Rroxscaffold_5G00380110

Belongs to the argonaute family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
60285321 .. 60289220
3900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00380110.1

Sequence Viewer

Length: 3057 bp
ATGGAAGAGACAGAAGAGTCCAATGGTAACAAGAAATGCAACACCAAAATCATAAGGGCCAGAACCAACAACCCACCTCAGAAGCACCATCACCATCACCATCACCAGCTAATACAATACTCAAATCAGTTTGGGTTCTTCAACCAGAACCAGTACTATCAGAGATACTACTATCCAGCTCTTCTTCCCCTCCCTCCTCTTATACCTCTGCCTCTGGCTTTAACTCCACCCTTGCCTCAGAATCACAGCTTCAGAACAAAAACCCATTTGCAGAAACCTTCATGCAAGCACAACAACTCTCCTTTTGCTGCTTCCTCAGAAACCCAAGTGCCCAAAGTCTCGATTTCACCAGAAGATTCAAAAGGGTTTCAAAAGCAAACCAATTTGCCCCTTAAAGGAGAAAATGGAAGGAAATTCACAAGTGCAAGAACAGGGAAAGCAATAGTGACAGCAAAGAGGCCAGACTCTGGTGGGGTGGAAGGGACTGCTATTTCTCTCTTAGCTAACCATTTCCTTGTCCAATTCAATTCATCGGAGCGAATTTTTCACTACAATGTTGAAATCTCTCCTAGTCCCTCCAAGGACATTTCTCGAATGATCAAGCAAAAACTGGTGGAGGATAACTCAGCTTTGCTCTGTGGTGCTAGTCCGGCTTATGATGGCCGCAAGAATCTTTACAGCTCAATCGAATTCCAACATGATAAGCTTGAAATGCATGTAAGCCTCCCCATCCCTACAACCAAGCCTACCTTGCCATGTGGGGAATTTGGTGACTTTCAAGAGAAGGATCATCAAATACTTAAACTTTTTCGTGTAAGCATCAAACTGGTTTCAAAGTTTGATGGAAAGGAATTGAGTAGCTACTTGAGCAAGGATGGAGATGAGTGGAAACCTATCCCTCAGGATTATCTTCATGCCTTGGATGTGGTTTTGAGAGAGAGTCCATTGGAGAAGTGTGTGCCTGTGGGAAGATCACTTTATTCCAGTTCAATGGGAGGAACTAAAGACATTGGAGGAGGAGCTGTAGGATATAGAGGGTTCTTTCAGAGCCTTAGACCAACCCAACAAGGACTAGCTCTCAATGTTGATTTCTCCGTGACCGCTTTCCATGAAAGCATTGGAATGATCCCATACTTGCAGAAGCGTCTCGAGTTTCTTCGAGACCTTCCTCAGAGGAAGACAAGGGGTTTAAGTAGTGAAGAAAGGAAAGAAGCGGAGAAGGCATTGAAGAACATCAGGGTCTTTGTTTGCCATAGAGAAACAGTTCAGAGATACCGAGTTTTTGGCTTAACCGAGGAAGCCACTGAGAATCTTTGGTTTCCAGACAGGGATGGGAAGAATTTGAGGCTGCTGACTTACTTCAAGGATCACTACAACTATGATATACAGTTCAGGAATTTGCCATGTTTGCAGATTAGTAGGAGTAAACCATGTTATCTTCCTATGGAGCTATGTATGATCTGTGAAGGCCAGAAGTTCCTTGGGAAGCTTTCAGATGATCAGACTGCAAGGATACTTAAGATGGGCTGCCAAGGACCGAAAGAACGAAAATCCATCATAGATGGAGTCATGAGAGGACCTGTTGGGCCAATAAGTGGCATTCAGGAAAGGGAATTCAAACTCCGTGTTTCTAGAGAAATGACGCGATTAAATGGAAGAATTCTTCTGCCTCCAAAGCTAAAGCTTGGTGATGGTGGCCATGTAACAGACCTCATTCCTTCCCGTCATGATCGGCAGTGGAATCTTCTGGACAGCCATGTGTTTGAAGGAACTTGCATTGAGAGGTGGGCATTGATTAGTTTTGGTGGCACTCCAGAGCAGAAGCACTGCATTCCCAAATTCATACACCAGCTATCTCAAAGATGTGAACAACTAGGCATCTTTCTTAACAAAAACACAATTGTTAGCCCCCAATTCGAACCATCCCAAGTGCTTAACAATGTCTCTCTTTTAGAATCTAAGATTAAGAAAATCCAAAGAGCTGCATCAAACAATCTCCAGCTGCTTATATGTGTAATGGAAAGAAAACACAAAGGGTATGCAGACCTGAAGCGAATTGCGGATACAGGCGTTGGTGTTCTAACACAATGCTGCTTGTACTCAAACCTTTGCAGATTGAGTTCACAGTTTTTGGCTAACTTGGCTCTCAAGATCAATGCCAAAGTTGGAGGATGCACAGTTTCTTTGTACAACTCTTTGCCATCTCAAATCCCCCGGCTGCTTCAGAGTGATGAGCCAGTAATCTTTATGGGTGCTGATGTTACTCATCCTCACCCACTCGATGATTTCAGCCCTTCTGTTGCTGCTGTGGTTGGTAGCATGAATTGGCCTGCAGCAAACAAGTATGTTTCAAGAATGAGGTCACAAACACATAGGCAAGAAATCATTGAGGATCTTGGTGCAATGGTGGAAGAATTGTTGGATGAATTTCACCAAGAAGTAGGCAAACTCCCAAAGAGAATAGTTTTCTTCAGAGATGGGGTAAGTGAAACACAATTCTACAAAGTGCTTCATGAGGAATTGCAAGCCATTAAAAAAGGTTGTTCTAAATTCCCTGGTTACACACCTCCCATAACCTTTGCAGTGGTTCAGAAGAGGCATCACACAAGATTGTTCCCTTTCAAAATTGATCCGTCTTCCAAACAGAACCAGTTCCTCAATGAAAACATTCCCCCGGGAACTGTGGTGGACACGGTGATCACTCACCCGAGAGAGTTTGATTTCTATCTTTGTAGCCATTGGGGTGTTAAGGGAACAAGCCGGCCAACACATTACCACATTCTGTGGGATGAAAACGAGTTCACTTCAGATGAACTGCAGAAACTGGTGAACATTCTGTGCTACACATACGTAAGGTGCACCAAGCCGGTTTCTCTTGTGCCCCCGGCTTATTATGCTCACCTAGCTGCCTATAGAGGAAGGCTTTACCTTGAGCGATCGGAATCCACAACAGCTTACACAAGAAGTGGCTCCATACTCTCCAGAGCTGCCCCTCCAAAGGCAATGGCTCTACCAAAACTTAGTGAGAATGTTAGGAAGCTTATGTTTTACTGCTGA

