Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0014403

Physical Location & Seq

Genomic Coordinates Reverse (-)

53334137 .. 53338175

Gene Structure 4039 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG378200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2463 bp

ATGATCAAGCAAAAACTGGTGGAGGATAACTCAGCTTTGCTCTGTGGTGCTAGTCCGGCTTATGATGGCCGCAAGAATCTTTACAGCTCAATCGAATTCCAACATGATAAGCTTGAAATGTATGTAAGCCTCCCCATCCCTACAACCAAGCCAACCTTGCCATGTGGGGAATTTGGTGACTTTCAAGAGAAGGATCATCAAATACTTAAACTTTTTCGTGTAAGCATCAAACTGGTTTCGAAGTTTGATGGAAAGGAATTGAGTAGCTACTTGGGCAAGGATGGAGATGAGTGGAAACCTATCCCTCAGGATTATCTTCATGCCTTGGATGTCGTTTTGAGAGAGAATCCATTGGAGAAGTGTGTGCCTGTGGGAAGATCACTTTATTCCAGTTCAATGGGAGGAACTAAAGACATTGGAGGAGGAGCTGTAGGATATAGAGGGTTCTTTCAGAGCCTTAGACCAACCCAACAAGGACTAGCTCTCAATGTTGATTTCTCCGTGACCGCTTTCCATGAAAGCATTGGAATGATCCCATACTTGCAGAAGCGTCTCGAGTTTCTTCGAGACCTTGCTCAGAGGAAGACAAGGGGTTTAAGTAGTGAAGAAAGGAAAGAAGTGGAGAAGGCATTGAAGAACATCAGGGTCTTTGTTTGCCATAGAGAAACAGTTCAGAGATACCGAGTTTTTGGCTTAACCGAGGAAGCCACTGAGAATCTTTGGTTTCCAGACAGGGATGGGAAGAATTTGAGGCTGCTGACTTACTTCAAGGATCACTACAACTATGATATACAGTTCAGGAATTTGCCATGTTTGCAGATTAGTAGGAGTAAACCATGTTATCTTCCTATGGAGCTATGTATGATCTGTGAAGGCCAGAAGTTCCTTGGGAAGCTTTCAGATGATCAGACTGCAAGGATACTTAAGATGGGCTGCCAAGGACCGAAAGAACGAAAATCCATCATAGATGGAGTCATGAGAGGACCTGTTGGGCCAATAAGTGGCATTCAGGAAAGGGAATTCAAACTCCGTGTTTCTAGAGAAATGACGCGATTAAATGGAAGAATTCTTCAGCCTCCGAAGCTAAAGCTTGGCGATGGTGGCCATGTAACAGACCTCATTCCTTCCCGTCATGATCGGCAGTGGAATCTTCTGGACAGCCATGTGTTTGAAGGAACTTGCGTTGAGAGGTGGGCATTGATTAGTTTTGGTGGCACCCCAGAACAGAAGCACTGCATTCCCAAATTCATACACCAGCTATCTCAAAGATGTGAACAACTAGGCATCTTTCTTAACAAAACCACAATTGTTAGCCCCCAATTCGAACCATCCCAAGTGCTTAACAATGTATCTCTTTTAGAATCTAAGATTAAGAAAATCCAAAGAGCTGCATCAAACAATCTCCAGCTGCTTATCTGTGTAATGGAAAGAAAACACAAAGGGTATGCAGACCTGAAGCGAATTGCGGATACAGGCGTTGGTGTTCTAACACAATGCTGCTTGTACTCAAACCTTTGCAGATTGAGTTCACAGTTTTTGGCTAACTTGGCTCTCAAGATCAATGCCAAAGTTGGAGGATGCACAGTTTCTTTGTACAACTCTTTGCCATCTCAAATCCCCCGGCTGCTTCAGAGTGATGAGCCAGTCATCTTTATGGGTGCTGATGTTACTCATCCTCACCCACTCGATGATTTCAGCCCTTCTGTTGCTGCTGTGGTTGGTAGCATGAATTGGCCTGCAGCAAACAAGTATGTTTCAAGAATGAGGTCACAAACACATAGGCAAGAAATCATTGAGGATCTTGGTGCAATGGTGGAAGAATTGTTGGATGAGTTTCACCAAGAAGTAGGCAAACTCCCAAAGAGAATAGTTTTCTTCAGAGATGGGGTAAGCGAAACACAATTCTACAAAGTGCTTCATGAAGAATTGCAAGCCATTAAAAAAGGTTGTTCTAAATTCCCTGGTTACACACCTCCCATAACCTTTGCAGTGGTTCAGAAGAGGCATCACACAAGATTGTTCCCTTTCAAAATTGATCCGTCTTCCAAACAGAACCAGTTCCTGGACGAAAACATTCCCCCGGGAACTGTGGTGGACACGGTGATCACTCACCCGAGAGAGTTTGATTTCTATCTTTGTAGCCATTGGGGTGTTAAGGGAACAAGCCGGCCAACACATTACCACATTCTGTGGGATGAAAACGAGTTCACTTCAGATGAACTGCAGAAACTGGTGAACATTCTATGCTACACATACGTAAGGTGCACCAAGCCGGTTTCTCTGGTGCCCCCGGCTTATTATGCTCACCTAGCTGCGTATAGAGGAAGGCTTTACCTTGAGCGATCGGAATCCACAACAGCTTACACAAGAAGTGGCTCCATACTCTCCAGAGCTGCCCCTCCAAAGGCAATGGCTCTACCAAAACTTAGTGAGAATGTTAGGAAGCTTATGTTTTACTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009791 GO:0009888 GO:0009892 GO:0009987 GO:0010033 GO:0010050 GO:0010073 GO:0010074 GO:0010267 GO:0010467 GO:0010468 GO:0010492 GO:0010599 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019222 GO:0019827 GO:0030422 GO:0031047 GO:0031050 GO:0032501 GO:0032502 GO:0034641 GO:0035194 GO:0035195 GO:0035821 GO:0040029 GO:0040034 GO:0042221 GO:0043170 GO:0043207 GO:0043331 GO:0044003 GO:0044237 GO:0044238 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045087 GO:0046483 GO:0048507 GO:0048519 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052018 GO:0052249 GO:0060145 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0098542 GO:0098586 GO:0098727 GO:1901360 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ArgoL1 ArgoL2 ArgoN PAZ Piwi

