FvH4_4g30730

Belongs to the argonaute family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
30215291 .. 30219391
4101 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g30730.t2

Sequence Viewer

Length: 1998 bp
ATGATCAAGCAAAAACTGGTGGAGGATAAATCAGCTTTGCTCTGTGGTGCTAGTCCTGCTTATGATGGCCGCAAGAATCTTTACAGTTCAATCGAATTCCAACATGATAAGCTTGAAATGTATGTAAGCCTCCCCATCCCTACAACCAAGCCAACCTTGCCATGTGGGGAATTTGGTGACTTTCAAGAGAAGGATCAAAGACTAAAACTTTTTCGTGTGAGCATCAAACTGGTTTCGAAGTTTGATGGAAAGGAATTGAGTAGTTACTTGAGCAAGGATGGAGATGAGTGGAAACCTATCCCTCAGGATTATCTCCATGCCTTAGATGTGGTTTTGAGAGAGAGTCCATTGGAGAAATGTATACCTGTGGGAAGATCACTTTATTCGAGTTCAATGGGAGGAACTAAAGACATTGGAGGAGGAGCTGTAGGATATAGAGGGTTCTTTCAGAGCCTTAGACCAACCCAACAAGGACTAGCTCTCAATGTTGATTTCTCCGTGACCGCTTTCCATGAAAGCATTGGAGTGATCCCATACTTGCAGAAGCGTCTTGAGTTTCTTCGGGACCTTCCTCAGAGGAAGACGAGGGGTTTAAGTAGTGAAGAAAGGAAAGAAGTGGAGAAGGCATTAAAGAACATCAGGGTCTTTGTTTGCCATAGAGAGACTGTCCAGAGATACCGAGTTTTTGGCTTAACCGAAGAAGCCACTGAGGATCTTTGGTTTCCAGACAGAGATGGGAAGAATTTGAGGCTGCTGACTTACTTCAAGGATCACTATAACTATGATATACAGTTCAGGAATTTGCCATGTTTGCAGATTAGTAGGAGTAAACCATGTTATCTTCCTATGGAACTATGTATGATCTGTGAAGGCCAGAAGTTCCTTGGGAAGCTTTCAGATGATCAGACTGCAAGGATACTTAAGATGGGCTGCCAAGGACCGAAAGAAAGAAAATCCATCATAGATGAAGTCATGAGAGGACCTGTCGGGCCAGTAAGTGGCATTCAAGAAAGGGAATTTAAACTCCATGTTTCTAGAGAAATGACGCAATTAAGTGGAAGAGTCCTTCAGCCTCCAAAACTAAAGCTTGGTGATGGTGGGCATGTAACAGACCTTATTCCTTCCCGCCATGATCGGCAGTGGAATCTTCTGGACAGCCATGTGTTTGAAGGAACTTGCATTGAGAGGTGGGCATTGATTAGTTTTGGTGGCACACCAGAACAGAAGCACTGCATTCCCAAATTCATACACCAGCTATCTCAAAGATGTGAACAACTGGGTATCTTTCTTAACAAGAACACAATTGTTAGCCCCCAATTCGAACCATTCCAAGTGCTTAACAATGTCTCCCTTTTAGAATCTAAGATTAAGAAAATCCAGCGAGCTGCATCAAACAATCTCCAGCTACTTATTTGTGTAATGGAAAGAAAACACAAAGGGTATGCAGACCTGAAGCGAATTGCTGATACAGGCGTTGGGGTCTTAACTCAATGCTGCTTGTACTCAAACCTTTGTAGATTGAGTTCGCAGTTTTTGGCTAACTTGGCTCTCAAGATCAATGCCAAAGTTGGAGGATGCACAGTTTCTCTGTACAACTCTTTGCCATCTCAAATCCCTCGGCTGCTTAAGAGTGATGAGCCAGTGATCTTTATGGGTGCTGATGTTACTCATCCCCACCCACTTGATGACTTCAGTCCTTCTGTTGCTGCTGTGGTTGGTAGCATGAATTGGCCAGCAGCAAACAAGTATGTGTCAAGAATGAGGTCGCAAACACACAGGCAAGAAATCATTGAGGATCTTGGTGCAATGGTGGAAGAATTGTTGGCTGAGTTTCAGCAAGAAGTAGGCAAACTCCCAAAGAGAATAGTTTTCTTCAGAGATGGGTGGTTCAGAAGAGGCACCACACTAGATTGTTCCCTTTTAAAAATGATCCATCTTCCAAACAGAACCAGTTCCTTGATGAAAACATTCCTCCGGGGACTGTGGTGGACACGGTGA

Protein Analysis

666

Amino Acids

75.75

Weight (kDa)

9.13

Isoelectric Point (pI)

40.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ArgoN PF16486 165 - 312 1.1e-28 N-terminal domain of argonaute
ArgoL1 PF08699 322 - 371 7.8e-17 Argonaute linker 1 domain
PAZ PF02170 384 - 506 5.2e-28 PAZ domain
ArgoL2 PF16488 516 - 562 8.6e-07 Argonaute linker 2 domain
Piwi PF02171 670 - 976 5.7e-91 Piwi domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014403)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69440
fragaria_vesca FvH4_4g30730
malus_domestica MD13G1068200.v1.1 MD16G1067000.v1.1
prunus_persica Prupe.1G279900_v2.0.a1
pyrus_communis pycom13g06000 pycom16g05840
rosa_chinensis RchiOBHm_Chr4g0439121
rosa_laevigata RLG00000006296
rosa_roxburghii Rroxscaffold_5G00380110
rosa_rugosa Rorug04G0315900
rosa_samantha Rh4AG366700 Rh4BG378200 Rh4CG392300 Rh4DG372800
rosa_wichuraiana Rw0G007490 Rw0G011740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1898
AccB7I CCANNNNNTGG 1 cut(s) 998
AccI GTMKAC 1 cut(s) 361
AciI CCGC 3 cut(s) 70, 504, 1126
AclWI GGATC 6 cut(s) 201, 523, 720, 777, 1803, 1924
AcoI YGGCCR 2 cut(s) 67, 1730
AcsI RAATTY 6 cut(s) 95, 170, 742, 799, 1016, 1241
AcuI CTGAAG 4 cut(s) 1052, 1472, 1675, 1858
AfaI GTAC 2 cut(s) 1502, 1592
AfiI CCNNNNNNNGG 1 cut(s) 998
AflII CTTAAG 2 cut(s) 920, 1625
AgsI TTSAA 7 cut(s) 90, 116, 185, 393, 766, 1007, 1169
AluBI AGCT 9 cut(s) 35, 112, 425, 479, 892, 1087, 1255, 1385, 1405
AluI AGCT 9 cut(s) 35, 112, 425, 479, 892, 1087, 1255, 1385, 1405
Alw26I GTCTC 2 cut(s) 656, 1351
AlwI GGATC 6 cut(s) 201, 523, 720, 777, 1803, 1924
AoxI GGCC 4 cut(s) 67, 871, 989, 1730
ApeKI GCWGC 7 cut(s) 751, 930, 1385, 1494, 1621, 1706, 1736
ApoI RAATTY 6 cut(s) 95, 170, 742, 799, 1016, 1241
Asp700I GAANNNNTTC 2 cut(s) 1951, 1967
AspS9I GGNCC 4 cut(s) 565, 938, 980, 989
AsuC2I CCSGG 1 cut(s) 1976
AsuHPI GGTGA 2 cut(s) 188, 1103
AsuII TTCGAA 2 cut(s) 236, 1320
AvaII GGWCC 3 cut(s) 565, 938, 980
AxyI CCTNAGG 1 cut(s) 303
BaeI ACNNNNGTAYC 2 cut(s) 1458, 1491