Protein Analysis

1018

Amino Acids

115.71

Weight (kDa)

9.24

Isoelectric Point (pI)

46.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ArgoN PF16486 163 - 311 8.3e-28 N-terminal domain of argonaute
ArgoL1 PF08699 321 - 370 7.8e-17 Argonaute linker 1 domain
PAZ PF02170 383 - 505 4.1e-28 PAZ domain
Piwi PF02171 669 - 975 8.4e-91 Piwi domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014403)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69440
fragaria_vesca FvH4_4g30730
malus_domestica MD13G1068200.v1.1 MD16G1067000.v1.1
prunus_persica Prupe.1G279900_v2.0.a1
pyrus_communis pycom13g06000 pycom16g05840
rosa_chinensis RchiOBHm_Chr4g0439121
rosa_laevigata RLG00000006296
rosa_roxburghii Rroxscaffold_5G00380110
rosa_rugosa Rorug04G0315900
rosa_samantha Rh4AG366700 Rh4BG378200 Rh4CG392300 Rh4DG372800
rosa_wichuraiana Rw0G007490 Rw0G011740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 16
AccB7I CCANNNNNTGG 2 cut(s) 467, 1595
AccII CGCG 1 cut(s) 1645
AciI CCGC 4 cut(s) 664, 1101, 1214, 2060
AclWI GGATC 5 cut(s) 795, 1120, 1374, 2400, 2624
AcoI YGGCCR 3 cut(s) 661, 1696, 2762
AcuI CTGAAG 5 cut(s) 235, 2069, 2207, 2455, 2790
AfaI GTAC 3 cut(s) 155, 2099, 2189
AfiI CCNNNNNNNGG 4 cut(s) 395, 467, 1595, 2998
AflII CTTAAG 1 cut(s) 1517
AjnI CCWGG 1 cut(s) 2554
Alw21I GWGCWC 1 cut(s) 2861
Alw26I GTCTC 5 cut(s) 2, 343, 1151, 1155, 1948
Alw44I GTGCAC 1 cut(s) 2857
AlwI GGATC 5 cut(s) 795, 1120, 1374, 2400, 2624
AlwNI CAGNNNCTG 2 cut(s) 467, 2824
Ama87I CYCGRG 3 cut(s) 1148, 2674, 2707
AoxI GGCC 8 cut(s) 57, 458, 661, 1468, 1586, 1696, 2327, 2762
ApaLI GTGCAC 1 cut(s) 2857
Asp700I GAANNNNTTC 3 cut(s) 1263, 2651, 2667
AspS9I GGNCC 4 cut(s) 57, 1535, 1577, 1586
AsuC2I CCSGG 4 cut(s) 2215, 2675, 2676, 2885
AsuII TTCGAA 1 cut(s) 1917
AvaI CYCGRG 3 cut(s) 1148, 2674, 2707
AvaII GGWCC 2 cut(s) 1535, 1577
AxyI CCTNAGG 1 cut(s) 900
BaeGI GKGCMC 3 cut(s) 333, 2861, 2883
BaeI ACNNNNGTAYC 2 cut(s) 2055, 2088
BalI TGGCCA 1 cut(s) 1698
BbsI GAAGAC 2 cut(s) 1184, 2628
Bbv12I GWGCWC 1 cut(s) 2861
BciT130I CCWGG 1 cut(s) 2556
BciVI GTATCC 2 cut(s) 1506, 2056
BclI TGATCA 3 cut(s) 597, 1498, 2697
BcnI CCSGG 4 cut(s) 2215, 2675, 2676, 2885
BcoDI GTCTC 5 cut(s) 2, 343, 1151, 1155, 1948
BfaI CTAG 6 cut(s) 570, 645, 1073, 1632, 1874, 2903
BfmI CTRYAG 4 cut(s) 1023, 2331, 2816, 2911
BfrI CTTAAG 1 cut(s) 1517
BfuI GTATCC 2 cut(s) 1506, 2056
BmcAI AGTACT 1 cut(s) 155
