Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0016834

Physical Location & Seq

Genomic Coordinates Forward (+)

7166565 .. 7167055

Gene Structure 491 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG090600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGCCCCAACCGCAAGCCATGATGATGCGTCCAATCTGCCTCCTCCTCTCCCTCTTTCTCTTTGGTTTTCTGCTCGCCGTTGGTGCTGTTTCCTTCGATGCTTCCTTCGGTCCAGTGGTTGGTGCACCCTGGCCCGTTAACATCAACGACCCCGAGGTGAAAGAGATCGCCGAGTTCGCTGTCTCCGAGTTCAATAAGGAATCTGGGAAAACGTTGGTGTTCCAGAAAGTGGTCAGTGGCCTTGGTCAGGACGTAGCAGGAGTGACTTATGATCTTGTCATTGCGGTCAGGGATGAGTCCTTGCCTAGTAGCCCAATTGTGAATTATGCGTGTTATGTCTGGGAAAGATCTTGGGAGAATTTCAGGAAACTTGAATCCTTCCATCAAGTTCTTCCATCAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

134

Amino Acids

14.81

Weight (kDa)

4.72

Isoelectric Point (pI)

53.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cystatin	PF00031	41 - 128	3.3e-12	Cystatin domain
SQAPI	PF16845	47 - 130	1.1e-26	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0016834)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g30060 FvH4_4g30070
rosa_chinensis	RchiOBHm_Chr5g0010541 RchiOBHm_Chr5g0010601
rosa_laevigata	RLG00000031760
rosa_multiflora	Rmu_sc0001429.1_g000003
rosa_roxburghii	Rroxscaffold_1G00065790
rosa_rugosa	Rorug04G0450800
rosa_samantha	Rh5BG077700 Rh5CG090600 Rh5DG077800 Rh5DG078100
rosa_wichuraiana	Rw0G000730 Rw0G021900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	119, 229
AciI	CCGC	2 cut(s)	11, 284
AclI	AACGTT	1 cut(s)	212
AcsI	RAATTY	1 cut(s)	358
AfiI	CCNNNNNNNGG	3 cut(s)	119, 229, 247
AgsI	TTSAA	2 cut(s)	193, 374
AjnI	CCWGG	1 cut(s)	128
Alw21I	GWGCWC	1 cut(s)	127
Alw26I	GTCTC	1 cut(s)	187
Alw44I	GTGCAC	1 cut(s)	123
Ama87I	CYCGRG	1 cut(s)	152
AoxI	GGCC	2 cut(s)	131, 238
ApaLI	GTGCAC	1 cut(s)	123
ApoI	RAATTY	1 cut(s)	358
AspS9I	GGNCC	2 cut(s)	110, 132
AsuHPI	GGTGA	1 cut(s)	169
AvaI	CYCGRG	1 cut(s)	152
AvaII	GGWCC	1 cut(s)	110
BaeGI	GKGCMC	1 cut(s)	127
Bbv12I	GWGCWC	1 cut(s)	127
BccI	CCATC	2 cut(s)	390, 403
BceAI	ACGGC	1 cut(s)	62
BciT130I	CCWGG	1 cut(s)	130
BcoDI	GTCTC	1 cut(s)	187
BfaI	CTAG	1 cut(s)	306
BglII	AGATCT	1 cut(s)	347
Bme1390I	CCNGG	1 cut(s)	130
Bme18I	GGWCC	1 cut(s)	110
BmeT110I	CYCGRG	1 cut(s)	152
BmgT120I	GGNCC	2 cut(s)	110, 132
BmrFI	CCNGG	1 cut(s)	130