Protein Analysis

820

Amino Acids

93.31

Weight (kDa)

9.01

Isoelectric Point (pI)

43.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ArgoN	PF16486	2 - 113	1.9e-14	N-terminal domain of argonaute
ArgoL1	PF08699	123 - 172	6e-17	Argonaute linker 1 domain
PAZ	PF02170	185 - 307	3e-28	PAZ domain
ArgoL2	PF16488	317 - 363	1.3e-06	Argonaute linker 2 domain
Piwi	PF02171	471 - 777	5.1e-91	Piwi domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0014403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69440
fragaria_vesca	FvH4_4g30730
malus_domestica	MD13G1068200.v1.1 MD16G1067000.v1.1
prunus_persica	Prupe.1G279900_v2.0.a1
pyrus_communis	pycom13g06000 pycom16g05840
rosa_chinensis	RchiOBHm_Chr4g0439121
rosa_laevigata	RLG00000006296
rosa_roxburghii	Rroxscaffold_5G00380110
rosa_rugosa	Rorug04G0315900
rosa_samantha	Rh4AG366700 Rh4BG378200 Rh4CG392300 Rh4DG372800
rosa_wichuraiana	Rw0G007490 Rw0G011740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	1214, 2284
AccB7I	CCANNNNNTGG	2 cut(s)	1001, 2062
AccII	CGCG	1 cut(s)	1051
AciI	CCGC	3 cut(s)	70, 507, 1466
AclWI	GGATC	5 cut(s)	201, 526, 780, 1806, 2030
AcoI	YGGCCR	3 cut(s)	67, 1102, 2168
AcsI	RAATTY	8 cut(s)	95, 170, 745, 802, 1019, 1065, 1244, 1955
AcuI	CTGAAG	5 cut(s)	1055, 1475, 1613, 1861, 2196
AfaI	GTAC	2 cut(s)	1505, 1595
AfiI	CCNNNNNNNGG	3 cut(s)	1001, 2062, 2404
AflII	CTTAAG	1 cut(s)	923
AgsI	TTSAA	9 cut(s)	116, 185, 396, 634, 769, 1024, 1172, 1758, 2029
AjnI	CCWGG	2 cut(s)	1960, 2061
Alw21I	GWGCWC	1 cut(s)	2267
Alw26I	GTCTC	2 cut(s)	557, 561
Alw44I	GTGCAC	1 cut(s)	2263
AlwI	GGATC	5 cut(s)	201, 526, 780, 1806, 2030
AlwNI	CAGNNNCTG	2 cut(s)	2062, 2230
Ama87I	CYCGRG	3 cut(s)	554, 2080, 2113
AoxI	GGCC	6 cut(s)	67, 874, 992, 1102, 1733, 2168
ApaLI	GTGCAC	1 cut(s)	2263
ApoI	RAATTY	8 cut(s)	95, 170, 745, 802, 1019, 1065, 1244, 1955
Asp700I	GAANNNNTTC	3 cut(s)	669, 2057, 2073
AspS9I	GGNCC	3 cut(s)	941, 983, 992
AsuC2I	CCSGG	4 cut(s)	1621, 2081, 2082, 2291
AsuHPI	GGTGA	7 cut(s)	188, 1670, 1829, 2102, 2113, 2245, 2297
AsuII	TTCGAA	2 cut(s)	239, 1323
