Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001429.1

Orthogroup ID

OG0016834

Physical Location & Seq

Genomic Coordinates Forward (+)

17666 .. 18151

Gene Structure 486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001429.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ctgagtaacctctttctctttggttttctcctcgccgttggtgctgtttccttcaatgcttctttcagtccagtaattggtgcacgctggcccgttaacatcaacgaccccgaggtgaaagagatcgccgagttcgctgtctccgagttctttggttttctcctcgccgttggtgctgtttccttcaatgcttctttcggtccagtaattggtgcacgctggcccgttaacatcaacgaccccgaggtgaaagagatcgccgagttcgctgtctccgagttcaataaggaatctgggaaaacgttggtgttccagaaagtggtcagtggccttggtcaggacgtagcaggagtgacttatgatcttgtcattgcggtcagggatgagtccttgcctagtagcccaattgtgaattatgcgtgttatgtctgggaaagatcttgggagaatttcaggaaacttgaatccttccatcaagttaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

161

Amino Acids

17.71

Weight (kDa)

4.66

Isoelectric Point (pI)

50.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016834)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g30060 FvH4_4g30070
rosa_chinensis	RchiOBHm_Chr5g0010541 RchiOBHm_Chr5g0010601
rosa_laevigata	RLG00000031760
rosa_multiflora	Rmu_sc0001429.1_g000003
rosa_roxburghii	Rroxscaffold_1G00065790
rosa_rugosa	Rorug04G0450800
rosa_samantha	Rh5BG077700 Rh5CG090600 Rh5DG077800 Rh5DG078100
rosa_wichuraiana	Rw0G000730 Rw0G021900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	77, 209, 319
AciI	CCGC	1 cut(s)	374
AclI	AACGTT	1 cut(s)	302
AcsI	RAATTY	1 cut(s)	448
AfiI	CCNNNNNNNGG	4 cut(s)	77, 209, 319, 337
AgsI	TTSAA	4 cut(s)	55, 187, 283, 464
Alw21I	GWGCWC	2 cut(s)	85, 217
Alw26I	GTCTC	2 cut(s)	145, 277
Alw44I	GTGCAC	2 cut(s)	81, 213
Ama87I	CYCGRG	2 cut(s)	110, 242
AoxI	GGCC	3 cut(s)	89, 221, 328
ApaLI	GTGCAC	2 cut(s)	81, 213
ApoI	RAATTY	1 cut(s)	448
AspS9I	GGNCC	3 cut(s)	90, 200, 222
AsuHPI	GGTGA	2 cut(s)	127, 259
AvaI	CYCGRG	2 cut(s)	110, 242
AvaII	GGWCC	1 cut(s)	200
BaeGI	GKGCMC	2 cut(s)	85, 217
Bbv12I	GWGCWC	2 cut(s)	85, 217
BccI	CCATC	1 cut(s)	480
BceAI	ACGGC	2 cut(s)	20, 152
BcoDI	GTCTC	2 cut(s)	145, 277
BfaI	CTAG	1 cut(s)	396
BglII	AGATCT	1 cut(s)	437
Bme18I	GGWCC	1 cut(s)	200
BmeT110I	CYCGRG	2 cut(s)	110, 242
BmgT120I	GGNCC	3 cut(s)	90, 200, 222
BsaJI	CCNNGG	3 cut(s)	111, 243, 331
Bsc4I	CCNNNNNNNGG	4 cut(s)	77, 209, 319, 337
Bse1I	ACTGG	2 cut(s)	71, 203
Bse3DI	GCAATG	1 cut(s)	369
BseDI	CCNNGG	3 cut(s)	111, 243, 331
BseGI	GGATG	1 cut(s)	388
BseLI	CCNNNNNNNGG	4 cut(s)	77, 209, 319, 337
BseMI	GCAATG	1 cut(s)	369
BseNI	ACTGG	2 cut(s)	71, 203
BseRI	GAGGAG	2 cut(s)	20, 152
BseSI	GKGCMC	2 cut(s)	85, 217
BshFI	GGCC	3 cut(s)	91, 223, 330
BsiHKAI	GWGCWC	2 cut(s)	85, 217
BsiHKCI	CYCGRG	2 cut(s)	110, 242
BslI	CCNNNNNNNGG	4 cut(s)	77, 209, 319, 337
BsmAI	GTCTC	2 cut(s)	145, 277
BsnI	GGCC	3 cut(s)	91, 223, 330
BsoBI	CYCGRG	2 cut(s)	110, 242
Bsp1286I	GDGCHC	2 cut(s)	85, 217
Bsp143I	GATC	4 cut(s)	123, 255, 361, 437
BspACI	CCGC	1 cut(s)	374
BspANI	GGCC	3 cut(s)	91, 223, 330
BsrDI	GCAATG	1 cut(s)	369
BsrI	ACTGG	2 cut(s)	71, 203
BssECI	CCNNGG	3 cut(s)	111, 243, 331
BssMI	GATC	4 cut(s)	123, 255, 361, 437
BssT1I	CCWWGG	1 cut(s)	331
BstC8I	GCNNGC	4 cut(s)	85, 89, 217, 221
BstDEI	CTNAG	1 cut(s)	2
BstENI	CCTNNNNNAGG	1 cut(s)	335
BstF5I	GGATG	1 cut(s)	388
