Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0016834

Physical Location & Seq

Genomic Coordinates Forward (+)

6849806 .. 6850307

Gene Structure 502 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG078100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGCCCCAACCGCAAGCCATCATGATGCGTCCAATCTGCCTCCTCCTCTCCCTCTTTCTTGCCGTTGGTGCTGTTTCCTTCGATCCAGTAGGTGCACGCTGGCCTGTTAACATCAATGACCCCGAGGTGAAAGAGATCGCCGAGTTCGCTGTCTCCGAGTTCAATAAGGAATCTGGGAAAACGTTGGTGTTCCAGAAAGTGGTCAGTGGCCTTGGTCAGGACGTAGCAGGAGTGACTTATGATCTTGTCATTGCGGTCAGGGATGAGTCCTTGCCTAGTAGCCCAATTGTGAATTATGCGTGTTATGTCTGGGAAAGATCTTGGGAGAATTTCAGGAAACTTGAATCCTTCCATCAAGTTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

121

Amino Acids

13.55

Weight (kDa)

4.89

Isoelectric Point (pI)

57.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cystatin	PF00031	35 - 120	3.6e-12	Cystatin domain
SQAPI	PF16845	37 - 120	8.4e-27	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016834)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g30060 FvH4_4g30070
rosa_chinensis	RchiOBHm_Chr5g0010541 RchiOBHm_Chr5g0010601
rosa_laevigata	RLG00000031760
rosa_multiflora	Rmu_sc0001429.1_g000003
rosa_roxburghii	Rroxscaffold_1G00065790
rosa_rugosa	Rorug04G0450800
rosa_samantha	Rh5BG077700 Rh5CG090600 Rh5DG077800 Rh5DG078100
rosa_wichuraiana	Rw0G000730 Rw0G021900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	199
AciI	CCGC	2 cut(s)	11, 254
AclI	AACGTT	1 cut(s)	182
AclWI	GGATC	1 cut(s)	77
AcsI	RAATTY	1 cut(s)	328
AfiI	CCNNNNNNNGG	2 cut(s)	199, 217
AgsI	TTSAA	2 cut(s)	163, 344
Alw21I	GWGCWC	1 cut(s)	97
Alw26I	GTCTC	1 cut(s)	157
Alw44I	GTGCAC	1 cut(s)	93
AlwI	GGATC	1 cut(s)	77
Ama87I	CYCGRG	1 cut(s)	122
AoxI	GGCC	2 cut(s)	101, 208
ApaLI	GTGCAC	1 cut(s)	93
ApoI	RAATTY	1 cut(s)	328
AsuHPI	GGTGA	1 cut(s)	139
AvaI	CYCGRG	1 cut(s)	122
BaeGI	GKGCMC	1 cut(s)	97
Bbv12I	GWGCWC	1 cut(s)	97
BccI	CCATC	2 cut(s)	26, 360
BceAI	ACGGC	1 cut(s)	47
BcoDI	GTCTC	1 cut(s)	157
BfaI	CTAG	1 cut(s)	276
BglII	AGATCT	1 cut(s)	317
BmeT110I	CYCGRG	1 cut(s)	122
BmsI	GCATC	1 cut(s)	15
BsaJI	CCNNGG	2 cut(s)	123, 211
Bsc4I	CCNNNNNNNGG	2 cut(s)	199, 217
Bse1I	ACTGG	1 cut(s)	86
Bse3DI	GCAATG	1 cut(s)	249
BseDI	CCNNGG	2 cut(s)	123, 211
BseGI	GGATG	1 cut(s)	268
BseLI	CCNNNNNNNGG	2 cut(s)	199, 217
BseMI	GCAATG	1 cut(s)	249
BseNI	ACTGG	1 cut(s)	86
BseRI	GAGGAG	2 cut(s)	32, 35
BseSI	GKGCMC	1 cut(s)	97
BshFI	GGCC	2 cut(s)	103, 210
BsiHKAI	GWGCWC	1 cut(s)	97
BsiHKCI	CYCGRG	1 cut(s)	122
BslI	CCNNNNNNNGG	2 cut(s)	199, 217
BsmAI	GTCTC	1 cut(s)	157
BsnI	GGCC	2 cut(s)	103, 210
BsoBI	CYCGRG	1 cut(s)	122
Bsp1286I	GDGCHC	1 cut(s)	97
Bsp143I	GATC	4 cut(s)	82, 135, 241, 317
BspACI	CCGC	2 cut(s)	11, 254
BspANI	GGCC	2 cut(s)	103, 210
BspHI	TCATGA	1 cut(s)	21
BspPI	GGATC	1 cut(s)	77
BsrDI	GCAATG	1 cut(s)	249
BsrI	ACTGG	1 cut(s)	86
BssECI	CCNNGG	2 cut(s)	123, 211
BssMI	GATC	4 cut(s)	82, 135, 241, 317
BssT1I	CCWWGG	1 cut(s)	211
BstC8I	GCNNGC	3 cut(s)	15, 97, 101
BstENI	CCTNNNNNAGG	1 cut(s)	215
BstF5I	GGATG	1 cut(s)	268
BstKTI	GATC	4 cut(s)	85, 138, 244, 320
BstMAI	GTCTC	1 cut(s)	157
BstMBI	GATC	4 cut(s)	82, 135, 241, 317