AvaI	CYCGRG	3 cut(s)	554, 2080, 2113
AvaII	GGWCC	2 cut(s)	941, 983
AxyI	CCTNAGG	1 cut(s)	306
BaeGI	GKGCMC	2 cut(s)	2267, 2289
BaeI	ACNNNNGTAYC	2 cut(s)	1461, 1494
BalI	TGGCCA	1 cut(s)	1104
BanI	GGYRCC	2 cut(s)	1214, 2284
BbsI	GAAGAC	2 cut(s)	590, 2034
Bbv12I	GWGCWC	1 cut(s)	2267
BciT130I	CCWGG	2 cut(s)	1962, 2063
BciVI	GTATCC	2 cut(s)	912, 1462
BclI	TGATCA	3 cut(s)	3, 904, 2103
BcnI	CCSGG	4 cut(s)	1621, 2081, 2082, 2291
BcoDI	GTCTC	2 cut(s)	557, 561
BfaI	CTAG	5 cut(s)	51, 479, 1038, 1280, 2309
BfmI	CTRYAG	3 cut(s)	429, 1737, 2222
BfrI	CTTAAG	1 cut(s)	923
BfuI	GTATCC	2 cut(s)	912, 1462
Bme1390I	CCNGG	6 cut(s)	1621, 1962, 2063, 2081, 2082, 2291
Bme18I	GGWCC	2 cut(s)	941, 983
BmeT110I	CYCGRG	3 cut(s)	554, 2080, 2113
BmgT120I	GGNCC	3 cut(s)	941, 983, 992
BmiI	GGNNCC	3 cut(s)	1216, 2286, 2377
BmrFI	CCNGG	6 cut(s)	1621, 1962, 2063, 2081, 2082, 2291
BmsI	GCATC	5 cut(s)	234, 1293, 1400, 1568, 2014
BpiI	GAAGAC	2 cut(s)	590, 2034
BplI	GAGNNNNNCTC	2 cut(s)	14, 46
BpmI	CTGGAG	2 cut(s)	1388, 2371
Bpu14I	TTCGAA	2 cut(s)	239, 1323
BpuEI	CTTGAG	2 cut(s)	1538, 2357
BpuMI	CCSGG	4 cut(s)	1621, 2081, 2082, 2291
BsaAI	YACGTR	1 cut(s)	2257
BsaBI	GATNNNNATC	2 cut(s)	2130, 2347
BsaI	GGTCTC	1 cut(s)	561
BsaJI	CCNNGG	9 cut(s)	324, 699, 886, 937, 1619, 1960, 2079, 2080, 2289
BsaXI	ACNNNNNCTCC	2 cut(s)	414, 444
Bsc4I	CCNNNNNNNGG	3 cut(s)	1001, 2062, 2404
Bse118I	RCCGGY	2 cut(s)	2166, 2272
Bse1I	ACTGG	6 cut(s)	21, 237, 390, 1643, 2056, 2235
Bse21I	CCTNAGG	1 cut(s)	306
Bse3DI	GCAATG	2 cut(s)	1815, 2415
Bse8I	GATNNNNATC	2 cut(s)	2130, 2347
BseBI	CCWGG	2 cut(s)	1962, 2063
BseDI	CCNNGG	9 cut(s)	324, 699, 886, 937, 1619, 1960, 2079, 2080, 2289
BseGI	GGATG	9 cut(s)	135, 286, 334, 742, 1328, 1583, 1672, 1834, 2200
BseJI	GATNNNNATC	2 cut(s)	2130, 2347
BseLI	CCNNNNNNNGG	3 cut(s)	1001, 2062, 2404
BseMI	GCAATG	2 cut(s)	1815, 2415
BseMII	CTCAG	4 cut(s)	45, 320, 590, 702
BseNI	ACTGG	6 cut(s)	21, 237, 390, 1643, 2056, 2235
BseRI	GAGGAG	2 cut(s)	435, 438
BseSI	GKGCMC	2 cut(s)	2267, 2289
Bsh1236I	CGCG	1 cut(s)	1051
Bsh1285I	CGRYCG	1 cut(s)	2345
