Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0016834

Physical Location & Seq

Genomic Coordinates Reverse (-)

29885296 .. 29887205

Gene Structure 1910 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g30060.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGCGTCCAAACAGCCTCCTCCTCCTCTCCCTCTTTCTCTTCGCTCCCCTCCTCGCCTTTGGCGACCATTCTAGAATGTTTCCCAGGCGCGTCATTGACGACGCCGAAGAAGAAGAGTTACTTTCCGGAATGGGTCCCCAGCGCGTGAACATCAACGACGCGCACCTGAAAGAGATCGCGGAGTTCGCCGTGTCGGAGTTCAATAAGGAATCCCTGAAATCGTTGGTGTTCCAGAGAGTGGTCAGTGGGCTTTCTCAGCTGGTAGCAGGAGACTTGTACACGCTTGTTATTGCGGTTAGGGATGAGTCTTTGCCTGCTAGCCCTATTATGAATTATCAGTGTCGCGTCAATGAGAGAGTTTGGTTGGACGACCCCCTCGAGCTCATATCCTTCCATCAACGCTCCGTCTTTTCCAGAGTAGAATACCGAAACCTACTGTTTAGGTTTCGTGTAGATGGGCGGCGGCAATCTAGGTTGTTGCATGTGGTGATCAAGCGGCATCTAGGCGTTGTATTGCTGAGGGAGATCAGAGCGATTCGTGCTTTGGGTTGGGTTGTAGTCGGATCTGTGCGGATCCAATTTGGATTTTCTTCTTGGTCGAGTTCTGTGATTGCAGGAAGCGCCGGTGCAGTCGTGCTTTTGCGGTTGAGATCGGTGGCAGTTGCACTAGGTTTTTGCATATCCAAAGTGGCAGATCAACTCGTCTGCTTGAGGAGGCTCTTTGAGGTTGGCGGAGATGTCCCTATGATATGGAAGACCGCTAGATTGTTCCGACGGAGGCGGCGGCATTCCGGGTTGTCCGATCTGACGGAGCGTGTTCCTGTGTTCTGTGCTATCACGTACATAACCTTGGTTCAAGGCTATTTACTGGGTGGAGGGATACACCATGATGGTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

300

Amino Acids

33.79

Weight (kDa)

10.07

Isoelectric Point (pI)

