Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0016834

Physical Location & Seq

Genomic Coordinates Forward (+)

6590459 .. 6590910

Gene Structure 452 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG077700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGCCCCAACCGCAAGCCATCATGATGCGTCCAATCTGCCTCCTCCTCTCCCTCTTTCTCTTTGGTTTTGTCCTTGCCGTTGGTGCTGTTTCCTTCGATGCTTCCTTCGGTCCACTAATTGGTGCACGCCGGCCCGTTAACATCAACGACCCCGAGGTGAAAGAGAACGCCGAGTTCGCTGTCTCCGAGTTCAATAGGCAATCCGGGAAAACGTTGGTGTTCCAGAAAGTGGTCAGTGGCCTTGATCAGGTCGTAGAAGGAATGAGTTATTATCTTGTCATTGCGGTCAAGGATGAGTCCTTGCCTGCTAGCCCAATTCTGAATTATGAGTGTCATGTCTGGGATAGACCTTGGCTGAATTTCAGGAAACTGGAATCCTTCCATCAAGTTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

131

Amino Acids

14.75

Weight (kDa)

5.62

Isoelectric Point (pI)

54.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cystatin	PF00031	44 - 130	9.8e-14	Cystatin domain
SQAPI	PF16845	47 - 130	5.4e-26	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016834)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g30060 FvH4_4g30070
rosa_chinensis	RchiOBHm_Chr5g0010541 RchiOBHm_Chr5g0010601
rosa_laevigata	RLG00000031760
rosa_multiflora	Rmu_sc0001429.1_g000003
rosa_roxburghii	Rroxscaffold_1G00065790
rosa_rugosa	Rorug04G0450800
rosa_samantha	Rh5BG077700 Rh5CG090600 Rh5DG077800 Rh5DG078100
rosa_wichuraiana	Rw0G000730 Rw0G021900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	119, 229
AciI	CCGC	2 cut(s)	11, 284
AclI	AACGTT	1 cut(s)	212
AcsI	RAATTY	1 cut(s)	358
AfiI	CCNNNNNNNGG	3 cut(s)	119, 229, 247
AgsI	TTSAA	1 cut(s)	193
Alw21I	GWGCWC	1 cut(s)	127
Alw26I	GTCTC	1 cut(s)	187
Alw44I	GTGCAC	1 cut(s)	123
Ama87I	CYCGRG	1 cut(s)	152
AoxI	GGCC	2 cut(s)	131, 238
ApaLI	GTGCAC	1 cut(s)	123
ApoI	RAATTY	1 cut(s)	358
AspS9I	GGNCC	2 cut(s)	110, 132
AsuC2I	CCSGG	1 cut(s)	205
AsuHPI	GGTGA	1 cut(s)	169
AsuNHI	GCTAGC	1 cut(s)	308
AvaI	CYCGRG	1 cut(s)	152
AvaII	GGWCC	1 cut(s)	110
BaeGI	GKGCMC	1 cut(s)	127
Bbv12I	GWGCWC	1 cut(s)	127
BccI	CCATC	2 cut(s)	26, 390
BceAI	ACGGC	1 cut(s)	62
BclI	TGATCA	1 cut(s)	244
BcnI	CCSGG	1 cut(s)	205
BcoDI	GTCTC	1 cut(s)	187
BfaI	CTAG	1 cut(s)	309
Bme1390I	CCNGG	1 cut(s)	205
Bme18I	GGWCC	1 cut(s)	110
BmeT110I	CYCGRG	1 cut(s)	152
BmgT120I	GGNCC	2 cut(s)	110, 132
BmrFI	CCNGG	1 cut(s)	205
BmsI	GCATC	2 cut(s)	15, 88
BmtI	GCTAGC	1 cut(s)	312