BshFI	GGCC	6 cut(s)	69, 876, 994, 1104, 1735, 2170
BshNI	GGYRCC	2 cut(s)	1214, 2284
BsiEI	CGRYCG	1 cut(s)	2345
BsiHKAI	GWGCWC	1 cut(s)	2267
BsiHKCI	CYCGRG	3 cut(s)	554, 2080, 2113
BsiSI	CCGG	6 cut(s)	56, 1621, 2081, 2167, 2273, 2291
BslI	CCNNNNNNNGG	3 cut(s)	1001, 2062, 2404
BsmAI	GTCTC	2 cut(s)	557, 561
BsmBI	CGTCTC	1 cut(s)	557
BsmI	GAATGC	2 cut(s)	1005, 1236
BsnI	GGCC	6 cut(s)	69, 876, 994, 1104, 1735, 2170
Bso31I	GGTCTC	1 cut(s)	561
BsoBI	CYCGRG	3 cut(s)	554, 2080, 2113
Bsp119I	TTCGAA	2 cut(s)	239, 1323
Bsp1286I	GDGCHC	2 cut(s)	2267, 2289
Bsp1407I	TGTACA	1 cut(s)	1593
BspACI	CCGC	3 cut(s)	70, 507, 1466
BspANI	GGCC	6 cut(s)	69, 876, 994, 1104, 1735, 2170
BspCNI	CTCAG	4 cut(s)	44, 319, 589, 703
BspFNI	CGCG	1 cut(s)	1051
BspHI	TCATGA	3 cut(s)	975, 1132, 1918
BspLI	GGNNCC	3 cut(s)	1216, 2286, 2377
BspMAI	CTGCAG	2 cut(s)	1741, 2226
BspPI	GGATC	5 cut(s)	201, 526, 780, 1806, 2030
BspT104I	TTCGAA	2 cut(s)	239, 1323
BspT107I	GGYRCC	2 cut(s)	1214, 2284
BspTI	CTTAAG	1 cut(s)	923
BspTNI	GGTCTC	1 cut(s)	561
BsrDI	GCAATG	2 cut(s)	1815, 2415
BsrFI	RCCGGY	2 cut(s)	2166, 2272
BsrGI	TGTACA	1 cut(s)	1593
BsrI	ACTGG	6 cut(s)	21, 237, 390, 1643, 2056, 2235
BssAI	RCCGGY	2 cut(s)	2166, 2272
BssECI	CCNNGG	9 cut(s)	324, 699, 886, 937, 1619, 1960, 2079, 2080, 2289
BssT1I	CCWWGG	3 cut(s)	324, 886, 937
Bst2UI	CCWGG	2 cut(s)	1962, 2063
Bst4CI	ACNGT	6 cut(s)	670, 795, 1533, 1585, 2089, 2101
Bst6I	CTCTTC	1 cut(s)	1994
BstAFI	CTTAAG	1 cut(s)	923
BstAUI	TGTACA	1 cut(s)	1593
BstBAI	YACGTR	1 cut(s)	2257
BstBI	TTCGAA	2 cut(s)	239, 1323
BstC8I	GCNNGC	3 cut(s)	1737, 1932, 2168
BstDEI	CTNAG	7 cut(s)	31, 306, 458, 576, 711, 1365, 2426
BstF5I	GGATG	9 cut(s)	135, 286, 334, 742, 1328, 1583, 1672, 1834, 2200
BstFNI	CGCG	1 cut(s)	1051
BstMAI	GTCTC	2 cut(s)	557, 561
BstMCI	CGRYCG	1 cut(s)	2345
BstMWI	GCNNNNNNNGC	9 cut(s)	56, 157, 273, 814, 1081, 1101, 1547, 2300, 2309
BstNI	CCWGG	2 cut(s)	1962, 2063
BstSCI	CCNGG	6 cut(s)	1619, 1960, 2061, 2079, 2080, 2289
BstSFI	CTRYAG	3 cut(s)	429, 1737, 2222
BstSLI	GKGCMC	2 cut(s)	2267, 2289
BstSNI	TACGTA	1 cut(s)	2257
