Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0014403

Physical Location & Seq

Genomic Coordinates Forward (+)

6077500 .. 6081081

Gene Structure 3582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006296

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3057 bp

ATGGAAGAGACAGAAGAGTCCAATGGTAACAAGAAATGCAACACCAAAATCATAAGGGGCAGAACCAACAACCCACCTCAGAAGCACCATCACCATCACCATCACCAGCTAATACAATACTCAAATCAGTTTGGGTTCTTCAACCAGAACCAGTACTATCAGAGATACTACTATCCAGCTCTTCTTCCCCTCCCTCCTCTTATACCTCTGCCTCTGGCTTTAACTCCACCCTTGCCTCAGAACCACAGCTTCAGAACAAAAACCCATTTGCAGAAACCTTCATGCAAGCACAACAACTCTCCTTTTGCTGCTTCCTCAGAAACCCAAGTGCCCAAAGTCTCGATTTCACCAGAAGCTTCAAAAGGGTTTCAAAAGCAAACCAATTTGCCCCTTAAAGGAGAAAATGGAAGGAAATTCACAAGTGCAAGAACAGGGAAAGCAATAGTGACAGCAAAGAGGCCAGACTCTGGTGGGGTGGAAGGGACTGCTATTTCTCTCTTAGCTAACCATTTCCTTGTCCAATTCAATTCATCGGAGCGAATTTTTCACTACAATGTTGAAATCTCTCCTAGTCCCTCCAAGGACATTTCTCGAATGATCAAGCAAAAACTGGTGGAGGATAACTCAGCTTTGCTCTGTGGTGCTAGTCCGGCTTATGATGGCCGCAAGAATCTTTACAGCTCAATCGAATTCCAACATGATAAGCTTGAAATGTATGTAAGCCTCCCCATCCCCACAACCAAGCCAACCTTGCCATGTGGGGAATTTGGTGACTTTCAAGAGAAGGATCATCAAATACTTAAACTTTTTCGTGTAAGCATCAAACTGGTTTCGAAGTTTGATGGAAAGGAATTGAGTAGCTACTTGAGCAAGGATGGAGATGAGTGGAAACCTATCCCTCAGGATTATCTTCATGCCTTGGATGTGGTTTTGAGAGAGAGTCCATTGGAGAAGTGTGTGCCTGTGGGAAGATCACTTTATTCCAGTTCAATGGGAGGAACTAAAGACATTGGAGGAGGAGCTGTAGGATATAGAGGGTTCTTTCAGAGCCTTAGACCAACCCAACAAGGACTAGCTCTCAATGTTGATTTCTCCGTGACTGCTTTCCATGAAAGCATTGGAATGATCCCATACTTGCAGAAGCGTCTCGAGTTTCTTCGAGACCTTCCTCAGAGGAAGACAAGGGGTTTAAGTAGTGAAGAAAGGAAAGAAGTGGAGAAGGCATTGAAGAACATCAGGGTCTTTGTTTGCCATAGAGAAACAGTTCAGAGATACCGAGTTTTTGGCTTAACCGAGGAAGCCACTGAGAATCTTTGGTTTCCAGACAGGGATGGGAAGAATTTGAGGCTGCTGACTTACTTCAAGGATCACTACAACTATGATATACAGTTCAGGAATTTGCCATGTTTGCAGATTAGTAGGAGTAAACCATGTTATCTTCCTCTGGAGCTATGTATGATCTGTGAAGGCCAGAAGTTCCTTGGGAAGCTTTCAGATGATCAGACTGCAAGGATACTTAAGATGGGCTGCCAAGGACCGAAAGAACGAAAATCCATCATAGATGGAGTCATGAGAGGACCTGTTGGGCCAATAAGTGGCATTCAGGAAAGGGAATTCAAACTCCGTGTTTCTAGAGAAATGACGCGATTAAATGGAAGAATTCTTCAGCCTCCAAAGCTAAAGCTTGGTGATGGTGGCCATGTAACAGACCTCATTCCTTCCCGTCATGATCGGCAGTGGAATCTTCTGGACAGCCATGTGTTTGAAGGAACTTGCATTGAGAGGTGGGCATTGATTAGTTTTGGTGGCACTCCAGAACAGAAGCACTGCATTCCCAAATTCATACACCAGCTATCTCAAAGATGTGAACAACTAGGCATCTTTCTTAACAAAAACACAATTGTTAGCCCCCAATTCGAACCATCCCAAGTGCTTAACAATGTCTCTCTTTTAGAATCTAAGATTAAGAAAATCCAAAGAGCTGCATCAAACAATCTCCAGCTGCTTATCTGTGTAATGGAAAGAAAACACAAAGGGTATGCAGACCTGAAGCGAATTGCGGATACAGGCGTTGGTGTTCTAACACAATGCTGCTTGTACTCAAACCTTTGCAGATTGAGTTCACAGTTTTTGGCTAACTTGGCTCTCAAGATCAATGCCAAAGTTGGAGGATGCACAGTTTCTTTGTACAACTCTTTGCCATCTCAAATCCCCCGGCTGCTTCAGAGTGATGAGCCAGTAATCTTTATGGGTGCTGATGTTACTCATCCTCACCCACTCGATGATTTCAGCCCTTCTGTTGCTGCTGTGGTTGGTAGCATGAATTGGCCTGCAGCAAACAAGTATGTTTCAAGAATGAGGTCACAAACACATAGGCAAGAAATCATTGAGGATCTTGGTGCAATGGTGGAAGAATTGTTGGATGAGTTTCACCAAGAAGTAGGCAAACTCCCAAAGAGAATAGTTTTCTTCAGAGATGGGGTAAGTGAAACACAATTCTACAAAGTGCTTCATGAGGAATTGCAAGCCATTAAAAAAGGTTGTTCTAAATTCCCTGGTTACACACCTCCCATAACCTTTGCAGTGGTTCAGAAGAGGCATCACACAAGATTGTTCCCTTTCAAAATTGATCCGTCTTCCAAACAGAACCAGTTCCTCAACGAAAACATTCCCCCGGGAACTGTGGTGGACACGGTGATCACTCACCCGAGAGAGTTTGATTTCTATCTTTGTAGCCATTGGGGTGTTAAGGGAACAAGCCGGCCAACACATTACCACATTCTGTGGGATGAAAACGAGTTCACTTCAGATGAACTGCAGAAACTGGTGAACATTCTGTGCTACACATACGTAAGGTGCACCAAGCCGGTTTCTCTTGTGCCCCCGGCTTATTATGCTCACCTAGCTGCGTATAGAGGAAGGCTTTACCTTGAGCGATCGGAATACACAACAGCTTACACAAGAAGTGGCTCCATACTCTCCAGAGCTGCCCCTCCAAAGGCAATGGCTCTACCAAAACTTAGTGAGAATGTTAGGAAGCTTATGTTTTACTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009791 GO:0009888 GO:0009892 GO:0009987 GO:0010033 GO:0010050 GO:0010073 GO:0010074 GO:0010267 GO:0010467 GO:0010468 GO:0010492 GO:0010599 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019222 GO:0019827 GO:0030422 GO:0031047 GO:0031050 GO:0032501 GO:0032502 GO:0034641 GO:0035194 GO:0035195 GO:0035821 GO:0040029 GO:0040034 GO:0042221 GO:0043170 GO:0043207 GO:0043331 GO:0044003 GO:0044237 GO:0044238 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045087 GO:0046483 GO:0048507 GO:0048519 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052018 GO:0052249 GO:0060145 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0098542 GO:0098586 GO:0098727 GO:1901360 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ArgoL1 ArgoL2 ArgoN PAZ Piwi