BpuMI	CCSGG	1 cut(s)	205
BsaJI	CCNNGG	2 cut(s)	153, 350
Bsc4I	CCNNNNNNNGG	3 cut(s)	119, 229, 247
Bse118I	RCCGGY	1 cut(s)	129
Bse1I	ACTGG	1 cut(s)	375
Bse3DI	GCAATG	1 cut(s)	279
BseDI	CCNNGG	2 cut(s)	153, 350
BseGI	GGATG	1 cut(s)	298
BseLI	CCNNNNNNNGG	3 cut(s)	119, 229, 247
BseMI	GCAATG	1 cut(s)	279
BseNI	ACTGG	1 cut(s)	375
BseRI	GAGGAG	2 cut(s)	32, 35
BseSI	GKGCMC	1 cut(s)	127
BshFI	GGCC	2 cut(s)	133, 240
BsiHKAI	GWGCWC	1 cut(s)	127
BsiHKCI	CYCGRG	1 cut(s)	152
BsiSI	CCGG	2 cut(s)	130, 204
BslI	CCNNNNNNNGG	3 cut(s)	119, 229, 247
BsmAI	GTCTC	1 cut(s)	187
BsnI	GGCC	2 cut(s)	133, 240
BsoBI	CYCGRG	1 cut(s)	152
Bsp1286I	GDGCHC	1 cut(s)	127
Bsp143I	GATC	1 cut(s)	244
BspACI	CCGC	2 cut(s)	11, 284
BspANI	GGCC	2 cut(s)	133, 240
BspHI	TCATGA	1 cut(s)	21
BspOI	GCTAGC	1 cut(s)	312
BsrDI	GCAATG	1 cut(s)	279
BsrFI	RCCGGY	1 cut(s)	129
BsrI	ACTGG	1 cut(s)	375
BssAI	RCCGGY	1 cut(s)	129
BssECI	CCNNGG	2 cut(s)	153, 350
BssMI	GATC	1 cut(s)	244
BssT1I	CCWWGG	1 cut(s)	350
BstC8I	GCNNGC	5 cut(s)	15, 127, 131, 306, 310
BstENI	CCTNNNNNAGG	1 cut(s)	245
BstF5I	GGATG	1 cut(s)	298
BstKTI	GATC	1 cut(s)	247
BstMAI	GTCTC	1 cut(s)	187
BstMBI	GATC	1 cut(s)	244
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 83, 176
BstSCI	CCNGG	1 cut(s)	203
BstSLI	GKGCMC	1 cut(s)	127
BsuRI	GGCC	2 cut(s)	133, 240
BtsCI	GGATG	1 cut(s)	298
BtsIMutI	CAGTG	1 cut(s)	241
Cac8I	GCNNGC	5 cut(s)	15, 127, 131, 306, 310
CciI	TCATGA	1 cut(s)	21
Cfr10I	RCCGGY	1 cut(s)	129
Cfr13I	GGNCC	2 cut(s)	110, 132
CseI	GACGC	1 cut(s)	17
CviAII	CATG	2 cut(s)	22, 335
CviJI	RGCY	5 cut(s)	17, 133, 240, 312, 355
CviKI_1	RGCY	5 cut(s)	17, 133, 240, 312, 355
DpnI	GATC	1 cut(s)	246
DpnII	GATC	1 cut(s)	244
Eco130I	CCWWGG	1 cut(s)	350
Eco47I	GGWCC	1 cut(s)	110
Eco88I	CYCGRG	1 cut(s)	152
EcoNI	CCTNNNNNAGG	1 cut(s)	245
EcoT14I	CCWWGG	1 cut(s)	350
ErhI	CCWWGG	1 cut(s)	350
FaeI	CATG	2 cut(s)	25, 338
FaiI	YATR	3 cut(s)	23, 327, 336
FatI	CATG	2 cut(s)	21, 334
FbaI	TGATCA	1 cut(s)	244
FokI	GGATG	1 cut(s)	305
FspBI	CTAG	1 cut(s)	309
HaeIII	GGCC	2 cut(s)	133, 240
HapII	CCGG	2 cut(s)	130, 204
HgaI	GACGC	1 cut(s)	17
Hin1II	CATG	2 cut(s)	25, 338
HincII	GTYRAC	1 cut(s)	139
HindII	GTYRAC	1 cut(s)	139
HinfI	GANTC	2 cut(s)	296, 374
HpaI	GTTAAC	1 cut(s)	139
HpaII	CCGG	2 cut(s)	130, 204
HphI	GGTGA	1 cut(s)	169
Hpy166II	GTNNAC	3 cut(s)	113, 125, 139