BstUI	CGCG	1 cut(s)	1051
BstV2I	GAAGAC	2 cut(s)	590, 2034
BstX2I	RGATCY	1 cut(s)	1798
BstXI	CCANNNNNNTGG	1 cut(s)	397
BstYI	RGATCY	1 cut(s)	1798
Bsu36I	CCTNAGG	1 cut(s)	306
BsuI	GTATCC	2 cut(s)	912, 1462
BsuRI	GGCC	6 cut(s)	69, 876, 994, 1104, 1735, 2170
BtgZI	GCGATG	1 cut(s)	1110
BtsCI	GGATG	9 cut(s)	135, 286, 334, 742, 1328, 1583, 1672, 1834, 2200
BtsI	GCAGTG	3 cut(s)	1148, 1231, 1995
BtsIMutI	CAGTG	4 cut(s)	708, 1148, 1231, 1995
Cac8I	GCNNGC	3 cut(s)	1737, 1932, 2168
CaiI	CAGNNNCTG	2 cut(s)	2062, 2230
CciI	TCATGA	3 cut(s)	975, 1132, 1918
Cfr10I	RCCGGY	2 cut(s)	2166, 2272
Cfr13I	GGNCC	3 cut(s)	941, 983, 992
Cfr9I	CCCGGG	1 cut(s)	2080
CseI	GACGC	2 cut(s)	539, 1057
Csp6I	GTAC	2 cut(s)	1504, 1594
CviQI	GTAC	2 cut(s)	1504, 1594
DdeI	CTNAG	7 cut(s)	31, 306, 458, 576, 711, 1365, 2426
EaeI	YGGCCR	3 cut(s)	67, 1102, 2168
Eam1104I	CTCTTC	1 cut(s)	1994
EarI	CTCTTC	1 cut(s)	1994
Eco105I	TACGTA	1 cut(s)	2257
Eco130I	CCWWGG	3 cut(s)	324, 886, 937
Eco31I	GGTCTC	1 cut(s)	561
Eco47I	GGWCC	2 cut(s)	941, 983
Eco57I	CTGAAG	5 cut(s)	1055, 1475, 1613, 1861, 2196
Eco81I	CCTNAGG	1 cut(s)	306
Eco88I	CYCGRG	3 cut(s)	554, 2080, 2113
EcoO109I	RGGNCCY	1 cut(s)	983
EcoRI	GAATTC	3 cut(s)	95, 1019, 1065
EcoRII	CCWGG	2 cut(s)	1960, 2061
EcoT14I	CCWWGG	3 cut(s)	324, 886, 937
ErhI	CCWWGG	3 cut(s)	324, 886, 937
Esp3I	CGTCTC	1 cut(s)	557
FalI	AAGNNNNNCTT	2 cut(s)	140, 172
FbaI	TGATCA	3 cut(s)	3, 904, 2103
FokI	GGATG	9 cut(s)	122, 293, 341, 749, 1315, 1590, 1659, 1841, 2207
FspBI	CTAG	5 cut(s)	51, 479, 1038, 1280, 2309
GsuI	CTGGAG	2 cut(s)	1388, 2371
HaeIII	GGCC	6 cut(s)	69, 876, 994, 1104, 1735, 2170
HapII	CCGG	6 cut(s)	56, 1621, 2081, 2167, 2273, 2291
HgaI	GACGC	2 cut(s)	539, 1057
HindIII	AAGCTT	4 cut(s)	110, 893, 1088, 2444
HinfI	GANTC	7 cut(s)	76, 346, 715, 972, 1147, 1361, 2348
HpaII	CCGG	6 cut(s)	56, 1621, 2081, 2167, 2273, 2291
HphI	GGTGA	7 cut(s)	188, 1670, 1829, 2102, 2113, 2245, 2297
Hpy166II	GTNNAC	7 cut(s)	833, 1274, 1529, 2095, 2208, 2236, 2265
Hpy8I	GTNNAC	7 cut(s)	833, 1274, 1529, 2095, 2208, 2236, 2265