52.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cystatin	PF00031	45 - 116	5.8e-10	Cystatin domain
SQAPI	PF16845	50 - 132	3.7e-19	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016834)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g30060 FvH4_4g30070
rosa_chinensis	RchiOBHm_Chr5g0010541 RchiOBHm_Chr5g0010601
rosa_laevigata	RLG00000031760
rosa_multiflora	Rmu_sc0001429.1_g000003
rosa_roxburghii	Rroxscaffold_1G00065790
rosa_rugosa	Rorug04G0450800
rosa_samantha	Rh5BG077700 Rh5CG090600 Rh5DG077800 Rh5DG078100
rosa_wichuraiana	Rw0G000730 Rw0G021900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	238
AccII	CGCG	5 cut(s)	90, 144, 161, 179, 345
AccIII	TCCGGA	1 cut(s)	125
AclWI	GGATC	3 cut(s)	568, 571, 581
AcyI	GRCGYC	1 cut(s)	102
AfaI	GTAC	2 cut(s)	278, 842
AfiI	CCNNNNNNNGG	1 cut(s)	238
AgsI	TTSAA	2 cut(s)	202, 857
AjnI	CCWGG	1 cut(s)	83
AluBI	AGCT	2 cut(s)	259, 382
AluI	AGCT	2 cut(s)	259, 382
Alw21I	GWGCWC	1 cut(s)	384
Alw26I	GTCTC	1 cut(s)	264
AlwI	GGATC	3 cut(s)	568, 571, 581
Ama87I	CYCGRG	1 cut(s)	377
Aor13HI	TCCGGA	1 cut(s)	125
AspLEI	GCGC	4 cut(s)	90, 144, 163, 623
AspS9I	GGNCC	1 cut(s)	134
AsuC2I	CCSGG	1 cut(s)	793
AsuHPI	GGTGA	1 cut(s)	499
AsuNHI	GCTAGC	1 cut(s)	317
AvaI	CYCGRG	1 cut(s)	377
AvaII	GGWCC	1 cut(s)	134
BamHI	GGATCC	1 cut(s)	573
BanII	GRGCYC	1 cut(s)	384
BarI	GAAGNNNNNNTAC	2 cut(s)	102, 134
BbsI	GAAGAC	1 cut(s)	761
Bbv12I	GWGCWC	1 cut(s)	384
BbvCI	CCTCAGC	1 cut(s)	518
BccI	CCATC	3 cut(s)	402, 449, 884
BceAI	ACGGC	1 cut(s)	173
BciT130I	CCWGG	1 cut(s)	85
BciVI	GTATCC	1 cut(s)	873
BclI	TGATCA	1 cut(s)	489
BcnI	CCSGG	1 cut(s)	793
BcoDI	GTCTC	1 cut(s)	264
BfaI	CTAG	7 cut(s)	72, 318, 471, 503, 668, 762, 898
BfoI	RGCGCY	1 cut(s)	624
BfuI	GTATCC	1 cut(s)	873
BisI	GCNGC	5 cut(s)	461, 464, 497, 782, 785
BlsI	GCNGC	5 cut(s)	462, 465, 498, 783, 786
Bme1390I	CCNGG	2 cut(s)	85, 793
Bme18I	GGWCC	1 cut(s)	134
BmeT110I	CYCGRG	1 cut(s)	377
BmgT120I	GGNCC	1 cut(s)	134
BmiI	GGNNCC	3 cut(s)	135, 136, 575
BmrFI	CCNGG	2 cut(s)	85, 793
BmrI	ACTGGG	1 cut(s)	878
BmsI	GCATC	1 cut(s)	508
BmtI	GCTAGC	1 cut(s)	321
BmuI	ACTGGG	1 cut(s)	878
BpiI	GAAGAC	1 cut(s)	761
Bpu10I	CCTNAGC	1 cut(s)	518
BpuEI	CTTGAG	1 cut(s)	730
BpuMI	CCSGG	1 cut(s)	793
BsaAI	YACGTR	1 cut(s)	840
BsaHI	GRCGYC	1 cut(s)	102
BsaJI	CCNNGG	2 cut(s)	83, 849
BsaWI	WCCGGW	1 cut(s)	125
Bsc4I	CCNNNNNNNGG	1 cut(s)	238
Bse118I	RCCGGY	1 cut(s)	623
Bse1I	ACTGG	1 cut(s)	873
BseAI	TCCGGA	1 cut(s)	125
BseBI	CCWGG	1 cut(s)	85
