
Sau96I GGNCC 8 cut(s) 140, 304, 385, 390, 605, 741, 878, 927
SchI GAGTC 3 cut(s) 54, 98, 474
ScrFI CCNGG 4 cut(s) 138, 389, 398, 408
SduI GDGCHC 2 cut(s) 378, 902
SfaNI GCATC 2 cut(s) 207, 535
SfcI CTRYAG 2 cut(s) 333, 789
SfoI GGCGCC 1 cut(s) 61
SinI GGWCC 6 cut(s) 304, 385, 605, 741, 878, 927
SmlI CTYRAG 1 cut(s) 682
SmoI CTYRAG 1 cut(s) 682
Sse9I AATT 5 cut(s) 297, 490, 732, 862, 990
SseBI AGGCCT 1 cut(s) 111
SsiI CCGC 4 cut(s) 195, 545, 1010, 1013
SspDI GGCGCC 1 cut(s) 59
SspMI CTAG 2 cut(s) 101, 977
StuI AGGCCT 1 cut(s) 111
StyD4I CCNGG 4 cut(s) 136, 387, 396, 406
StyI CCWWGG 1 cut(s) 930
TaiI ACGT 1 cut(s) 126
TaqI TCGA 2 cut(s) 264, 676
TasI AATT 5 cut(s) 297, 490, 732, 862, 990
TatI WGTACW 1 cut(s) 420
TauI GCSGC 2 cut(s) 198, 1013
TfiI GAWTC 1 cut(s) 917
TscAI CASTG 1 cut(s) 1045
TseFI GTSAC 2 cut(s) 9, 572
TseI GCWGC 4 cut(s) 29, 244, 332, 788
Tsp45I GTSAC 2 cut(s) 9, 572
TspDTI ATGAA 2 cut(s) 61, 644
TspRI CASTG 1 cut(s) 1045
Tth111I GACNNNGTC 1 cut(s) 7
VpaK11BI GGWCC 6 cut(s) 304, 385, 605, 741, 878, 927
XcmI CCANNNNNNNNNTGG 1 cut(s) 634
XmiI GTMKAC 2 cut(s) 600, 802
XspI CTAG 2 cut(s) 101, 977
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.