BmsI	GCATC	2 cut(s)	15, 88
BsaJI	CCNNGG	3 cut(s)	128, 153, 241
Bsc4I	CCNNNNNNNGG	3 cut(s)	119, 229, 247
Bse1I	ACTGG	1 cut(s)	113
Bse3DI	GCAATG	1 cut(s)	279
BseBI	CCWGG	1 cut(s)	130
BseDI	CCNNGG	3 cut(s)	128, 153, 241
BseGI	GGATG	1 cut(s)	298
BseLI	CCNNNNNNNGG	3 cut(s)	119, 229, 247
BseMI	GCAATG	1 cut(s)	279
BseNI	ACTGG	1 cut(s)	113
BseRI	GAGGAG	2 cut(s)	32, 35
BseSI	GKGCMC	1 cut(s)	127
BshFI	GGCC	2 cut(s)	133, 240
BsiHKAI	GWGCWC	1 cut(s)	127
BsiHKCI	CYCGRG	1 cut(s)	152
BslI	CCNNNNNNNGG	3 cut(s)	119, 229, 247
BsmAI	GTCTC	1 cut(s)	187
BsnI	GGCC	2 cut(s)	133, 240
BsoBI	CYCGRG	1 cut(s)	152
Bsp1286I	GDGCHC	1 cut(s)	127
Bsp143I	GATC	3 cut(s)	165, 271, 347
BspACI	CCGC	2 cut(s)	11, 284
BspANI	GGCC	2 cut(s)	133, 240
BsrDI	GCAATG	1 cut(s)	279
BsrI	ACTGG	1 cut(s)	113
BssECI	CCNNGG	3 cut(s)	128, 153, 241
BssMI	GATC	3 cut(s)	165, 271, 347
BssT1I	CCWWGG	1 cut(s)	241
Bst2UI	CCWGG	1 cut(s)	130
BstC8I	GCNNGC	2 cut(s)	15, 75
BstENI	CCTNNNNNAGG	1 cut(s)	245
BstF5I	GGATG	1 cut(s)	298
BstKTI	GATC	3 cut(s)	168, 274, 350
BstMAI	GTCTC	1 cut(s)	187
BstMBI	GATC	3 cut(s)	165, 271, 347
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 83, 176
BstNI	CCWGG	1 cut(s)	130
BstSCI	CCNGG	1 cut(s)	128
BstSLI	GKGCMC	1 cut(s)	127
BstX2I	RGATCY	1 cut(s)	347
BstYI	RGATCY	1 cut(s)	347
BsuRI	GGCC	2 cut(s)	133, 240
BtsCI	GGATG	1 cut(s)	298
BtsIMutI	CAGTG	2 cut(s)	120, 241
Cac8I	GCNNGC	2 cut(s)	15, 75
Cfr13I	GGNCC	2 cut(s)	110, 132
CseI	GACGC	1 cut(s)	17
CviAII	CATG	1 cut(s)	19
CviJI	RGCY	4 cut(s)	17, 133, 240, 312
CviKI_1	RGCY	4 cut(s)	17, 133, 240, 312
DpnI	GATC	3 cut(s)	167, 273, 349
DpnII	GATC	3 cut(s)	165, 271, 347
Eco130I	CCWWGG	1 cut(s)	241
Eco47I	GGWCC	1 cut(s)	110
Eco88I	CYCGRG	1 cut(s)	152
EcoNI	CCTNNNNNAGG	1 cut(s)	245
EcoRII	CCWGG	1 cut(s)	128
EcoT14I	CCWWGG	1 cut(s)	241
ErhI	CCWWGG	1 cut(s)	241
FaeI	CATG	1 cut(s)	22
FaiI	YATR	4 cut(s)	20, 270, 327, 336
FatI	CATG	1 cut(s)	18
FokI	GGATG	1 cut(s)	305
FspBI	CTAG	1 cut(s)	306
HaeIII	GGCC	2 cut(s)	133, 240
HgaI	GACGC	1 cut(s)	17
Hin1II	CATG	1 cut(s)	22
HincII	GTYRAC	1 cut(s)	139
HindII	GTYRAC	1 cut(s)	139
HinfI	GANTC	3 cut(s)	200, 296, 374
HpaI	GTTAAC	1 cut(s)	139
HphI	GGTGA	1 cut(s)	169
Hpy166II	GTNNAC	2 cut(s)	125, 139
Hpy188I	TCNGA	1 cut(s)	187
Hpy188III	TCNNGA	3 cut(s)	223, 248, 364