BalI TGGCCA 1 cut(s) 1732
BanI GGYRCC 1 cut(s) 1898
BbsI GAAGAC 1 cut(s) 587
BbvI GCAGC 7 cut(s) 738, 917, 1372, 1481, 1608, 1693, 1748
BciVI GTATCC 1 cut(s) 909
BclI TGATCA 2 cut(s) 3, 901
BcnI CCSGG 1 cut(s) 1976
BcoDI GTCTC 2 cut(s) 656, 1351
BfaI CTAG 4 cut(s) 51, 476, 1035, 1907
BfmI CTRYAG 1 cut(s) 426
BfrI CTTAAG 2 cut(s) 920, 1625
BfuI GTATCC 1 cut(s) 909
BisI GCNGC 8 cut(s) 70, 752, 931, 1386, 1495, 1622, 1707, 1737
BlsI GCNGC 8 cut(s) 71, 753, 932, 1387, 1496, 1623, 1708, 1738
Bme1390I CCNGG 1 cut(s) 1976
Bme18I GGWCC 3 cut(s) 565, 938, 980
BmgT120I GGNCC 4 cut(s) 565, 938, 980, 989
BmiI GGNNCC 2 cut(s) 566, 1900
BmrFI CCNGG 1 cut(s) 1976
BmrI ACTGGG 1 cut(s) 1286
BmsI GCATC 3 cut(s) 231, 1397, 1565
BmuI ACTGGG 1 cut(s) 1286
BoxI GACNNNNGTC 1 cut(s) 1692
BpiI GAAGAC 1 cut(s) 587
BpmI CTGGAG 1 cut(s) 1385
Bpu14I TTCGAA 2 cut(s) 236, 1320
BpuEI CTTGAG 3 cut(s) 289, 572, 1535
BpuMI CCSGG 1 cut(s) 1976
BsaJI CCNNGG 4 cut(s) 883, 934, 1616, 1975
BsaXI ACNNNNNCTCC 4 cut(s) 411, 441, 1331, 1361
Bsc4I CCNNNNNNNGG 1 cut(s) 998
Bse1I ACTGG 6 cut(s) 21, 234, 992, 1281, 1640, 1950
Bse21I CCTNAGG 1 cut(s) 303
Bse3DI GCAATG 1 cut(s) 1812
BseDI CCNNGG 4 cut(s) 883, 934, 1616, 1975
BseGI GGATG 4 cut(s) 135, 283, 1580, 1669
BseLI CCNNNNNNNGG 1 cut(s) 998
BseMI GCAATG 1 cut(s) 1812
BseMII CTCAG 4 cut(s) 317, 587, 699, 1818
BseNI ACTGG 6 cut(s) 21, 234, 992, 1281, 1640, 1950
BseRI GAGGAG 2 cut(s) 432, 435
BseXI GCAGC 7 cut(s) 738, 917, 1372, 1481, 1608, 1693, 1748
BshFI GGCC 4 cut(s) 69, 873, 991, 1732
BshNI GGYRCC 1 cut(s) 1898
BsiSI CCGG 1 cut(s) 1975
BslFI GGGAC 2 cut(s) 578, 1992
BslI CCNNNNNNNGG 1 cut(s) 998
BsmAI GTCTC 2 cut(s) 656, 1351
BsmFI GGGAC 2 cut(s) 578, 1992
BsmI GAATGC 2 cut(s) 1002, 1233
BsnI GGCC 4 cut(s) 69, 873, 991, 1732
Bsp119I TTCGAA 2 cut(s) 236, 1320
Bsp1407I TGTACA 1 cut(s) 1590
BspACI CCGC 3 cut(s) 70, 504, 1126
BspANI GGCC 4 cut(s) 69, 873, 991, 1732
BspCNI CTCAG 4 cut(s) 316, 586, 700, 1819
BspHI TCATGA 1 cut(s) 972
BspLI GGNNCC 2 cut(s) 566, 1900
