Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0016834

Physical Location & Seq

Genomic Coordinates Reverse (-)

87381608 .. 87381982

Gene Structure 375 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00065790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGATGCGTCCAATCTGCCTCCTCCTCTCCCTCTTTCTCTTTGGTTTTCTCCTCGCCGTTGGTGCCGTTTCCTTCGATGCTTCCTTCGGTCCACTACTTGGTGCACGCCAGCCCGTTGACATCAACGACCCCGAGGTGAAAGAGAACGCCGAGTTCGCTGTCTCCGAGTTCAATAAGCAATCCGGGAAAACGTTGGTGTTCCAGAAAGTGGTCAGTGGCCTTGATCAGGTCGTAGAAGGAATTAGTTATTATCTTGTCATTGCGGTCAGGGATGAGTCCTTGCCTACTAGCCCAATTCTGAATTATGAGTGTCATGTCTGGGATAGACCTTGGCTGAATTTCAGGAAACTGGAATCCTTCCATCAAGTTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010029 GO:0010030 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030312 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034605 GO:0043086 GO:0044092 GO:0044464 GO:0045861 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1900140 GO:2000026 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

124

Amino Acids

13.98

Weight (kDa)

5.04

Isoelectric Point (pI)

37.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cystatin	PF00031	37 - 123	3.5e-13	Cystatin domain
SQAPI	PF16845	40 - 123	4.2e-26	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016834)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g30060 FvH4_4g30070
rosa_chinensis	RchiOBHm_Chr5g0010541 RchiOBHm_Chr5g0010601
rosa_laevigata	RLG00000031760
rosa_multiflora	Rmu_sc0001429.1_g000003
rosa_roxburghii	Rroxscaffold_1G00065790
rosa_rugosa	Rorug04G0450800
rosa_samantha	Rh5BG077700 Rh5CG090600 Rh5DG077800 Rh5DG078100
rosa_wichuraiana	Rw0G000730 Rw0G021900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	62
AccB7I	CCANNNNNTGG	2 cut(s)	98, 208
AciI	CCGC	1 cut(s)	263
AclI	AACGTT	1 cut(s)	191
AcsI	RAATTY	1 cut(s)	337
AfiI	CCNNNNNNNGG	3 cut(s)	98, 208, 226
AgsI	TTSAA	1 cut(s)	172
Alw21I	GWGCWC	1 cut(s)	106
Alw26I	GTCTC	1 cut(s)	166
Alw44I	GTGCAC	1 cut(s)	102
Ama87I	CYCGRG	1 cut(s)	131
AoxI	GGCC	1 cut(s)	217
ApaLI	GTGCAC	1 cut(s)	102
ApoI	RAATTY	1 cut(s)	337
AspS9I	GGNCC	1 cut(s)	89
AsuC2I	CCSGG	1 cut(s)	184
AsuHPI	GGTGA	1 cut(s)	148
AvaI	CYCGRG	1 cut(s)	131
AvaII	GGWCC	1 cut(s)	89
