Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00020

Orthogroup ID

OG0016834

Physical Location & Seq

Genomic Coordinates Reverse (-)

142431 .. 142799

Gene Structure 369 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G000730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGCGTCCAATCTGCCTCCTCCTCTCCCTCTTTCTCTTTGGTTTTCTCCTCACCGTTGGTGCTGTTTCCTTCGATGCTTCCTTCGGTCCAGTGATTGGTGCACCCCAACCCGTTAACATCAACGACCCCGAGGTGAAAGAGATCGCCAAGTTCGCTGTCTCCGAGTTCAATAAGCAATCCCGGAAGACGTTGGTGTTCCAGAAAGTGGTCAGTGGCCTTGATCAGGTCGTAGAAGGAATGAGTTATTATCTTGTCATTGCGGTCAGGGATGAGTCCTTGCCTACTAGCCCAATTCTGAATTATGAGTGTCATGTCTGGGATAGACCTTGGCTGAATTTCAGGAAACTGGAATCCTTCCATCCAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

122

Amino Acids

13.76

Weight (kDa)

6.07

Isoelectric Point (pI)

56.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cystatin	PF00031	33 - 117	1e-14	Cystatin domain
SQAPI	PF16845	39 - 121	1.9e-27	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016834)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g30060 FvH4_4g30070
rosa_chinensis	RchiOBHm_Chr5g0010541 RchiOBHm_Chr5g0010601
rosa_laevigata	RLG00000031760
rosa_multiflora	Rmu_sc0001429.1_g000003
rosa_roxburghii	Rroxscaffold_1G00065790
rosa_rugosa	Rorug04G0450800
rosa_samantha	Rh5BG077700 Rh5CG090600 Rh5DG077800 Rh5DG078100
rosa_wichuraiana	Rw0G000730 Rw0G021900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	95, 205
AciI	CCGC	1 cut(s)	260
AcsI	RAATTY	1 cut(s)	334
AfiI	CCNNNNNNNGG	3 cut(s)	95, 205, 223
AgsI	TTSAA	1 cut(s)	169
Alw21I	GWGCWC	1 cut(s)	103
Alw26I	GTCTC	1 cut(s)	163
Alw44I	GTGCAC	1 cut(s)	99
Ama87I	CYCGRG	1 cut(s)	128
AoxI	GGCC	1 cut(s)	214
ApaLI	GTGCAC	1 cut(s)	99
ApoI	RAATTY	1 cut(s)	334
AspS9I	GGNCC	1 cut(s)	86
AsuC2I	CCSGG	1 cut(s)	181
AsuHPI	GGTGA	2 cut(s)	43, 145
AvaI	CYCGRG	1 cut(s)	128
AvaII	GGWCC	1 cut(s)	86
BaeGI	GKGCMC	1 cut(s)	103
BbsI	GAAGAC	1 cut(s)	191
Bbv12I	GWGCWC	1 cut(s)	103
BccI	CCATC	1 cut(s)	366
BclI	TGATCA	1 cut(s)	220
BcnI	CCSGG	1 cut(s)	181
BcoDI	GTCTC	1 cut(s)	163
BfaI	CTAG	1 cut(s)	285
Bme1390I	CCNGG	1 cut(s)	181
Bme18I	GGWCC	1 cut(s)	86
BmeT110I	CYCGRG	1 cut(s)	128
BmgT120I	GGNCC	1 cut(s)	86
BmrFI	CCNGG	1 cut(s)	181
BmsI	GCATC	1 cut(s)	64
BpiI	GAAGAC	1 cut(s)	191
BpuMI	CCSGG	1 cut(s)	181
BsaJI	CCNNGG	2 cut(s)	129, 326
Bsc4I	CCNNNNNNNGG	3 cut(s)	95, 205, 223
Bse1I	ACTGG	2 cut(s)	89, 351
Bse3DI	GCAATG	1 cut(s)	255
BseDI	CCNNGG	2 cut(s)	129, 326
BseGI	GGATG	2 cut(s)	274, 358
BseLI	CCNNNNNNNGG	3 cut(s)	95, 205, 223
BseMI	GCAATG	1 cut(s)	255
BseNI	ACTGG	2 cut(s)	89, 351
BseRI	GAGGAG	3 cut(s)	8, 11, 38
BseSI	GKGCMC	1 cut(s)	103
BshFI	GGCC	1 cut(s)	216
BsiHKAI	GWGCWC	1 cut(s)	103
BsiHKCI	CYCGRG	1 cut(s)	128
BsiSI	CCGG	1 cut(s)	181
BslI	CCNNNNNNNGG	3 cut(s)	95, 205, 223
BsmAI	GTCTC	1 cut(s)	163
BsnI	GGCC	1 cut(s)	216
BsoBI	CYCGRG	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	103
Bsp143I	GATC	2 cut(s)	141, 220
BspACI	CCGC	1 cut(s)	260
BspANI	GGCC	1 cut(s)	216
BsrDI	GCAATG	1 cut(s)	255
BsrI	ACTGG	2 cut(s)	89, 351
BssECI	CCNNGG	2 cut(s)	129, 326
BssMI	GATC	2 cut(s)	141, 220
BssT1I	CCWWGG	1 cut(s)	326
Bst4CI	ACNGT	1 cut(s)	55