HpyAV	CCTTC	7 cut(s)	184, 619, 866, 1134, 1166, 1710, 2319
HpyCH4III	ACNGT	6 cut(s)	670, 795, 1533, 1585, 2089, 2101
HpyCH4IV	ACGT	1 cut(s)	2256
HpyF10VI	GCNNNNNNNGC	9 cut(s)	56, 157, 273, 814, 1081, 1101, 1547, 2300, 2309
HpyF3I	CTNAG	7 cut(s)	31, 306, 458, 576, 711, 1365, 2426
HpySE526I	ACGT	1 cut(s)	2256
KroI	GCCGGC	1 cut(s)	2166
KroNI	GCCGGC	1 cut(s)	2168
Ksp22I	TGATCA	3 cut(s)	3, 904, 2103
LmnI	GCTCC	3 cut(s)	425, 853, 2381
LweI	GCATC	5 cut(s)	234, 1293, 1400, 1568, 2014
MaeI	CTAG	5 cut(s)	51, 479, 1038, 1280, 2309
MaeII	ACGT	1 cut(s)	2256
MaeIII	GTNAC	6 cut(s)	176, 502, 1108, 1666, 1767, 1964
MfeI	CAATTG	1 cut(s)	1305
MflI	RGATCY	1 cut(s)	1798
MhlI	GDGCHC	2 cut(s)	2267, 2289
MlsI	TGGCCA	1 cut(s)	1104
MluNI	TGGCCA	1 cut(s)	1104
MlyI	GAGTC	1 cut(s)	981
MmeI	TCCRAC	3 cut(s)	124, 1552, 1806
Mox20I	TGGCCA	1 cut(s)	1104
MroNI	GCCGGC	1 cut(s)	2166
MroXI	GAANNNNTTC	3 cut(s)	669, 2057, 2073
MscI	TGGCCA	1 cut(s)	1104
MslI	CAYNNNNRTG	3 cut(s)	527, 1652, 2148
Msp20I	TGGCCA	1 cut(s)	1104
MspA1I	CMGCKG	1 cut(s)	1408
MspCI	CTTAAG	1 cut(s)	923
MspI	CCGG	6 cut(s)	56, 1621, 2081, 2167, 2273, 2291
MspR9I	CCNGG	6 cut(s)	1621, 1962, 2063, 2081, 2082, 2291
MunI	CAATTG	1 cut(s)	1305
Mva1269I	GAATGC	2 cut(s)	1005, 1236
MvaI	CCWGG	2 cut(s)	1962, 2063
MvnI	CGCG	1 cut(s)	1051
MwoI	GCNNNNNNNGC	9 cut(s)	56, 157, 273, 814, 1081, 1101, 1547, 2300, 2309
NaeI	GCCGGC	1 cut(s)	2168
NciI	CCSGG	4 cut(s)	1621, 2081, 2082, 2291
NgoMIV	GCCGGC	1 cut(s)	2166
NlaIV	GGNNCC	3 cut(s)	1216, 2286, 2377
NmuCI	GTSAC	3 cut(s)	176, 502, 1767
NspV	TTCGAA	2 cut(s)	239, 1323
PaeR7I	CTCGAG	1 cut(s)	554
PagI	TCATGA	3 cut(s)	975, 1132, 1918
PctI	GAATGC	2 cut(s)	1005, 1236
PdiI	GCCGGC	1 cut(s)	2168
PdmI	GAANNNNTTC	3 cut(s)	669, 2057, 2073
PfeI	GAWTC	6 cut(s)	76, 346, 715, 1147, 1361, 2348
PflMI	CCANNNNNTGG	2 cut(s)	1001, 2062
PfoI	TCCNGGA	1 cut(s)	2061
Ple19I	CGATCG	1 cut(s)	2345
PleI	GAGTC	1 cut(s)	980
PpsI	GAGTC	1 cut(s)	980
Ppu21I	YACGTR	1 cut(s)	2257
PpuMI	RGGWCCY	1 cut(s)	983
Psp5II	RGGWCCY	1 cut(s)	983
Psp6I	CCWGG	2 cut(s)	1960, 2061
PspGI	CCWGG	2 cut(s)	1960, 2061