BaeGI	GKGCMC	1 cut(s)	106
BanI	GGYRCC	1 cut(s)	62
Bbv12I	GWGCWC	1 cut(s)	106
BccI	CCATC	1 cut(s)	369
BceAI	ACGGC	2 cut(s)	41, 50
BclI	TGATCA	1 cut(s)	223
BcnI	CCSGG	1 cut(s)	184
BcoDI	GTCTC	1 cut(s)	166
BfaI	CTAG	1 cut(s)	288
Bme1390I	CCNGG	1 cut(s)	184
Bme18I	GGWCC	1 cut(s)	89
BmeT110I	CYCGRG	1 cut(s)	131
BmgT120I	GGNCC	1 cut(s)	89
BmiI	GGNNCC	1 cut(s)	64
BmrFI	CCNGG	1 cut(s)	184
BmsI	GCATC	1 cut(s)	67
BpuMI	CCSGG	1 cut(s)	184
BsaJI	CCNNGG	2 cut(s)	132, 329
Bsc4I	CCNNNNNNNGG	3 cut(s)	98, 208, 226
Bse1I	ACTGG	1 cut(s)	354
Bse3DI	GCAATG	1 cut(s)	258
BseDI	CCNNGG	2 cut(s)	132, 329
BseGI	GGATG	1 cut(s)	277
BseLI	CCNNNNNNNGG	3 cut(s)	98, 208, 226
BseMI	GCAATG	1 cut(s)	258
BseNI	ACTGG	1 cut(s)	354
BseRI	GAGGAG	3 cut(s)	11, 14, 41
BseSI	GKGCMC	1 cut(s)	106
BshFI	GGCC	1 cut(s)	219
BshNI	GGYRCC	1 cut(s)	62
BsiHKAI	GWGCWC	1 cut(s)	106
BsiHKCI	CYCGRG	1 cut(s)	131
BsiSI	CCGG	1 cut(s)	183
BslI	CCNNNNNNNGG	3 cut(s)	98, 208, 226
BsmAI	GTCTC	1 cut(s)	166
BsnI	GGCC	1 cut(s)	219
BsoBI	CYCGRG	1 cut(s)	131
Bsp1286I	GDGCHC	1 cut(s)	106
Bsp143I	GATC	1 cut(s)	223
BspACI	CCGC	1 cut(s)	263
BspANI	GGCC	1 cut(s)	219
BspLI	GGNNCC	1 cut(s)	64
BspT107I	GGYRCC	1 cut(s)	62
BsrDI	GCAATG	1 cut(s)	258
BsrI	ACTGG	1 cut(s)	354
BssECI	CCNNGG	2 cut(s)	132, 329
BssMI	GATC	1 cut(s)	223
BssT1I	CCWWGG	1 cut(s)	329
BstC8I	GCNNGC	2 cut(s)	106, 110
BstENI	CCTNNNNNAGG	1 cut(s)	224
BstF5I	GGATG	1 cut(s)	277
BstKTI	GATC	1 cut(s)	226
BstMAI	GTCTC	1 cut(s)	166
BstMBI	GATC	1 cut(s)	223
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 155
BstSCI	CCNGG	1 cut(s)	182
BstSLI	GKGCMC	1 cut(s)	106
BsuRI	GGCC	1 cut(s)	219
BtsCI	GGATG	1 cut(s)	277
BtsIMutI	CAGTG	1 cut(s)	220
Cac8I	GCNNGC	2 cut(s)	106, 110
Cfr13I	GGNCC	1 cut(s)	89
CviAII	CATG	1 cut(s)	314
CviJI	RGCY	4 cut(s)	112, 219, 291, 334
CviKI_1	RGCY	4 cut(s)	112, 219, 291, 334
DpnI	GATC	1 cut(s)	225
DpnII	GATC	1 cut(s)	223
Eco130I	CCWWGG	1 cut(s)	329
Eco47I	GGWCC	1 cut(s)	89
Eco88I	CYCGRG	1 cut(s)	131
EcoNI	CCTNNNNNAGG	1 cut(s)	224
EcoT14I	CCWWGG	1 cut(s)	329
ErhI	CCWWGG	1 cut(s)	329
FaeI	CATG	1 cut(s)	317
FaiI	YATR	2 cut(s)	306, 315
FatI	CATG	1 cut(s)	313
FbaI	TGATCA	1 cut(s)	223
FokI	GGATG	1 cut(s)	284
FspBI	CTAG	1 cut(s)	288
HaeIII	GGCC	1 cut(s)	219