BseDI	CCNNGG	2 cut(s)	83, 849
BseGI	GGATG	1 cut(s)	307
BseLI	CCNNNNNNNGG	1 cut(s)	238
BseMII	CTCAG	2 cut(s)	269, 509
BseNI	ACTGG	1 cut(s)	873
BseRI	GAGGAG	5 cut(s)	8, 11, 14, 41, 727
BseYI	CCCAGC	1 cut(s)	138
BsgI	GTGCAG	1 cut(s)	648
Bsh1236I	CGCG	5 cut(s)	90, 144, 161, 179, 345
BsiHKAI	GWGCWC	1 cut(s)	384
BsiHKCI	CYCGRG	1 cut(s)	377
BsiSI	CCGG	3 cut(s)	126, 624, 792
BslFI	GGGAC	2 cut(s)	120, 725
BslI	CCNNNNNNNGG	1 cut(s)	238
BsmAI	GTCTC	1 cut(s)	264
BsmFI	GGGAC	2 cut(s)	120, 725
BsmI	GAATGC	1 cut(s)	787
BsoBI	CYCGRG	1 cut(s)	377
Bsp1286I	GDGCHC	1 cut(s)	384
Bsp13I	TCCGGA	1 cut(s)	125
Bsp1407I	TGTACA	1 cut(s)	276
Bsp143I	GATC	8 cut(s)	174, 489, 525, 563, 573, 650, 694, 802
BspCNI	CTCAG	2 cut(s)	268, 510
BspEI	TCCGGA	1 cut(s)	125
BspFNI	CGCG	5 cut(s)	90, 144, 161, 179, 345
BspLI	GGNNCC	3 cut(s)	135, 136, 575
BspOI	GCTAGC	1 cut(s)	321
BspPI	GGATC	3 cut(s)	568, 571, 581
BsrFI	RCCGGY	1 cut(s)	623
BsrGI	TGTACA	1 cut(s)	276
BsrI	ACTGG	1 cut(s)	873
BssAI	RCCGGY	1 cut(s)	623
BssECI	CCNNGG	2 cut(s)	83, 849
BssMI	GATC	8 cut(s)	174, 489, 525, 563, 573, 650, 694, 802
BssNI	GRCGYC	1 cut(s)	102
BssT1I	CCWWGG	1 cut(s)	849
Bst2UI	CCWGG	1 cut(s)	85
Bst4CI	ACNGT	1 cut(s)	438
Bst6I	CTCTTC	2 cut(s)	44, 108
BstACI	GRCGYC	1 cut(s)	102
BstAUI	TGTACA	1 cut(s)	276
BstBAI	YACGTR	1 cut(s)	840
BstC8I	GCNNGC	2 cut(s)	315, 319
BstDEI	CTNAG	2 cut(s)	255, 518
BstF5I	GGATG	1 cut(s)	307
BstFNI	CGCG	5 cut(s)	90, 144, 161, 179, 345
BstH2I	RGCGCY	1 cut(s)	624
BstHHI	GCGC	4 cut(s)	90, 144, 163, 623
BstKTI	GATC	8 cut(s)	177, 492, 528, 566, 576, 653, 697, 805
BstMAI	GTCTC	1 cut(s)	264
BstMBI	GATC	8 cut(s)	174, 489, 525, 563, 573, 650, 694, 802
BstMWI	GCNNNNNNNGC	4 cut(s)	185, 256, 539, 620
BstNI	CCWGG	1 cut(s)	85
BstNSI	RCATGY	1 cut(s)	485
BstSCI	CCNGG	2 cut(s)	83, 791
BstUI	CGCG	5 cut(s)	90, 144, 161, 179, 345
BstV2I	GAAGAC	1 cut(s)	761
BstX2I	RGATCY	2 cut(s)	563, 573
BstYI	RGATCY	2 cut(s)	563, 573
BsuI	GTATCC	1 cut(s)	873
BtsCI	GGATG	1 cut(s)	307
BtsIMutI	CAGTG	2 cut(s)	250, 344
Cac8I	GCNNGC	2 cut(s)	315, 319
CfoI	GCGC	4 cut(s)	90, 144, 163, 623
Cfr10I	RCCGGY	1 cut(s)	623
Cfr13I	GGNCC	1 cut(s)	134
CseI	GACGC	4 cut(s)	79, 110, 167, 334
Csp6I	GTAC	2 cut(s)	277, 841
CviAII	CATG	2 cut(s)	482, 887
CviJI	RGCY	7 cut(s)	15, 250, 259, 321, 382, 718, 861
CviKI_1	RGCY	7 cut(s)	15, 250, 259, 321, 382, 718, 861
CviQI	GTAC	2 cut(s)	277, 841
DdeI	CTNAG	2 cut(s)	255, 518
DpnI	GATC	8 cut(s)	176, 491, 527, 565, 575, 652, 696, 804