BstKTI	GATC	4 cut(s)	126, 258, 364, 440
BstMAI	GTCTC	2 cut(s)	145, 277
BstMBI	GATC	4 cut(s)	123, 255, 361, 437
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 134, 173, 266
BstSLI	GKGCMC	2 cut(s)	85, 217
BstX2I	RGATCY	1 cut(s)	437
BstYI	RGATCY	1 cut(s)	437
BsuRI	GGCC	3 cut(s)	91, 223, 330
BtsCI	GGATG	1 cut(s)	388
BtsIMutI	CAGTG	1 cut(s)	331
Cac8I	GCNNGC	4 cut(s)	85, 89, 217, 221
Cfr13I	GGNCC	3 cut(s)	90, 200, 222
CviJI	RGCY	4 cut(s)	91, 223, 330, 402
CviKI_1	RGCY	4 cut(s)	91, 223, 330, 402
DdeI	CTNAG	1 cut(s)	2
DpnI	GATC	4 cut(s)	125, 257, 363, 439
DpnII	GATC	4 cut(s)	123, 255, 361, 437
Eco130I	CCWWGG	1 cut(s)	331
Eco47I	GGWCC	1 cut(s)	200
Eco88I	CYCGRG	2 cut(s)	110, 242
EcoNI	CCTNNNNNAGG	1 cut(s)	335
EcoT14I	CCWWGG	1 cut(s)	331
ErhI	CCWWGG	1 cut(s)	331
FaiI	YATR	3 cut(s)	360, 417, 426
FokI	GGATG	1 cut(s)	395
FspBI	CTAG	1 cut(s)	396
HaeIII	GGCC	3 cut(s)	91, 223, 330
HincII	GTYRAC	2 cut(s)	97, 229
HindII	GTYRAC	2 cut(s)	97, 229
HinfI	GANTC	3 cut(s)	290, 386, 464
HpaI	GTTAAC	2 cut(s)	97, 229
HphI	GGTGA	2 cut(s)	127, 259
Hpy166II	GTNNAC	4 cut(s)	83, 97, 215, 229
Hpy188I	TCNGA	2 cut(s)	145, 277
Hpy188III	TCNNGA	3 cut(s)	313, 338, 454
Hpy8I	GTNNAC	4 cut(s)	83, 97, 215, 229
HpyAV	CCTTC	3 cut(s)	61, 193, 478
HpyCH4IV	ACGT	2 cut(s)	302, 342
HpyCH4V	TGCA	2 cut(s)	83, 215
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 134, 173, 266
HpyF3I	CTNAG	1 cut(s)	2
HpySE526I	ACGT	2 cut(s)	302, 342
KspAI	GTTAAC	2 cut(s)	97, 229
Kzo9I	GATC	4 cut(s)	123, 255, 361, 437
MaeI	CTAG	1 cut(s)	396
MaeII	ACGT	2 cut(s)	302, 342
MaeIII	GTNAC	2 cut(s)	5, 352
MalI	GATC	4 cut(s)	125, 257, 363, 439
MboI	GATC	4 cut(s)	123, 255, 361, 437
MfeI	CAATTG	1 cut(s)	405
MflI	RGATCY	1 cut(s)	437
MhlI	GDGCHC	2 cut(s)	85, 217
MluCI	AATT	6 cut(s)	75, 207, 405, 412, 448, 481
MlyI	GAGTC	1 cut(s)	395
MnlI	CCTC	5 cut(s)	20, 41, 106, 173, 238
MseI	TTAA	4 cut(s)	96, 228, 480, 484
MunI	CAATTG	1 cut(s)	405
MwoI	GCNNNNNNNGC	4 cut(s)	41, 134, 173, 266
NdeII	GATC	4 cut(s)	123, 255, 361, 437
NmeAIII	GCCGAG	2 cut(s)	154, 286
NmuCI	GTSAC	1 cut(s)	352
PacI	TTAATTAA	1 cut(s)	484
PcsI	WCGNNNNNNNCGW	2 cut(s)	141, 273
PfeI	GAWTC	2 cut(s)	290, 464
PflMI	CCANNNNNTGG	3 cut(s)	77, 209, 319
PleI	GAGTC	1 cut(s)	394
PpsI	GAGTC	1 cut(s)	394
Psp1406I	AACGTT	1 cut(s)	302
PspPI	GGNCC	3 cut(s)	90, 200, 222
PsuI	RGATCY	1 cut(s)	437
SaqAI	TTAA	4 cut(s)	96, 228, 480, 484
Sau3AI	GATC	4 cut(s)	123, 255, 361, 437
Sau96I	GGNCC	3 cut(s)	90, 200, 222
SchI	GAGTC	1 cut(s)	395
SduI	GDGCHC	2 cut(s)	85, 217
SetI	ASST	5 cut(s)	12, 117, 249, 305, 345
SinI	GGWCC	1 cut(s)	200
Sse9I	AATT	6 cut(s)	75, 207, 405, 412, 448, 481
SsiI	CCGC	1 cut(s)	374
SspMI	CTAG	1 cut(s)	396
StyI	CCWWGG	1 cut(s)	331
TaiI	ACGT	2 cut(s)	305, 345
TaqII	GACCGA	1 cut(s)	188
TasI	AATT	6 cut(s)	75, 207, 405, 412, 448, 481
TfiI	GAWTC	2 cut(s)	290, 464
Tru1I	TTAA	4 cut(s)	96, 228, 480, 484
Tru9I	TTAA	4 cut(s)	96, 228, 480, 484
TscAI	CASTG	1 cut(s)	331
TseFI	GTSAC	1 cut(s)	352
Tsp45I	GTSAC	1 cut(s)	352
TspRI	CASTG	1 cut(s)	331
Van91I	CCANNNNNTGG	3 cut(s)	77, 209, 319
VneI	GTGCAC	2 cut(s)	81, 213
VpaK11BI	GGWCC	1 cut(s)	200
XagI	CCTNNNNNAGG	1 cut(s)	335
XapI	RAATTY	1 cut(s)	448
XspI	CTAG	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.