PspN4I	GGNNCC	3 cut(s)	1216, 2286, 2377
PspPI	GGNCC	3 cut(s)	941, 983, 992
PspPPI	RGGWCCY	1 cut(s)	983
PstI	CTGCAG	2 cut(s)	1741, 2226
PstNI	CAGNNNCTG	2 cut(s)	2062, 2230
PsuI	RGATCY	1 cut(s)	1798
PvuI	CGATCG	1 cut(s)	2345
PvuII	CAGCTG	1 cut(s)	1408
RsaI	GTAC	2 cut(s)	1505, 1595
RsaNI	GTAC	2 cut(s)	1504, 1594
RseI	CAYNNNNRTG	3 cut(s)	527, 1652, 2148
Sau96I	GGNCC	3 cut(s)	941, 983, 992
SchI	GAGTC	1 cut(s)	981
ScrFI	CCNGG	6 cut(s)	1621, 1962, 2063, 2081, 2082, 2291
SduI	GDGCHC	2 cut(s)	2267, 2289
SfaNI	GCATC	5 cut(s)	234, 1293, 1400, 1568, 2014
SfcI	CTRYAG	3 cut(s)	429, 1737, 2222
Sfr274I	CTCGAG	1 cut(s)	554
SfuI	TTCGAA	2 cut(s)	239, 1323
SinI	GGWCC	2 cut(s)	941, 983
SlaI	CTCGAG	1 cut(s)	554
SmaI	CCCGGG	1 cut(s)	2082
SmiMI	CAYNNNNRTG	3 cut(s)	527, 1652, 2148
SmlI	CTYRAG	4 cut(s)	554, 923, 1553, 2336
SmoI	CTYRAG	4 cut(s)	554, 923, 1553, 2336
SnaBI	TACGTA	1 cut(s)	2257
SsiI	CCGC	3 cut(s)	70, 507, 1466
SspMI	CTAG	5 cut(s)	51, 479, 1038, 1280, 2309
StyD4I	CCNGG	6 cut(s)	1619, 1960, 2061, 2079, 2080, 2289
StyI	CCWWGG	3 cut(s)	324, 886, 937
TaaI	ACNGT	6 cut(s)	670, 795, 1533, 1585, 2089, 2101
TaiI	ACGT	1 cut(s)	2259
TaqI	TCGA	6 cut(s)	93, 239, 555, 565, 1323, 1686
TaqII	GACCGA	1 cut(s)	958
TatI	WGTACW	2 cut(s)	1503, 1593
TauI	GCSGC	1 cut(s)	72
TfiI	GAWTC	6 cut(s)	76, 346, 715, 1147, 1361, 2348
TscAI	CASTG	4 cut(s)	715, 1148, 1238, 1995
TseFI	GTSAC	3 cut(s)	176, 502, 1767
Tsp45I	GTSAC	3 cut(s)	176, 502, 1767
TspDTI	ATGAA	8 cut(s)	308, 531, 1237, 1742, 1907, 1935, 2211, 2232
TspGWI	ACGGA	3 cut(s)	490, 1019, 2028
TspMI	CCCGGG	1 cut(s)	2080
TspRI	CASTG	4 cut(s)	715, 1148, 1238, 1995
Van91I	CCANNNNNTGG	2 cut(s)	1001, 2062
Vha464I	CTTAAG	1 cut(s)	923
VneI	GTGCAC	1 cut(s)	2263
VpaK11BI	GGWCC	2 cut(s)	941, 983
XapI	RAATTY	8 cut(s)	95, 170, 745, 802, 1019, 1065, 1244, 1955
XbaI	TCTAGA	1 cut(s)	1037
XcmI	CCANNNNNNNNNTGG	2 cut(s)	521, 884
XhoI	CTCGAG	1 cut(s)	554
XmaI	CCCGGG	1 cut(s)	2080
XmnI	GAANNNNTTC	3 cut(s)	669, 2057, 2073
XspI	CTAG	5 cut(s)	51, 479, 1038, 1280, 2309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.