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 68, 146
BstSLI	GKGCMC	1 cut(s)	97
BstX2I	RGATCY	1 cut(s)	317
BstYI	RGATCY	1 cut(s)	317
BsuRI	GGCC	2 cut(s)	103, 210
BtsCI	GGATG	1 cut(s)	268
BtsIMutI	CAGTG	1 cut(s)	211
Cac8I	GCNNGC	3 cut(s)	15, 97, 101
CciI	TCATGA	1 cut(s)	21
CseI	GACGC	1 cut(s)	17
CviAII	CATG	1 cut(s)	22
CviJI	RGCY	4 cut(s)	17, 103, 210, 282
CviKI_1	RGCY	4 cut(s)	17, 103, 210, 282
DpnI	GATC	4 cut(s)	84, 137, 243, 319
DpnII	GATC	4 cut(s)	82, 135, 241, 317
Eco130I	CCWWGG	1 cut(s)	211
Eco88I	CYCGRG	1 cut(s)	122
EcoNI	CCTNNNNNAGG	1 cut(s)	215
EcoT14I	CCWWGG	1 cut(s)	211
ErhI	CCWWGG	1 cut(s)	211
FaeI	CATG	1 cut(s)	25
FaiI	YATR	4 cut(s)	23, 240, 297, 306
FatI	CATG	1 cut(s)	21
FokI	GGATG	1 cut(s)	275
FspBI	CTAG	1 cut(s)	276
HaeIII	GGCC	2 cut(s)	103, 210
HgaI	GACGC	1 cut(s)	17
Hin1II	CATG	1 cut(s)	25
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HinfI	GANTC	3 cut(s)	170, 266, 344
HpaI	GTTAAC	1 cut(s)	109
HphI	GGTGA	1 cut(s)	139
Hpy166II	GTNNAC	2 cut(s)	95, 109
Hpy188I	TCNGA	1 cut(s)	157
Hpy188III	TCNNGA	4 cut(s)	22, 193, 218, 334
Hpy8I	GTNNAC	2 cut(s)	95, 109
HpyAV	CCTTC	2 cut(s)	88, 358
HpyCH4IV	ACGT	2 cut(s)	182, 222
HpyCH4V	TGCA	1 cut(s)	95
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 68, 146
HpySE526I	ACGT	2 cut(s)	182, 222
Hsp92II	CATG	1 cut(s)	25
KspAI	GTTAAC	1 cut(s)	109
Kzo9I	GATC	4 cut(s)	82, 135, 241, 317
LweI	GCATC	1 cut(s)	15
MaeI	CTAG	1 cut(s)	276
MaeII	ACGT	2 cut(s)	182, 222
MaeIII	GTNAC	1 cut(s)	232
MalI	GATC	4 cut(s)	84, 137, 243, 319
MboI	GATC	4 cut(s)	82, 135, 241, 317
MfeI	CAATTG	1 cut(s)	285
MflI	RGATCY	1 cut(s)	317
MhlI	GDGCHC	1 cut(s)	97
MluCI	AATT	4 cut(s)	285, 292, 328, 361
MlyI	GAGTC	1 cut(s)	275
MnlI	CCTC	5 cut(s)	50, 53, 56, 62, 118
MseI	TTAA	3 cut(s)	108, 360, 364
MslI	CAYNNNNRTG	1 cut(s)	23
MunI	CAATTG	1 cut(s)	285
MwoI	GCNNNNNNNGC	3 cut(s)	10, 68, 146
NdeII	GATC	4 cut(s)	82, 135, 241, 317
NlaIII	CATG	1 cut(s)	25
NmeAIII	GCCGAG	1 cut(s)	166
NmuCI	GTSAC	1 cut(s)	232
PacI	TTAATTAA	1 cut(s)	364
PagI	TCATGA	1 cut(s)	21
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PfeI	GAWTC	2 cut(s)	170, 344
PflMI	CCANNNNNTGG	1 cut(s)	199
PleI	GAGTC	1 cut(s)	274
PpsI	GAGTC	1 cut(s)	274
Psp1406I	AACGTT	1 cut(s)	182
PsuI	RGATCY	1 cut(s)	317
RseI	CAYNNNNRTG	1 cut(s)	23
SaqAI	TTAA	3 cut(s)	108, 360, 364
Sau3AI	GATC	4 cut(s)	82, 135, 241, 317
SchI	GAGTC	1 cut(s)	275
SduI	GDGCHC	1 cut(s)	97
SetI	ASST	4 cut(s)	94, 129, 185, 225
SfaNI	GCATC	1 cut(s)	15
SmiMI	CAYNNNNRTG	1 cut(s)	23
Sse9I	AATT	4 cut(s)	285, 292, 328, 361
SsiI	CCGC	2 cut(s)	11, 254
SspMI	CTAG	1 cut(s)	276
StyI	CCWWGG	1 cut(s)	211
TaiI	ACGT	2 cut(s)	185, 225
TaqI	TCGA	1 cut(s)	81
TasI	AATT	4 cut(s)	285, 292, 328, 361
TfiI	GAWTC	2 cut(s)	170, 344
Tru1I	TTAA	3 cut(s)	108, 360, 364
Tru9I	TTAA	3 cut(s)	108, 360, 364
TscAI	CASTG	1 cut(s)	211
TseFI	GTSAC	1 cut(s)	232
Tsp45I	GTSAC	1 cut(s)	232
TspRI	CASTG	1 cut(s)	211
Van91I	CCANNNNNTGG	1 cut(s)	199
VneI	GTGCAC	1 cut(s)	93
XagI	CCTNNNNNAGG	1 cut(s)	215
XapI	RAATTY	1 cut(s)	328
XspI	CTAG	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.