DpnII	GATC	8 cut(s)	174, 489, 525, 563, 573, 650, 694, 802
Eam1104I	CTCTTC	2 cut(s)	44, 108
EarI	CTCTTC	2 cut(s)	44, 108
EciI	GGCGGA	1 cut(s)	747
Ecl136II	GAGCTC	1 cut(s)	382
Eco130I	CCWWGG	1 cut(s)	849
Eco24I	GRGCYC	1 cut(s)	384
Eco47I	GGWCC	1 cut(s)	134
Eco53kI	GAGCTC	1 cut(s)	382
Eco88I	CYCGRG	1 cut(s)	377
EcoICRI	GAGCTC	1 cut(s)	382
EcoO109I	RGGNCCY	1 cut(s)	134
EcoRII	CCWGG	1 cut(s)	83
EcoT14I	CCWWGG	1 cut(s)	849
EcoT38I	GRGCYC	1 cut(s)	384
ErhI	CCWWGG	1 cut(s)	849
FaeI	CATG	2 cut(s)	485, 890
FaiI	YATR	8 cut(s)	329, 386, 483, 680, 746, 751, 845, 888
FalI	AAGNNNNNCTT	2 cut(s)	105, 137
FaqI	GGGAC	2 cut(s)	120, 725
FatI	CATG	2 cut(s)	481, 886
FbaI	TGATCA	1 cut(s)	489
Fnu4HI	GCNGC	5 cut(s)	461, 464, 497, 782, 785
FokI	GGATG	1 cut(s)	314
FriOI	GRGCYC	1 cut(s)	384
Fsp4HI	GCNGC	5 cut(s)	461, 464, 497, 782, 785
FspBI	CTAG	7 cut(s)	72, 318, 471, 503, 668, 762, 898
GlaI	GCGC	4 cut(s)	89, 143, 162, 622
GluI	GCNGC	5 cut(s)	461, 464, 497, 782, 785
GsaI	CCCAGC	1 cut(s)	142
HaeII	RGCGCY	1 cut(s)	624
HapII	CCGG	3 cut(s)	126, 624, 792
HgaI	GACGC	4 cut(s)	79, 110, 167, 334
HhaI	GCGC	4 cut(s)	90, 144, 163, 623
Hin1I	GRCGYC	1 cut(s)	102
Hin1II	CATG	2 cut(s)	485, 890
Hin6I	GCGC	4 cut(s)	88, 142, 161, 621
HinP1I	GCGC	4 cut(s)	88, 142, 161, 621
HinfI	GANTC	3 cut(s)	209, 305, 535
HpaII	CCGG	3 cut(s)	126, 624, 792
HphI	GGTGA	1 cut(s)	499
Hpy166II	GTNNAC	2 cut(s)	148, 279
Hpy188I	TCNGA	6 cut(s)	196, 530, 563, 773, 802, 807
Hpy188III	TCNNGA	4 cut(s)	72, 126, 232, 414
Hpy8I	GTNNAC	2 cut(s)	148, 279
Hpy99I	CGWCG	3 cut(s)	104, 161, 777
HpyAV	CCTTC	1 cut(s)	400
HpyCH4III	ACNGT	1 cut(s)	438
HpyCH4IV	ACGT	1 cut(s)	839
HpyCH4V	TGCA	5 cut(s)	481, 614, 629, 665, 678
HpyF10VI	GCNNNNNNNGC	4 cut(s)	185, 256, 539, 620
HpyF3I	CTNAG	2 cut(s)	255, 518
HpySE526I	ACGT	1 cut(s)	839
Hsp92I	GRCGYC	1 cut(s)	102
Hsp92II	CATG	2 cut(s)	485, 890
HspAI	GCGC	4 cut(s)	88, 142, 161, 621
KflI	GGGWCCC	1 cut(s)	134
Kpn2I	TCCGGA	1 cut(s)	125
Ksp22I	TGATCA	1 cut(s)	489
Kzo9I	GATC	8 cut(s)	174, 489, 525, 563, 573, 650, 694, 802
LmnI	GCTCC	3 cut(s)	49, 407, 811
LweI	GCATC	1 cut(s)	508
MaeI	CTAG	7 cut(s)	72, 318, 471, 503, 668, 762, 898
MaeII	ACGT	1 cut(s)	839
MaeIII	GTNAC	1 cut(s)	117
MalI	GATC	8 cut(s)	176, 491, 527, 565, 575, 652, 696, 804
MboI	GATC	8 cut(s)	174, 489, 525, 563, 573, 650, 694, 802
MboII	GAAGA	6 cut(s)	31, 119, 122, 125, 582, 766
MflI	RGATCY	2 cut(s)	563, 573
MhlI	GDGCHC	1 cut(s)	384
MluCI	AATT	2 cut(s)	331, 578