Protein Analysis

1019

Amino Acids

115.78

Weight (kDa)

9.25

Isoelectric Point (pI)

45.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ArgoN	PF16486	163 - 311	1.2e-27	N-terminal domain of argonaute
ArgoL1	PF08699	321 - 370	7.8e-17	Argonaute linker 1 domain
PAZ	PF02170	383 - 505	1.8e-27	PAZ domain
ArgoL2	PF16488	515 - 561	1.7e-06	Argonaute linker 2 domain
Piwi	PF02171	669 - 975	8.4e-91	Piwi domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0014403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69440
fragaria_vesca	FvH4_4g30730
malus_domestica	MD13G1068200.v1.1 MD16G1067000.v1.1
prunus_persica	Prupe.1G279900_v2.0.a1
pyrus_communis	pycom13g06000 pycom16g05840
rosa_chinensis	RchiOBHm_Chr4g0439121
rosa_laevigata	RLG00000006296
rosa_roxburghii	Rroxscaffold_5G00380110
rosa_rugosa	Rorug04G0315900
rosa_samantha	Rh4AG366700 Rh4BG378200 Rh4CG392300 Rh4DG372800
rosa_wichuraiana	Rw0G007490 Rw0G011740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	16
AccB7I	CCANNNNNTGG	2 cut(s)	467, 1595
AccII	CGCG	1 cut(s)	1645
AciI	CCGC	2 cut(s)	664, 2060
AclWI	GGATC	5 cut(s)	795, 1120, 1374, 2400, 2624
AcoI	YGGCCR	3 cut(s)	661, 1696, 2762
AcuI	CTGAAG	6 cut(s)	235, 1649, 2069, 2207, 2455, 2790
AfaI	GTAC	3 cut(s)	155, 2099, 2189
AfiI	CCNNNNNNNGG	4 cut(s)	395, 467, 1595, 2998
AflII	CTTAAG	1 cut(s)	1517
AjnI	CCWGG	1 cut(s)	2554
Alw21I	GWGCWC	1 cut(s)	2861
Alw26I	GTCTC	5 cut(s)	2, 343, 1151, 1155, 1948
Alw44I	GTGCAC	1 cut(s)	2857
AlwI	GGATC	5 cut(s)	795, 1120, 1374, 2400, 2624
AlwNI	CAGNNNCTG	2 cut(s)	467, 2824
Ama87I	CYCGRG	3 cut(s)	1148, 2674, 2707
AoxI	GGCC	7 cut(s)	458, 661, 1468, 1586, 1696, 2327, 2762
ApaLI	GTGCAC	1 cut(s)	2857
Asp700I	GAANNNNTTC	3 cut(s)	1263, 2651, 2667
AspS9I	GGNCC	3 cut(s)	1535, 1577, 1586
AsuC2I	CCSGG	4 cut(s)	2215, 2675, 2676, 2885
AsuII	TTCGAA	2 cut(s)	833, 1917
AvaI	CYCGRG	3 cut(s)	1148, 2674, 2707
AvaII	GGWCC	2 cut(s)	1535, 1577
AxyI	CCTNAGG	1 cut(s)	900
