Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0016834

Physical Location & Seq

Genomic Coordinates Reverse (-)

29891999 .. 29892702

Gene Structure 704 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g30070.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGCGTCCAAACTGCCTCCTCCTCCTCCTCTCCCTCTTTCTTTTCGCTCCCCTCAAAGAGTTACTTGCCGGAATGGGTCCCCAGCGCGTGAACATCAACGACGCACACCTGAAAGAGATCGCGGAGTTCGCCGTGTCGGAGTTCAATAAGGAATCCCTGAAATCGTTGGTGTTCCAGAGAGTGGTCAGTGGGCTTTCTCAGCTGGTAGAAGGAGACTTGTACACGCTTGTCATTGCGGTTAGGGATGAGTCTTTGCCTGCTAGCCCTATTATGAATTATCAGTGTCGCGTCAATGAGAGAGTTTGGTTGGACGACCCCCTCAAGCTCATATCCTTCCATCAAGTTTTCTATGACACAGTCATTTCAATGTGGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

126

Amino Acids

14.28

Weight (kDa)

5.1

Isoelectric Point (pI)

33.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cystatin	PF00031	26 - 98	3.9e-10	Cystatin domain
SQAPI	PF16845	31 - 114	5.6e-20	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016834)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g30060 FvH4_4g30070
rosa_chinensis	RchiOBHm_Chr5g0010541 RchiOBHm_Chr5g0010601
rosa_laevigata	RLG00000031760
rosa_multiflora	Rmu_sc0001429.1_g000003
rosa_roxburghii	Rroxscaffold_1G00065790
rosa_rugosa	Rorug04G0450800
rosa_samantha	Rh5BG077700 Rh5CG090600 Rh5DG077800 Rh5DG078100
rosa_wichuraiana	Rw0G000730 Rw0G021900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	181
AccII	CGCG	3 cut(s)	87, 122, 288
AciI	CCGC	2 cut(s)	122, 236
AfaI	GTAC	1 cut(s)	221
AfiI	CCNNNNNNNGG	1 cut(s)	181
AgsI	TTSAA	2 cut(s)	145, 366
AluBI	AGCT	2 cut(s)	202, 325
AluI	AGCT	2 cut(s)	202, 325
Alw26I	GTCTC	1 cut(s)	207
AspLEI	GCGC	1 cut(s)	87
AspS9I	GGNCC	1 cut(s)	77
AsuNHI	GCTAGC	1 cut(s)	260
AvaII	GGWCC	1 cut(s)	77
BccI	CCATC	1 cut(s)	345
BceAI	ACGGC	1 cut(s)	116
BcoDI	GTCTC	1 cut(s)	207
BfaI	CTAG	1 cut(s)	261
Bme18I	GGWCC	1 cut(s)	77
BmgT120I	GGNCC	1 cut(s)	77
BmiI	GGNNCC	2 cut(s)	78, 79
BmtI	GCTAGC	1 cut(s)	264
BpuEI	CTTGAG	1 cut(s)	305
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
Bse3DI	GCAATG	1 cut(s)	231
BseGI	GGATG	1 cut(s)	250
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseMI	GCAATG	1 cut(s)	231
BseMII	CTCAG	1 cut(s)	212
BseRI	GAGGAG	4 cut(s)	8, 11, 14, 17
BseYI	CCCAGC	1 cut(s)	81
Bsh1236I	CGCG	3 cut(s)	87, 122, 288
BsiSI	CCGG	1 cut(s)	69
BslFI	GGGAC	1 cut(s)	63
BslI	CCNNNNNNNGG	1 cut(s)	181
BsmAI	GTCTC	1 cut(s)	207
BsmFI	GGGAC	1 cut(s)	63
Bsp1407I	TGTACA	1 cut(s)	219
Bsp143I	GATC	1 cut(s)	117
BspACI	CCGC	2 cut(s)	122, 236
BspCNI	CTCAG	1 cut(s)	211
BspFNI	CGCG	3 cut(s)	87, 122, 288
BspLI	GGNNCC	2 cut(s)	78, 79
BspOI	GCTAGC	1 cut(s)	264
BsrDI	GCAATG	1 cut(s)	231
BsrGI	TGTACA	1 cut(s)	219
BssMI	GATC	1 cut(s)	117
Bst4CI	ACNGT	1 cut(s)	358
BstAUI	TGTACA	1 cut(s)	219
BstC8I	GCNNGC	2 cut(s)	258, 262
BstDEI	CTNAG	1 cut(s)	198
BstF5I	GGATG	1 cut(s)	250
BstFNI	CGCG	3 cut(s)	87, 122, 288
BstHHI	GCGC	1 cut(s)	87
BstKTI	GATC	1 cut(s)	120