MlyI	GAGTC	1 cut(s)	314
MmeI	TCCRAC	4 cut(s)	174, 345, 541, 796
MroI	TCCGGA	1 cut(s)	125
MslI	CAYNNNNRTG	1 cut(s)	888
MspA1I	CMGCKG	1 cut(s)	259
MspI	CCGG	3 cut(s)	126, 624, 792
MspR9I	CCNGG	2 cut(s)	85, 793
Mva1269I	GAATGC	1 cut(s)	787
MvaI	CCWGG	1 cut(s)	85
MvnI	CGCG	5 cut(s)	90, 144, 161, 179, 345
MwoI	GCNNNNNNNGC	4 cut(s)	185, 256, 539, 620
NciI	CCSGG	1 cut(s)	793
NdeII	GATC	8 cut(s)	174, 489, 525, 563, 573, 650, 694, 802
NheI	GCTAGC	1 cut(s)	317
NlaIII	CATG	2 cut(s)	485, 890
NlaIV	GGNNCC	3 cut(s)	135, 136, 575
NspI	RCATGY	1 cut(s)	485
PaeR7I	CTCGAG	1 cut(s)	377
PcsI	WCGNNNNNNNCGW	2 cut(s)	60, 375
PctI	GAATGC	1 cut(s)	787
PfeI	GAWTC	2 cut(s)	209, 535
PflMI	CCANNNNNTGG	1 cut(s)	238
PkrI	GCNGC	5 cut(s)	462, 465, 498, 783, 786
PleI	GAGTC	1 cut(s)	313
PpsI	GAGTC	1 cut(s)	313
Ppu21I	YACGTR	1 cut(s)	840
PpuMI	RGGWCCY	1 cut(s)	134
Psp124BI	GAGCTC	1 cut(s)	384
Psp5II	RGGWCCY	1 cut(s)	134
Psp6I	CCWGG	1 cut(s)	83
PspFI	CCCAGC	1 cut(s)	138
PspGI	CCWGG	1 cut(s)	83
PspN4I	GGNNCC	3 cut(s)	135, 136, 575
PspPI	GGNCC	1 cut(s)	134
PspPPI	RGGWCCY	1 cut(s)	134
PspXI	VCTCGAGB	1 cut(s)	377
PsuI	RGATCY	2 cut(s)	563, 573
PvuII	CAGCTG	1 cut(s)	259
RsaI	GTAC	2 cut(s)	278, 842
RsaNI	GTAC	2 cut(s)	277, 841
RseI	CAYNNNNRTG	1 cut(s)	888
SacI	GAGCTC	1 cut(s)	384
SatI	GCNGC	5 cut(s)	461, 464, 497, 782, 785
Sau3AI	GATC	8 cut(s)	174, 489, 525, 563, 573, 650, 694, 802
Sau96I	GGNCC	1 cut(s)	134
SchI	GAGTC	1 cut(s)	314
ScrFI	CCNGG	2 cut(s)	85, 793
SduI	GDGCHC	1 cut(s)	384
SfaNI	GCATC	1 cut(s)	508
Sfr274I	CTCGAG	1 cut(s)	377
SgrAI	CRCCGGYG	1 cut(s)	623
SinI	GGWCC	1 cut(s)	134
SlaI	CTCGAG	1 cut(s)	377
SmiMI	CAYNNNNRTG	1 cut(s)	888
SmlI	CTYRAG	2 cut(s)	377, 709
SmoI	CTYRAG	2 cut(s)	377, 709
Sse9I	AATT	2 cut(s)	331, 578
SspMI	CTAG	7 cut(s)	72, 318, 471, 503, 668, 762, 898
SstI	GAGCTC	1 cut(s)	384
StyD4I	CCNGG	2 cut(s)	83, 791
StyI	CCWWGG	1 cut(s)	849
TaaI	ACNGT	1 cut(s)	438
TaiI	ACGT	1 cut(s)	842
TaqI	TCGA	2 cut(s)	378, 599
TasI	AATT	2 cut(s)	331, 578
TatI	WGTACW	1 cut(s)	276
TauI	GCSGC	5 cut(s)	463, 466, 499, 784, 787
TfiI	GAWTC	2 cut(s)	209, 535
TscAI	CASTG	2 cut(s)	250, 344
TspDTI	ATGAA	1 cut(s)	344
TspGWI	ACGGA	3 cut(s)	394, 790, 824
TspRI	CASTG	2 cut(s)	250, 344
Van91I	CCANNNNNTGG	1 cut(s)	238
VpaK11BI	GGWCC	1 cut(s)	134
XbaI	TCTAGA	1 cut(s)	71
XceI	RCATGY	1 cut(s)	485
XhoI	CTCGAG	1 cut(s)	377
XspI	CTAG	7 cut(s)	72, 318, 471, 503, 668, 762, 898

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.