BaeGI	GKGCMC	3 cut(s)	333, 2861, 2883
BaeI	ACNNNNGTAYC	2 cut(s)	2055, 2088
BalI	TGGCCA	1 cut(s)	1698
BbsI	GAAGAC	2 cut(s)	1184, 2628
Bbv12I	GWGCWC	1 cut(s)	2861
BciT130I	CCWGG	1 cut(s)	2556
BciVI	GTATCC	2 cut(s)	1506, 2056
BclI	TGATCA	3 cut(s)	597, 1498, 2697
BcnI	CCSGG	4 cut(s)	2215, 2675, 2676, 2885
BcoDI	GTCTC	5 cut(s)	2, 343, 1151, 1155, 1948
BfaI	CTAG	6 cut(s)	570, 645, 1073, 1632, 1874, 2903
BfmI	CTRYAG	3 cut(s)	1023, 2331, 2816
BfrI	CTTAAG	1 cut(s)	1517
BfuI	GTATCC	2 cut(s)	1506, 2056
BmcAI	AGTACT	1 cut(s)	155
Bme1390I	CCNGG	5 cut(s)	2215, 2556, 2675, 2676, 2885
Bme18I	GGWCC	2 cut(s)	1535, 1577
BmeT110I	CYCGRG	3 cut(s)	1148, 2674, 2707
BmgT120I	GGNCC	3 cut(s)	1535, 1577, 1586
BmiI	GGNNCC	1 cut(s)	2971
BmrFI	CCNGG	5 cut(s)	2215, 2556, 2675, 2676, 2885
BmsI	GCATC	5 cut(s)	828, 1887, 1994, 2162, 2608
BpiI	GAAGAC	2 cut(s)	1184, 2628
BplI	GAGNNNNNCTC	2 cut(s)	608, 640
BpmI	CTGGAG	4 cut(s)	1466, 1797, 1982, 2965
Bpu14I	TTCGAA	2 cut(s)	833, 1917
BpuEI	CTTGAG	3 cut(s)	886, 2132, 2951
BpuMI	CCSGG	4 cut(s)	2215, 2675, 2676, 2885
BsaAI	YACGTR	1 cut(s)	2851
BsaBI	GATNNNNATC	1 cut(s)	2724
BsaI	GGTCTC	1 cut(s)	1155
BsaXI	ACNNNNNCTCC	2 cut(s)	1008, 1038
Bsc4I	CCNNNNNNNGG	4 cut(s)	395, 467, 1595, 2998
Bse118I	RCCGGY	2 cut(s)	2760, 2866
Bse1I	ACTGG	7 cut(s)	151, 615, 831, 984, 2237, 2650, 2829
Bse21I	CCTNAGG	1 cut(s)	900
Bse3DI	GCAATG	2 cut(s)	2409, 3009
Bse8I	GATNNNNATC	1 cut(s)	2724
BseBI	CCWGG	1 cut(s)	2556
BseGI	GGATG	9 cut(s)	729, 880, 928, 1336, 1922, 2177, 2266, 2428, 2794
BseJI	GATNNNNATC	1 cut(s)	2724
BseLI	CCNNNNNNNGG	4 cut(s)	395, 467, 1595, 2998
BseMI	GCAATG	2 cut(s)	2409, 3009
BseMII	CTCAG	7 cut(s)	92, 251, 330, 639, 914, 1184, 1296
BseNI	ACTGG	7 cut(s)	151, 615, 831, 984, 2237, 2650, 2829
BseRI	GAGGAG	3 cut(s)	186, 1029, 1032
BseSI	GKGCMC	3 cut(s)	333, 2861, 2883
Bsh1236I	CGCG	1 cut(s)	1645
Bsh1285I	CGRYCG	1 cut(s)	2939
BshFI	GGCC	7 cut(s)	460, 663, 1470, 1588, 1698, 2329, 2764
BsiEI	CGRYCG	1 cut(s)	2939
BsiHKAI	GWGCWC	1 cut(s)	2861
BsiHKCI	CYCGRG	3 cut(s)	1148, 2674, 2707