Hpy188I	TCNGA	2 cut(s)	187, 321
Hpy188III	TCNNGA	3 cut(s)	22, 223, 364
Hpy8I	GTNNAC	3 cut(s)	113, 125, 139
HpyAV	CCTTC	4 cut(s)	103, 115, 251, 388
HpyCH4IV	ACGT	1 cut(s)	212
HpyCH4V	TGCA	1 cut(s)	125
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 83, 176
HpySE526I	ACGT	1 cut(s)	212
Hsp92II	CATG	2 cut(s)	25, 338
KroI	GCCGGC	1 cut(s)	129
KroNI	GCCGGC	1 cut(s)	131
Ksp22I	TGATCA	1 cut(s)	244
KspAI	GTTAAC	1 cut(s)	139
Kzo9I	GATC	1 cut(s)	244
LpnPI	CCDG	8 cut(s)	143, 217, 233, 236, 318, 325, 349, 356
LweI	GCATC	2 cut(s)	15, 88
MaeI	CTAG	1 cut(s)	309
MaeII	ACGT	1 cut(s)	212
MalI	GATC	1 cut(s)	246
MboI	GATC	1 cut(s)	244
MhlI	GDGCHC	1 cut(s)	127
MluCI	AATT	5 cut(s)	117, 315, 322, 358, 391
MlyI	GAGTC	1 cut(s)	305
MnlI	CCTC	5 cut(s)	50, 53, 56, 62, 148
MroNI	GCCGGC	1 cut(s)	129
MseI	TTAA	2 cut(s)	138, 390
MslI	CAYNNNNRTG	1 cut(s)	23
MspI	CCGG	2 cut(s)	130, 204
MspR9I	CCNGG	1 cut(s)	205
MwoI	GCNNNNNNNGC	3 cut(s)	10, 83, 176
NaeI	GCCGGC	1 cut(s)	131
NciI	CCSGG	1 cut(s)	205
NdeII	GATC	1 cut(s)	244
NgoMIV	GCCGGC	1 cut(s)	129
NheI	GCTAGC	1 cut(s)	308
NlaIII	CATG	2 cut(s)	25, 338
NmeAIII	GCCGAG	1 cut(s)	196
PagI	TCATGA	1 cut(s)	21
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PdiI	GCCGGC	1 cut(s)	131
PfeI	GAWTC	1 cut(s)	374
PflMI	CCANNNNNTGG	2 cut(s)	119, 229
PfoI	TCCNGGA	1 cut(s)	203
PleI	GAGTC	1 cut(s)	304
PpsI	GAGTC	1 cut(s)	304
Psp1406I	AACGTT	1 cut(s)	212
PspPI	GGNCC	2 cut(s)	110, 132
RseI	CAYNNNNRTG	1 cut(s)	23
SaqAI	TTAA	2 cut(s)	138, 390
Sau3AI	GATC	1 cut(s)	244
Sau96I	GGNCC	2 cut(s)	110, 132
SchI	GAGTC	1 cut(s)	305
ScrFI	CCNGG	1 cut(s)	205
SduI	GDGCHC	1 cut(s)	127
SetI	ASST	4 cut(s)	159, 215, 252, 352
SfaNI	GCATC	2 cut(s)	15, 88
SinI	GGWCC	1 cut(s)	110
SmiMI	CAYNNNNRTG	1 cut(s)	23
Sse9I	AATT	5 cut(s)	117, 315, 322, 358, 391
SsiI	CCGC	2 cut(s)	11, 284
SspMI	CTAG	1 cut(s)	309
StyD4I	CCNGG	1 cut(s)	203
StyI	CCWWGG	1 cut(s)	350
TaiI	ACGT	1 cut(s)	215
TaqI	TCGA	1 cut(s)	96
TaqII	GACCGA	1 cut(s)	98
TasI	AATT	5 cut(s)	117, 315, 322, 358, 391
TfiI	GAWTC	1 cut(s)	374
Tru1I	TTAA	2 cut(s)	138, 390
Tru9I	TTAA	2 cut(s)	138, 390
TscAI	CASTG	1 cut(s)	241
TspRI	CASTG	1 cut(s)	241
Van91I	CCANNNNNTGG	2 cut(s)	119, 229
VneI	GTGCAC	1 cut(s)	123
VpaK11BI	GGWCC	1 cut(s)	110
XagI	CCTNNNNNAGG	1 cut(s)	245
XapI	RAATTY	1 cut(s)	358
XspI	CTAG	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.