BspPI GGATC 6 cut(s) 201, 523, 720, 777, 1803, 1924
BspT104I TTCGAA 2 cut(s) 236, 1320
BspT107I GGYRCC 1 cut(s) 1898
BspTI CTTAAG 2 cut(s) 920, 1625
BsrDI GCAATG 1 cut(s) 1812
BsrGI TGTACA 1 cut(s) 1590
BsrI ACTGG 6 cut(s) 21, 234, 992, 1281, 1640, 1950
BssECI CCNNGG 4 cut(s) 883, 934, 1616, 1975
BssNAI GTATAC 1 cut(s) 362
BssT1I CCWWGG 2 cut(s) 883, 934
Bst1107I GTATAC 1 cut(s) 362
Bst4CI ACNGT 6 cut(s) 86, 667, 792, 1582, 1983, 1995
Bst6I CTCTTC 2 cut(s) 1054, 1888
BstAFI CTTAAG 2 cut(s) 920, 1625
BstAUI TGTACA 1 cut(s) 1590
BstBI TTCGAA 2 cut(s) 236, 1320
BstC8I GCNNGC 2 cut(s) 1383, 1734
BstDEI CTNAG 7 cut(s) 303, 322, 455, 573, 708, 1362, 1827
BstF5I GGATG 4 cut(s) 135, 283, 1580, 1669
BstMAI GTCTC 2 cut(s) 656, 1351
BstMWI GCNNNNNNNGC 4 cut(s) 56, 157, 811, 1544
BstNSI RCATGY 1 cut(s) 1106
BstPAI GACNNNNGTC 1 cut(s) 1692
BstSCI CCNGG 1 cut(s) 1974
BstSFI CTRYAG 1 cut(s) 426
BstV1I GCAGC 7 cut(s) 738, 917, 1372, 1481, 1608, 1693, 1748
BstV2I GAAGAC 1 cut(s) 587
BstX2I RGATCY 2 cut(s) 712, 1795
BstYI RGATCY 2 cut(s) 712, 1795
BstZ17I GTATAC 1 cut(s) 362
Bsu36I CCTNAGG 1 cut(s) 303
BsuI GTATCC 1 cut(s) 909
BsuRI GGCC 4 cut(s) 69, 873, 991, 1732
BtsCI GGATG 4 cut(s) 135, 283, 1580, 1669
BtsI GCAGTG 2 cut(s) 1145, 1228
BtsIMutI CAGTG 4 cut(s) 705, 1145, 1228, 1647
Cac8I GCNNGC 2 cut(s) 1383, 1734
CciI TCATGA 1 cut(s) 972
Cfr13I GGNCC 4 cut(s) 565, 938, 980, 989
CseI GACGC 2 cut(s) 536, 1054
Csp6I GTAC 2 cut(s) 1501, 1591
CviQI GTAC 2 cut(s) 1501, 1591
DdeI CTNAG 7 cut(s) 303, 322, 455, 573, 708, 1362, 1827
DraI TTTAAA 2 cut(s) 1021, 1923
EaeI YGGCCR 2 cut(s) 67, 1730
Eam1104I CTCTTC 2 cut(s) 1054, 1888
EarI CTCTTC 2 cut(s) 1054, 1888
Eco130I CCWWGG 2 cut(s) 883, 934
Eco47I GGWCC 3 cut(s) 565, 938, 980
Eco57I CTGAAG 4 cut(s) 1052, 1472, 1675, 1858
Eco81I CCTNAGG 1 cut(s) 303
EcoO109I RGGNCCY 2 cut(s) 565, 980
EcoRI GAATTC 1 cut(s) 95
EcoT14I CCWWGG 2 cut(s) 883, 934
ErhI CCWWGG 2 cut(s) 883, 934
FalI AAGNNNNNCTT 2 cut(s) 140, 172
FaqI GGGAC 2 cut(s) 578, 1992
FauI CCCGC 1 cut(s) 1133