BstENI	CCTNNNNNAGG	1 cut(s)	221
BstF5I	GGATG	2 cut(s)	274, 358
BstKTI	GATC	2 cut(s)	144, 223
BstMAI	GTCTC	1 cut(s)	163
BstMBI	GATC	2 cut(s)	141, 220
BstMWI	GCNNNNNNNGC	1 cut(s)	152
BstSCI	CCNGG	1 cut(s)	179
BstSLI	GKGCMC	1 cut(s)	103
BstV2I	GAAGAC	1 cut(s)	191
BsuRI	GGCC	1 cut(s)	216
BtsCI	GGATG	2 cut(s)	274, 358
BtsIMutI	CAGTG	2 cut(s)	96, 217
Cfr13I	GGNCC	1 cut(s)	86
CviAII	CATG	1 cut(s)	311
CviJI	RGCY	3 cut(s)	216, 288, 331
CviKI_1	RGCY	3 cut(s)	216, 288, 331
DpnI	GATC	2 cut(s)	143, 222
DpnII	GATC	2 cut(s)	141, 220
Eco130I	CCWWGG	1 cut(s)	326
Eco47I	GGWCC	1 cut(s)	86
Eco88I	CYCGRG	1 cut(s)	128
EcoNI	CCTNNNNNAGG	1 cut(s)	221
EcoT14I	CCWWGG	1 cut(s)	326
ErhI	CCWWGG	1 cut(s)	326
FaeI	CATG	1 cut(s)	314
FaiI	YATR	2 cut(s)	303, 312
FatI	CATG	1 cut(s)	310
FbaI	TGATCA	1 cut(s)	220
FokI	GGATG	2 cut(s)	281, 345
FspBI	CTAG	1 cut(s)	285
HaeIII	GGCC	1 cut(s)	216
HapII	CCGG	1 cut(s)	181
Hin1II	CATG	1 cut(s)	314
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HinfI	GANTC	2 cut(s)	272, 350
HpaI	GTTAAC	1 cut(s)	115
HpaII	CCGG	1 cut(s)	181
HphI	GGTGA	2 cut(s)	43, 145
Hpy166II	GTNNAC	2 cut(s)	101, 115
Hpy188I	TCNGA	2 cut(s)	163, 297
Hpy188III	TCNNGA	2 cut(s)	199, 340
Hpy8I	GTNNAC	2 cut(s)	101, 115
HpyAV	CCTTC	4 cut(s)	79, 91, 227, 364
HpyCH4III	ACNGT	1 cut(s)	55
HpyCH4IV	ACGT	1 cut(s)	188
HpyCH4V	TGCA	1 cut(s)	101
HpyF10VI	GCNNNNNNNGC	1 cut(s)	152
HpySE526I	ACGT	1 cut(s)	188
Hsp92II	CATG	1 cut(s)	314
Ksp22I	TGATCA	1 cut(s)	220
KspAI	GTTAAC	1 cut(s)	115
Kzo9I	GATC	2 cut(s)	141, 220
LpnPI	CCDG	8 cut(s)	102, 194, 209, 212, 250, 301, 325, 332
LweI	GCATC	1 cut(s)	64
MaeI	CTAG	1 cut(s)	285
MaeII	ACGT	1 cut(s)	188
MalI	GATC	2 cut(s)	143, 222
MboI	GATC	2 cut(s)	141, 220
MboII	GAAGA	1 cut(s)	196
MhlI	GDGCHC	1 cut(s)	103
MluCI	AATT	3 cut(s)	291, 298, 334
MlyI	GAGTC	1 cut(s)	281
MnlI	CCTC	6 cut(s)	26, 29, 32, 38, 59, 124
MseI	TTAA	2 cut(s)	114, 367
MspI	CCGG	1 cut(s)	181
MspR9I	CCNGG	1 cut(s)	181
MwoI	GCNNNNNNNGC	1 cut(s)	152
NciI	CCSGG	1 cut(s)	181
NdeII	GATC	2 cut(s)	141, 220
NlaIII	CATG	1 cut(s)	314
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PfeI	GAWTC	1 cut(s)	350
PflMI	CCANNNNNTGG	2 cut(s)	95, 205
PfoI	TCCNGGA	1 cut(s)	179
PleI	GAGTC	1 cut(s)	280
PpsI	GAGTC	1 cut(s)	280
PspPI	GGNCC	1 cut(s)	86
SaqAI	TTAA	2 cut(s)	114, 367
Sau3AI	GATC	2 cut(s)	141, 220
Sau96I	GGNCC	1 cut(s)	86
SchI	GAGTC	1 cut(s)	281
ScrFI	CCNGG	1 cut(s)	181
SduI	GDGCHC	1 cut(s)	103
SetI	ASST	4 cut(s)	135, 191, 228, 328
SfaNI	GCATC	1 cut(s)	64
SinI	GGWCC	1 cut(s)	86
Sse9I	AATT	3 cut(s)	291, 298, 334
SsiI	CCGC	1 cut(s)	260
SspMI	CTAG	1 cut(s)	285
StyD4I	CCNGG	1 cut(s)	179
StyI	CCWWGG	1 cut(s)	326
TaaI	ACNGT	1 cut(s)	55
TaiI	ACGT	1 cut(s)	191
TaqI	TCGA	1 cut(s)	72
TaqII	GACCGA	1 cut(s)	74
TasI	AATT	3 cut(s)	291, 298, 334
TfiI	GAWTC	1 cut(s)	350
Tru1I	TTAA	2 cut(s)	114, 367
Tru9I	TTAA	2 cut(s)	114, 367
TscAI	CASTG	2 cut(s)	96, 217
TspRI	CASTG	2 cut(s)	96, 217
Van91I	CCANNNNNTGG	2 cut(s)	95, 205
VneI	GTGCAC	1 cut(s)	99
VpaK11BI	GGWCC	1 cut(s)	86
XagI	CCTNNNNNAGG	1 cut(s)	221
XapI	RAATTY	1 cut(s)	334
XspI	CTAG	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.