BsiSI	CCGG	6 cut(s)	650, 2215, 2675, 2761, 2867, 2885
BslFI	GGGAC	2 cut(s)	496, 558
BslI	CCNNNNNNNGG	4 cut(s)	395, 467, 1595, 2998
BsmAI	GTCTC	5 cut(s)	2, 343, 1151, 1155, 1948
BsmBI	CGTCTC	1 cut(s)	1151
BsmFI	GGGAC	2 cut(s)	496, 558
BsmI	GAATGC	2 cut(s)	1599, 1830
BsnI	GGCC	7 cut(s)	460, 663, 1470, 1588, 1698, 2329, 2764
Bso31I	GGTCTC	1 cut(s)	1155
BsoBI	CYCGRG	3 cut(s)	1148, 2674, 2707
Bsp119I	TTCGAA	2 cut(s)	833, 1917
Bsp1286I	GDGCHC	3 cut(s)	333, 2861, 2883
Bsp1407I	TGTACA	1 cut(s)	2187
BspACI	CCGC	2 cut(s)	664, 2060
BspANI	GGCC	7 cut(s)	460, 663, 1470, 1588, 1698, 2329, 2764
BspCNI	CTCAG	7 cut(s)	91, 250, 329, 638, 913, 1183, 1297
BspFNI	CGCG	1 cut(s)	1645
BspHI	TCATGA	3 cut(s)	1569, 1726, 2512
BspLI	GGNNCC	1 cut(s)	2971
BspMAI	CTGCAG	2 cut(s)	2335, 2820
BspPI	GGATC	5 cut(s)	795, 1120, 1374, 2400, 2624
BspQI	GCTCTTC	1 cut(s)	186
BspT104I	TTCGAA	2 cut(s)	833, 1917
BspTI	CTTAAG	1 cut(s)	1517
BspTNI	GGTCTC	1 cut(s)	1155
BsrDI	GCAATG	2 cut(s)	2409, 3009
BsrFI	RCCGGY	2 cut(s)	2760, 2866
BsrGI	TGTACA	1 cut(s)	2187
BsrI	ACTGG	7 cut(s)	151, 615, 831, 984, 2237, 2650, 2829
BssAI	RCCGGY	2 cut(s)	2760, 2866
BssT1I	CCWWGG	4 cut(s)	579, 918, 1480, 1531
Bst2UI	CCWGG	1 cut(s)	2556
Bst4CI	ACNGT	6 cut(s)	1264, 1389, 2127, 2179, 2683, 2695
Bst6I	CTCTTC	3 cut(s)	9, 186, 2588
BstAFI	CTTAAG	1 cut(s)	1517
BstAUI	TGTACA	1 cut(s)	2187
BstBAI	YACGTR	1 cut(s)	2851
BstBI	TTCGAA	2 cut(s)	833, 1917
BstC8I	GCNNGC	4 cut(s)	287, 2331, 2526, 2762
BstF5I	GGATG	9 cut(s)	729, 880, 928, 1336, 1922, 2177, 2266, 2428, 2794
BstFNI	CGCG	1 cut(s)	1645
BstMAI	GTCTC	5 cut(s)	2, 343, 1151, 1155, 1948
BstMCI	CGRYCG	1 cut(s)	2939
BstMWI	GCNNNNNNNGC	8 cut(s)	650, 751, 867, 1408, 1675, 2141, 2894, 2903
BstNI	CCWGG	1 cut(s)	2556
BstSCI	CCNGG	5 cut(s)	2213, 2554, 2673, 2674, 2883
BstSFI	CTRYAG	3 cut(s)	1023, 2331, 2816
BstSLI	GKGCMC	3 cut(s)	333, 2861, 2883
BstSNI	TACGTA	1 cut(s)	2851
BstUI	CGCG	1 cut(s)	1645
BstV2I	GAAGAC	2 cut(s)	1184, 2628
BstX2I	RGATCY	1 cut(s)	2392
BstXI	CCANNNNNNTGG	1 cut(s)	991
BstYI	RGATCY	1 cut(s)	2392
Bsu36I	CCTNAGG	1 cut(s)	900