FbaI TGATCA 2 cut(s) 3, 901
FblI GTMKAC 1 cut(s) 361
Fnu4HI GCNGC 8 cut(s) 70, 752, 931, 1386, 1495, 1622, 1707, 1737
FokI GGATG 4 cut(s) 122, 290, 1587, 1656
Fsp4HI GCNGC 8 cut(s) 70, 752, 931, 1386, 1495, 1622, 1707, 1737
FspBI CTAG 4 cut(s) 51, 476, 1035, 1907
GluI GCNGC 8 cut(s) 70, 752, 931, 1386, 1495, 1622, 1707, 1737
GsuI CTGGAG 1 cut(s) 1385
HaeIII GGCC 4 cut(s) 69, 873, 991, 1732
HapII CCGG 1 cut(s) 1975
HgaI GACGC 2 cut(s) 536, 1054
HindIII AAGCTT 3 cut(s) 110, 890, 1085
HinfI GANTC 5 cut(s) 76, 343, 1062, 1144, 1358
HpaII CCGG 1 cut(s) 1975
HphI GGTGA 2 cut(s) 188, 1103
Hpy166II GTNNAC 4 cut(s) 362, 830, 1271, 1989
Hpy188I TCNGA 6 cut(s) 450, 576, 898, 906, 1877, 1892
Hpy8I GTNNAC 4 cut(s) 362, 830, 1271, 1989
HpyAV CCTTC 8 cut(s) 184, 578, 616, 863, 1076, 1131, 1163, 1707
HpyCH4III ACNGT 6 cut(s) 86, 667, 792, 1582, 1983, 1995
HpyCH4V TGCA 9 cut(s) 541, 814, 911, 1179, 1233, 1388, 1445, 1578, 1805
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 157, 811, 1544
HpyF3I CTNAG 7 cut(s) 303, 322, 455, 573, 708, 1362, 1827
Ksp22I TGATCA 2 cut(s) 3, 901
LmnI GCTCC 1 cut(s) 422
Lsp1109I GCAGC 7 cut(s) 738, 917, 1372, 1481, 1608, 1693, 1748
LweI GCATC 3 cut(s) 231, 1397, 1565
MaeI CTAG 4 cut(s) 51, 476, 1035, 1907
MaeIII GTNAC 5 cut(s) 176, 263, 499, 1105, 1663
MfeI CAATTG 1 cut(s) 1302
MflI RGATCY 2 cut(s) 712, 1795
MlsI TGGCCA 1 cut(s) 1732
MluNI TGGCCA 1 cut(s) 1732
MlyI GAGTC 2 cut(s) 352, 1071
MmeI TCCRAC 2 cut(s) 124, 1549
Mox20I TGGCCA 1 cut(s) 1732
MroXI GAANNNNTTC 2 cut(s) 1951, 1967
MscI TGGCCA 1 cut(s) 1732
MslI CAYNNNNRTG 1 cut(s) 524
Msp20I TGGCCA 1 cut(s) 1732
MspCI CTTAAG 2 cut(s) 920, 1625
MspI CCGG 1 cut(s) 1975
MspR9I CCNGG 1 cut(s) 1976
MunI CAATTG 1 cut(s) 1302
Mva1269I GAATGC 2 cut(s) 1002, 1233
MwoI GCNNNNNNNGC 4 cut(s) 56, 157, 811, 1544
NciI CCSGG 1 cut(s) 1976
NlaIV GGNNCC 2 cut(s) 566, 1900
NmeAIII GCCGAG 1 cut(s) 1597
NmuCI GTSAC 2 cut(s) 176, 499
NspI RCATGY 1 cut(s) 1106
NspV TTCGAA 2 cut(s) 236, 1320
PagI TCATGA 1 cut(s) 972
PctI GAATGC 2 cut(s) 1002, 1233