HapII	CCGG	1 cut(s)	183
Hin1II	CATG	1 cut(s)	317
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HinfI	GANTC	2 cut(s)	275, 353
HpaII	CCGG	1 cut(s)	183
HphI	GGTGA	1 cut(s)	148
Hpy166II	GTNNAC	3 cut(s)	92, 104, 118
Hpy188I	TCNGA	2 cut(s)	166, 300
Hpy188III	TCNNGA	2 cut(s)	202, 343
Hpy8I	GTNNAC	3 cut(s)	92, 104, 118
HpyAV	CCTTC	4 cut(s)	82, 94, 230, 367
HpyCH4IV	ACGT	1 cut(s)	191
HpyCH4V	TGCA	1 cut(s)	104
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 155
HpySE526I	ACGT	1 cut(s)	191
Hsp92II	CATG	1 cut(s)	317
Ksp22I	TGATCA	1 cut(s)	223
Kzo9I	GATC	1 cut(s)	223
LpnPI	CCDG	8 cut(s)	122, 196, 212, 215, 253, 304, 328, 335
LweI	GCATC	1 cut(s)	67
MaeI	CTAG	1 cut(s)	288
MaeII	ACGT	1 cut(s)	191
MalI	GATC	1 cut(s)	225
MboI	GATC	1 cut(s)	223
MhlI	GDGCHC	1 cut(s)	106
MluCI	AATT	5 cut(s)	240, 294, 301, 337, 370
MlyI	GAGTC	1 cut(s)	284
MnlI	CCTC	6 cut(s)	29, 32, 35, 41, 62, 127
MseI	TTAA	1 cut(s)	369
MspI	CCGG	1 cut(s)	183
MspR9I	CCNGG	1 cut(s)	184
MwoI	GCNNNNNNNGC	2 cut(s)	62, 155
NciI	CCSGG	1 cut(s)	184
NdeII	GATC	1 cut(s)	223
NlaIII	CATG	1 cut(s)	317
NlaIV	GGNNCC	1 cut(s)	64
NmeAIII	GCCGAG	1 cut(s)	175
PcsI	WCGNNNNNNNCGW	1 cut(s)	162
PfeI	GAWTC	1 cut(s)	353
PflMI	CCANNNNNTGG	2 cut(s)	98, 208
PfoI	TCCNGGA	1 cut(s)	182
PleI	GAGTC	1 cut(s)	283
PpsI	GAGTC	1 cut(s)	283
Psp1406I	AACGTT	1 cut(s)	191
PspN4I	GGNNCC	1 cut(s)	64
PspPI	GGNCC	1 cut(s)	89
SaqAI	TTAA	1 cut(s)	369
Sau3AI	GATC	1 cut(s)	223
Sau96I	GGNCC	1 cut(s)	89
SchI	GAGTC	1 cut(s)	284
ScrFI	CCNGG	1 cut(s)	184
SduI	GDGCHC	1 cut(s)	106
SetI	ASST	4 cut(s)	138, 194, 231, 331
SfaNI	GCATC	1 cut(s)	67
SinI	GGWCC	1 cut(s)	89
Sse9I	AATT	5 cut(s)	240, 294, 301, 337, 370
SsiI	CCGC	1 cut(s)	263
SspMI	CTAG	1 cut(s)	288
StyD4I	CCNGG	1 cut(s)	182
StyI	CCWWGG	1 cut(s)	329
TaiI	ACGT	1 cut(s)	194
TaqI	TCGA	1 cut(s)	75
TaqII	GACCGA	1 cut(s)	77
TasI	AATT	5 cut(s)	240, 294, 301, 337, 370
TfiI	GAWTC	1 cut(s)	353
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TscAI	CASTG	1 cut(s)	220
TspRI	CASTG	1 cut(s)	220
Van91I	CCANNNNNTGG	2 cut(s)	98, 208
VneI	GTGCAC	1 cut(s)	102
VpaK11BI	GGWCC	1 cut(s)	89
XagI	CCTNNNNNAGG	1 cut(s)	224
XapI	RAATTY	1 cut(s)	337
XspI	CTAG	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.