BsuI	GTATCC	2 cut(s)	1506, 2056
BsuRI	GGCC	7 cut(s)	460, 663, 1470, 1588, 1698, 2329, 2764
BtsCI	GGATG	9 cut(s)	729, 880, 928, 1336, 1922, 2177, 2266, 2428, 2794
BtsI	GCAGTG	3 cut(s)	1742, 1825, 2589
BtsIMutI	CAGTG	4 cut(s)	1302, 1742, 1825, 2589
Cac8I	GCNNGC	4 cut(s)	287, 2331, 2526, 2762
CaiI	CAGNNNCTG	2 cut(s)	467, 2824
CciI	TCATGA	3 cut(s)	1569, 1726, 2512
Cfr10I	RCCGGY	2 cut(s)	2760, 2866
Cfr13I	GGNCC	3 cut(s)	1535, 1577, 1586
Cfr9I	CCCGGG	1 cut(s)	2674
CseI	GACGC	2 cut(s)	1133, 1651
Csp6I	GTAC	3 cut(s)	154, 2098, 2188
CviQI	GTAC	3 cut(s)	154, 2098, 2188
DrdI	GACNNNNNNGTC	1 cut(s)	16
DseDI	GACNNNNNNGTC	1 cut(s)	16
EaeI	YGGCCR	3 cut(s)	661, 1696, 2762
Eam1104I	CTCTTC	3 cut(s)	9, 186, 2588
EarI	CTCTTC	3 cut(s)	9, 186, 2588
Eco105I	TACGTA	1 cut(s)	2851
Eco130I	CCWWGG	4 cut(s)	579, 918, 1480, 1531
Eco31I	GGTCTC	1 cut(s)	1155
Eco47I	GGWCC	2 cut(s)	1535, 1577
Eco57I	CTGAAG	6 cut(s)	235, 1649, 2069, 2207, 2455, 2790
Eco81I	CCTNAGG	1 cut(s)	900
Eco88I	CYCGRG	3 cut(s)	1148, 2674, 2707
EcoO109I	RGGNCCY	1 cut(s)	1577
EcoRI	GAATTC	3 cut(s)	689, 1613, 1659
EcoRII	CCWGG	1 cut(s)	2554
EcoT14I	CCWWGG	4 cut(s)	579, 918, 1480, 1531
ErhI	CCWWGG	4 cut(s)	579, 918, 1480, 1531
Esp3I	CGTCTC	1 cut(s)	1151
FalI	AAGNNNNNCTT	2 cut(s)	734, 766
FaqI	GGGAC	2 cut(s)	496, 558
FbaI	TGATCA	3 cut(s)	597, 1498, 2697
FokI	GGATG	9 cut(s)	716, 887, 935, 1343, 1909, 2184, 2253, 2435, 2801
FspBI	CTAG	6 cut(s)	570, 645, 1073, 1632, 1874, 2903
GsuI	CTGGAG	4 cut(s)	1466, 1797, 1982, 2965
HaeIII	GGCC	7 cut(s)	460, 663, 1470, 1588, 1698, 2329, 2764
HapII	CCGG	6 cut(s)	650, 2215, 2675, 2761, 2867, 2885
HgaI	GACGC	2 cut(s)	1133, 1651
HindIII	AAGCTT	5 cut(s)	354, 704, 1487, 1682, 3038
HinfI	GANTC	8 cut(s)	17, 464, 670, 940, 1309, 1566, 1741, 1955
HpaII	CCGG	6 cut(s)	650, 2215, 2675, 2761, 2867, 2885
Hpy166II	GTNNAC	7 cut(s)	1427, 1868, 2123, 2689, 2802, 2830, 2859
Hpy8I	GTNNAC	7 cut(s)	1427, 1868, 2123, 2689, 2802, 2830, 2859
HpyCH4III	ACNGT	6 cut(s)	1264, 1389, 2127, 2179, 2683, 2695
HpyCH4IV	ACGT	1 cut(s)	2850