PdmI GAANNNNTTC 2 cut(s) 1951, 1967
PfeI GAWTC 3 cut(s) 76, 1144, 1358
PflMI CCANNNNNTGG 1 cut(s) 998
PkrI GCNGC 8 cut(s) 71, 753, 932, 1387, 1496, 1623, 1708, 1738
PleI GAGTC 2 cut(s) 351, 1070
PpsI GAGTC 2 cut(s) 351, 1070
PpuMI RGGWCCY 2 cut(s) 565, 980
PshAI GACNNNNGTC 1 cut(s) 1692
Psp5II RGGWCCY 2 cut(s) 565, 980
PspN4I GGNNCC 2 cut(s) 566, 1900
PspPI GGNCC 4 cut(s) 565, 938, 980, 989
PspPPI RGGWCCY 2 cut(s) 565, 980
PsrI GAACNNNNNNTAC 2 cut(s) 1507, 1539
PsuI RGATCY 2 cut(s) 712, 1795
RsaI GTAC 2 cut(s) 1502, 1592
RsaNI GTAC 2 cut(s) 1501, 1591
RseI CAYNNNNRTG 1 cut(s) 524
SatI GCNGC 8 cut(s) 70, 752, 931, 1386, 1495, 1622, 1707, 1737
Sau96I GGNCC 4 cut(s) 565, 938, 980, 989
SchI GAGTC 2 cut(s) 352, 1071
ScrFI CCNGG 1 cut(s) 1976
SfaNI GCATC 3 cut(s) 231, 1397, 1565
SfcI CTRYAG 1 cut(s) 426
SfuI TTCGAA 2 cut(s) 236, 1320
SinI GGWCC 3 cut(s) 565, 938, 980
SmiMI CAYNNNNRTG 1 cut(s) 524
SmlI CTYRAG 5 cut(s) 268, 551, 920, 1550, 1625
SmoI CTYRAG 5 cut(s) 268, 551, 920, 1550, 1625
SsiI CCGC 3 cut(s) 70, 504, 1126
SspMI CTAG 4 cut(s) 51, 476, 1035, 1907
StyD4I CCNGG 1 cut(s) 1974
StyI CCWWGG 2 cut(s) 883, 934
TaaI ACNGT 6 cut(s) 86, 667, 792, 1582, 1983, 1995
TaqI TCGA 4 cut(s) 93, 236, 386, 1320
TaqII GACCGA 1 cut(s) 955
TatI WGTACW 2 cut(s) 1500, 1590
TauI GCSGC 1 cut(s) 72
TfiI GAWTC 3 cut(s) 76, 1144, 1358
TscAI CASTG 4 cut(s) 712, 1145, 1235, 1647
TseFI GTSAC 2 cut(s) 176, 499
TseI GCWGC 7 cut(s) 751, 930, 1385, 1494, 1621, 1706, 1736
Tsp45I GTSAC 2 cut(s) 176, 499
TspDTI ATGAA 5 cut(s) 528, 981, 1234, 1739, 1976
TspGWI ACGGA 1 cut(s) 487
TspRI CASTG 4 cut(s) 712, 1145, 1235, 1647
Van91I CCANNNNNTGG 1 cut(s) 998
Vha464I CTTAAG 2 cut(s) 920, 1625
VpaK11BI GGWCC 3 cut(s) 565, 938, 980
XapI RAATTY 6 cut(s) 95, 170, 742, 799, 1016, 1241
XbaI TCTAGA 1 cut(s) 1034
XceI RCATGY 1 cut(s) 1106
XcmI CCANNNNNNNNNTGG 2 cut(s) 518, 881
XmiI GTMKAC 1 cut(s) 361
XmnI GAANNNNTTC 2 cut(s) 1951, 1967
XspI CTAG 4 cut(s) 51, 476, 1035, 1907
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.