Hpy8I	GTNNAC	2 cut(s)	125, 139
HpyAV	CCTTC	3 cut(s)	103, 115, 388
HpyCH4IV	ACGT	2 cut(s)	212, 252
HpyCH4V	TGCA	1 cut(s)	125
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 83, 176
HpySE526I	ACGT	2 cut(s)	212, 252
Hsp92II	CATG	1 cut(s)	22
KspAI	GTTAAC	1 cut(s)	139
Kzo9I	GATC	3 cut(s)	165, 271, 347
LweI	GCATC	2 cut(s)	15, 88
MaeI	CTAG	1 cut(s)	306
MaeII	ACGT	2 cut(s)	212, 252
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	3 cut(s)	167, 273, 349
MboI	GATC	3 cut(s)	165, 271, 347
MboII	GAAGA	1 cut(s)	383
MfeI	CAATTG	1 cut(s)	315
MflI	RGATCY	1 cut(s)	347
MhlI	GDGCHC	1 cut(s)	127
MluCI	AATT	3 cut(s)	315, 322, 358
MlyI	GAGTC	1 cut(s)	305
MnlI	CCTC	5 cut(s)	50, 53, 56, 62, 148
MseI	TTAA	2 cut(s)	138, 403
MslI	CAYNNNNRTG	1 cut(s)	23
MspR9I	CCNGG	1 cut(s)	130
MunI	CAATTG	1 cut(s)	315
MvaI	CCWGG	1 cut(s)	130
MwoI	GCNNNNNNNGC	3 cut(s)	10, 83, 176
NdeII	GATC	3 cut(s)	165, 271, 347
NlaIII	CATG	1 cut(s)	22
NmeAIII	GCCGAG	1 cut(s)	196
NmuCI	GTSAC	1 cut(s)	262
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PfeI	GAWTC	2 cut(s)	200, 374
PflMI	CCANNNNNTGG	2 cut(s)	119, 229
PleI	GAGTC	1 cut(s)	304
PpsI	GAGTC	1 cut(s)	304
Psp1406I	AACGTT	1 cut(s)	212
Psp6I	CCWGG	1 cut(s)	128
PspGI	CCWGG	1 cut(s)	128
PspPI	GGNCC	2 cut(s)	110, 132
PsuI	RGATCY	1 cut(s)	347
RseI	CAYNNNNRTG	1 cut(s)	23
SaqAI	TTAA	2 cut(s)	138, 403
Sau3AI	GATC	3 cut(s)	165, 271, 347
Sau96I	GGNCC	2 cut(s)	110, 132
SchI	GAGTC	1 cut(s)	305
ScrFI	CCNGG	1 cut(s)	130
SduI	GDGCHC	1 cut(s)	127
SetI	ASST	3 cut(s)	159, 215, 255
SfaNI	GCATC	2 cut(s)	15, 88
SinI	GGWCC	1 cut(s)	110
SmiMI	CAYNNNNRTG	1 cut(s)	23
Sse9I	AATT	3 cut(s)	315, 322, 358
SsiI	CCGC	2 cut(s)	11, 284
SspMI	CTAG	1 cut(s)	306
StyD4I	CCNGG	1 cut(s)	128
StyI	CCWWGG	1 cut(s)	241
TaiI	ACGT	2 cut(s)	215, 255
TaqI	TCGA	1 cut(s)	96
TaqII	GACCGA	1 cut(s)	98
TasI	AATT	3 cut(s)	315, 322, 358
TfiI	GAWTC	2 cut(s)	200, 374
Tru1I	TTAA	2 cut(s)	138, 403
Tru9I	TTAA	2 cut(s)	138, 403
TscAI	CASTG	2 cut(s)	120, 241
TseFI	GTSAC	1 cut(s)	262
Tsp45I	GTSAC	1 cut(s)	262
TspRI	CASTG	2 cut(s)	120, 241
Van91I	CCANNNNNTGG	2 cut(s)	119, 229
VneI	GTGCAC	1 cut(s)	123
VpaK11BI	GGWCC	1 cut(s)	110
XagI	CCTNNNNNAGG	1 cut(s)	245
XapI	RAATTY	1 cut(s)	358
XspI	CTAG	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.