HpyF10VI	GCNNNNNNNGC	8 cut(s)	650, 751, 867, 1408, 1675, 2141, 2894, 2903
HpySE526I	ACGT	1 cut(s)	2850
KroI	GCCGGC	1 cut(s)	2760
KroNI	GCCGGC	1 cut(s)	2762
Ksp22I	TGATCA	3 cut(s)	597, 1498, 2697
LguI	GCTCTTC	1 cut(s)	186
LmnI	GCTCC	4 cut(s)	535, 1019, 1447, 2975
LweI	GCATC	5 cut(s)	828, 1887, 1994, 2162, 2608
MaeI	CTAG	6 cut(s)	570, 645, 1073, 1632, 1874, 2903
MaeII	ACGT	1 cut(s)	2850
MaeIII	GTNAC	8 cut(s)	26, 445, 770, 1096, 1702, 2260, 2361, 2558
MfeI	CAATTG	1 cut(s)	1899
MflI	RGATCY	1 cut(s)	2392
MhlI	GDGCHC	3 cut(s)	333, 2861, 2883
MlsI	TGGCCA	1 cut(s)	1698
MluNI	TGGCCA	1 cut(s)	1698
MlyI	GAGTC	4 cut(s)	26, 458, 949, 1575
MmeI	TCCRAC	3 cut(s)	718, 2146, 2400
Mox20I	TGGCCA	1 cut(s)	1698
MroNI	GCCGGC	1 cut(s)	2760
MroXI	GAANNNNTTC	3 cut(s)	1263, 2651, 2667
MscI	TGGCCA	1 cut(s)	1698
MslI	CAYNNNNRTG	3 cut(s)	552, 1121, 2742
Msp20I	TGGCCA	1 cut(s)	1698
MspA1I	CMGCKG	1 cut(s)	2002
MspCI	CTTAAG	1 cut(s)	1517
MspI	CCGG	6 cut(s)	650, 2215, 2675, 2761, 2867, 2885
MspR9I	CCNGG	5 cut(s)	2215, 2556, 2675, 2676, 2885
MunI	CAATTG	1 cut(s)	1899
Mva1269I	GAATGC	2 cut(s)	1599, 1830
MvaI	CCWGG	1 cut(s)	2556
MvnI	CGCG	1 cut(s)	1645
MwoI	GCNNNNNNNGC	8 cut(s)	650, 751, 867, 1408, 1675, 2141, 2894, 2903
NaeI	GCCGGC	1 cut(s)	2762
NciI	CCSGG	4 cut(s)	2215, 2675, 2676, 2885
NgoMIV	GCCGGC	1 cut(s)	2760
NlaIV	GGNNCC	1 cut(s)	2971
NmuCI	GTSAC	4 cut(s)	445, 770, 1096, 2361
NspV	TTCGAA	2 cut(s)	833, 1917
PaeR7I	CTCGAG	1 cut(s)	1148
PagI	TCATGA	3 cut(s)	1569, 1726, 2512
PciSI	GCTCTTC	1 cut(s)	186
PctI	GAATGC	2 cut(s)	1599, 1830
PdiI	GCCGGC	1 cut(s)	2762
PdmI	GAANNNNTTC	3 cut(s)	1263, 2651, 2667
PfeI	GAWTC	4 cut(s)	670, 1309, 1741, 1955
PflMI	CCANNNNNTGG	2 cut(s)	467, 1595
Ple19I	CGATCG	1 cut(s)	2939
PleI	GAGTC	4 cut(s)	25, 458, 948, 1574
PpsI	GAGTC	4 cut(s)	25, 458, 948, 1574
Ppu21I	YACGTR	1 cut(s)	2851
PpuMI	RGGWCCY	1 cut(s)	1577
Psp5II	RGGWCCY	1 cut(s)	1577
Psp6I	CCWGG	1 cut(s)	2554
PspGI	CCWGG	1 cut(s)	2554
PspN4I	GGNNCC	1 cut(s)	2971
PspPI	GGNCC	3 cut(s)	1535, 1577, 1586
PspPPI	RGGWCCY	1 cut(s)	1577
PstI	CTGCAG	2 cut(s)	2335, 2820