BstMAI	GTCTC	1 cut(s)	207
BstMBI	GATC	1 cut(s)	117
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 199
BstUI	CGCG	3 cut(s)	87, 122, 288
BtsCI	GGATG	1 cut(s)	250
BtsIMutI	CAGTG	2 cut(s)	193, 287
Cac8I	GCNNGC	2 cut(s)	258, 262
CfoI	GCGC	1 cut(s)	87
Cfr13I	GGNCC	1 cut(s)	77
CseI	GACGC	2 cut(s)	110, 277
Csp6I	GTAC	1 cut(s)	220
CviJI	RGCY	4 cut(s)	193, 202, 264, 325
CviKI_1	RGCY	4 cut(s)	193, 202, 264, 325
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	1 cut(s)	198
DpnI	GATC	1 cut(s)	119
DpnII	GATC	1 cut(s)	117
Eco47I	GGWCC	1 cut(s)	77
EcoO109I	RGGNCCY	1 cut(s)	77
FaiI	YATR	3 cut(s)	272, 329, 351
FalI	AAGNNNNNCTT	2 cut(s)	48, 80
FaqI	GGGAC	1 cut(s)	63
FokI	GGATG	1 cut(s)	257
FspBI	CTAG	1 cut(s)	261
GlaI	GCGC	1 cut(s)	86
GsaI	CCCAGC	1 cut(s)	85
HapII	CCGG	1 cut(s)	69
HgaI	GACGC	2 cut(s)	110, 277
HhaI	GCGC	1 cut(s)	87
Hin6I	GCGC	1 cut(s)	85
HinP1I	GCGC	1 cut(s)	85
HinfI	GANTC	2 cut(s)	152, 248
HpaII	CCGG	1 cut(s)	69
Hpy166II	GTNNAC	2 cut(s)	91, 222
Hpy188I	TCNGA	1 cut(s)	139
Hpy188III	TCNNGA	1 cut(s)	175
Hpy8I	GTNNAC	2 cut(s)	91, 222
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	2 cut(s)	203, 343
HpyCH4III	ACNGT	1 cut(s)	358
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 199
HpyF3I	CTNAG	1 cut(s)	198
HspAI	GCGC	1 cut(s)	85
KflI	GGGWCCC	1 cut(s)	77
Kzo9I	GATC	1 cut(s)	117
LmnI	GCTCC	1 cut(s)	52
LpnPI	CCDG	7 cut(s)	82, 95, 122, 170, 188, 188, 270
MaeI	CTAG	1 cut(s)	261
MaeIII	GTNAC	1 cut(s)	60
MalI	GATC	1 cut(s)	119
MboI	GATC	1 cut(s)	117
MluCI	AATT	1 cut(s)	274
MlyI	GAGTC	1 cut(s)	257
MmeI	TCCRAC	2 cut(s)	117, 288
MnlI	CCTC	8 cut(s)	26, 29, 32, 35, 38, 44, 62, 329
MslI	CAYNNNNRTG	1 cut(s)	365
MspA1I	CMGCKG	1 cut(s)	202
MspI	CCGG	1 cut(s)	69
MvnI	CGCG	3 cut(s)	87, 122, 288
MwoI	GCNNNNNNNGC	2 cut(s)	128, 199
NdeII	GATC	1 cut(s)	117
NheI	GCTAGC	1 cut(s)	260
NlaIV	GGNNCC	2 cut(s)	78, 79
PfeI	GAWTC	1 cut(s)	152
PflFI	GACNNNGTC	1 cut(s)	356
PflMI	CCANNNNNTGG	1 cut(s)	181
PleI	GAGTC	1 cut(s)	256
PpsI	GAGTC	1 cut(s)	256
PpuMI	RGGWCCY	1 cut(s)	77
Psp5II	RGGWCCY	1 cut(s)	77
PspFI	CCCAGC	1 cut(s)	81
PspN4I	GGNNCC	2 cut(s)	78, 79
PspPI	GGNCC	1 cut(s)	77
PspPPI	RGGWCCY	1 cut(s)	77
PsyI	GACNNNGTC	1 cut(s)	356
PvuII	CAGCTG	1 cut(s)	202
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
RseI	CAYNNNNRTG	1 cut(s)	365
Sau3AI	GATC	1 cut(s)	117
Sau96I	GGNCC	1 cut(s)	77
SchI	GAGTC	1 cut(s)	257
SetI	ASST	3 cut(s)	111, 204, 327
SinI	GGWCC	1 cut(s)	77
SmiMI	CAYNNNNRTG	1 cut(s)	365
SmlI	CTYRAG	1 cut(s)	320
SmoI	CTYRAG	1 cut(s)	320
Sse9I	AATT	1 cut(s)	274
SsiI	CCGC	2 cut(s)	122, 236
SspMI	CTAG	1 cut(s)	261
TaaI	ACNGT	1 cut(s)	358
TasI	AATT	1 cut(s)	274
TatI	WGTACW	1 cut(s)	219
TfiI	GAWTC	1 cut(s)	152
TscAI	CASTG	2 cut(s)	193, 287
TspDTI	ATGAA	1 cut(s)	287
TspRI	CASTG	2 cut(s)	193, 287
Tth111I	GACNNNGTC	1 cut(s)	356
Van91I	CCANNNNNTGG	1 cut(s)	181
VpaK11BI	GGWCC	1 cut(s)	77
XspI	CTAG	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.