PstNI	CAGNNNCTG	2 cut(s)	467, 2824
PsuI	RGATCY	1 cut(s)	2392
PvuI	CGATCG	1 cut(s)	2939
PvuII	CAGCTG	1 cut(s)	2002
RsaI	GTAC	3 cut(s)	155, 2099, 2189
RsaNI	GTAC	3 cut(s)	154, 2098, 2188
RseI	CAYNNNNRTG	3 cut(s)	552, 1121, 2742
SapI	GCTCTTC	1 cut(s)	186
Sau96I	GGNCC	3 cut(s)	1535, 1577, 1586
ScaI	AGTACT	1 cut(s)	155
SchI	GAGTC	4 cut(s)	26, 458, 949, 1575
ScrFI	CCNGG	5 cut(s)	2215, 2556, 2675, 2676, 2885
SduI	GDGCHC	3 cut(s)	333, 2861, 2883
SfaNI	GCATC	5 cut(s)	828, 1887, 1994, 2162, 2608
SfcI	CTRYAG	3 cut(s)	1023, 2331, 2816
Sfr274I	CTCGAG	1 cut(s)	1148
SfuI	TTCGAA	2 cut(s)	833, 1917
SinI	GGWCC	2 cut(s)	1535, 1577
SlaI	CTCGAG	1 cut(s)	1148
SmaI	CCCGGG	1 cut(s)	2676
SmiMI	CAYNNNNRTG	3 cut(s)	552, 1121, 2742
SmlI	CTYRAG	5 cut(s)	865, 1148, 1517, 2147, 2930
SmoI	CTYRAG	5 cut(s)	865, 1148, 1517, 2147, 2930
SnaBI	TACGTA	1 cut(s)	2851
SsiI	CCGC	2 cut(s)	664, 2060
SspMI	CTAG	6 cut(s)	570, 645, 1073, 1632, 1874, 2903
StyD4I	CCNGG	5 cut(s)	2213, 2554, 2673, 2674, 2883
StyI	CCWWGG	4 cut(s)	579, 918, 1480, 1531
TaaI	ACNGT	6 cut(s)	1264, 1389, 2127, 2179, 2683, 2695
TaiI	ACGT	1 cut(s)	2853
TaqI	TCGA	8 cut(s)	341, 592, 687, 833, 1149, 1159, 1917, 2280
TaqII	GACCGA	1 cut(s)	1552
TatI	WGTACW	3 cut(s)	153, 2097, 2187
TauI	GCSGC	1 cut(s)	666
TfiI	GAWTC	4 cut(s)	670, 1309, 1741, 1955
TscAI	CASTG	4 cut(s)	1309, 1742, 1832, 2589
TseFI	GTSAC	4 cut(s)	445, 770, 1096, 2361
Tsp45I	GTSAC	4 cut(s)	445, 770, 1096, 2361
TspDTI	ATGAA	9 cut(s)	270, 519, 902, 1125, 1831, 2336, 2501, 2805, 2826
TspGWI	ACGGA	3 cut(s)	1084, 1613, 2622
TspMI	CCCGGG	1 cut(s)	2674
TspRI	CASTG	4 cut(s)	1309, 1742, 1832, 2589
Van91I	CCANNNNNTGG	2 cut(s)	467, 1595
Vha464I	CTTAAG	1 cut(s)	1517
VneI	GTGCAC	1 cut(s)	2857
VpaK11BI	GGWCC	2 cut(s)	1535, 1577
XbaI	TCTAGA	1 cut(s)	1631
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1115, 1478
XhoI	CTCGAG	1 cut(s)	1148
XmaI	CCCGGG	1 cut(s)	2674
XmnI	GAANNNNTTC	3 cut(s)	1263, 2651, 2667
XspI	CTAG	6 cut(s)	570, 645, 1073, 1632, 1874, 2903
ZrmI	AGTACT	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.