Bme1390I CCNGG 5 cut(s) 2215, 2556, 2675, 2676, 2885
Bme18I GGWCC 2 cut(s) 1535, 1577
BmeT110I CYCGRG 3 cut(s) 1148, 2674, 2707
BmgT120I GGNCC 4 cut(s) 57, 1535, 1577, 1586
BmiI GGNNCC 1 cut(s) 2971
BmrFI CCNGG 5 cut(s) 2215, 2556, 2675, 2676, 2885
BmsI GCATC 5 cut(s) 828, 1887, 1994, 2162, 2608
BpiI GAAGAC 2 cut(s) 1184, 2628
BplI GAGNNNNNCTC 2 cut(s) 608, 640
BpmI CTGGAG 3 cut(s) 1797, 1982, 2965
Bpu14I TTCGAA 1 cut(s) 1917
BpuEI CTTGAG 3 cut(s) 886, 2132, 2951
BpuMI CCSGG 4 cut(s) 2215, 2675, 2676, 2885
BsaAI YACGTR 1 cut(s) 2851
BsaBI GATNNNNATC 2 cut(s) 2724, 2941
BsaI GGTCTC 1 cut(s) 1155
BsaXI ACNNNNNCTCC 2 cut(s) 1008, 1038
Bsc4I CCNNNNNNNGG 4 cut(s) 395, 467, 1595, 2998
Bse118I RCCGGY 2 cut(s) 2760, 2866
Bse1I ACTGG 7 cut(s) 151, 615, 831, 984, 2237, 2650, 2829
Bse21I CCTNAGG 1 cut(s) 900
Bse3DI GCAATG 2 cut(s) 2409, 3009
Bse8I GATNNNNATC 2 cut(s) 2724, 2941
BseBI CCWGG 1 cut(s) 2556
BseGI GGATG 9 cut(s) 729, 880, 928, 1336, 1922, 2177, 2266, 2428, 2794
BseJI GATNNNNATC 2 cut(s) 2724, 2941
BseLI CCNNNNNNNGG 4 cut(s) 395, 467, 1595, 2998
BseMI GCAATG 2 cut(s) 2409, 3009
BseMII CTCAG 7 cut(s) 92, 251, 330, 639, 914, 1184, 1296
BseNI ACTGG 7 cut(s) 151, 615, 831, 984, 2237, 2650, 2829
BseRI GAGGAG 3 cut(s) 186, 1029, 1032
BseSI GKGCMC 3 cut(s) 333, 2861, 2883
Bsh1236I CGCG 1 cut(s) 1645
Bsh1285I CGRYCG 1 cut(s) 2939
BshFI GGCC 8 cut(s) 59, 460, 663, 1470, 1588, 1698, 2329, 2764
BsiEI CGRYCG 1 cut(s) 2939
BsiHKAI GWGCWC 1 cut(s) 2861
BsiHKCI CYCGRG 3 cut(s) 1148, 2674, 2707
BsiSI CCGG 6 cut(s) 650, 2215, 2675, 2761, 2867, 2885
BslFI GGGAC 2 cut(s) 496, 558
BslI CCNNNNNNNGG 4 cut(s) 395, 467, 1595, 2998
BsmAI GTCTC 5 cut(s) 2, 343, 1151, 1155, 1948
BsmBI CGTCTC 1 cut(s) 1151
BsmFI GGGAC 2 cut(s) 496, 558
BsmI GAATGC 2 cut(s) 1599, 1830
BsnI GGCC 8 cut(s) 59, 460, 663, 1470, 1588, 1698, 2329, 2764
Bso31I GGTCTC 1 cut(s) 1155
BsoBI CYCGRG 3 cut(s) 1148, 2674, 2707
Bsp119I TTCGAA 1 cut(s) 1917
Bsp1286I GDGCHC 3 cut(s) 333, 2861, 2883
Bsp1407I TGTACA 1 cut(s) 2187
BspACI CCGC 4 cut(s) 664, 1101, 1214, 2060
BspANI GGCC 8 cut(s) 59, 460, 663, 1470, 1588, 1698, 2329, 2764
BspCNI CTCAG 7 cut(s) 91, 250, 329, 638, 913, 1183, 1297
BspFNI CGCG 1 cut(s) 1645
BspHI TCATGA 3 cut(s) 1569, 1726, 2512
BspLI GGNNCC 1 cut(s) 2971
BspMAI CTGCAG 2 cut(s) 2335, 2820
BspPI GGATC 5 cut(s) 795, 1120, 1374, 2400, 2624
BspQI GCTCTTC 1 cut(s) 186
BspT104I TTCGAA 1 cut(s) 1917
BspTI CTTAAG 1 cut(s) 1517
BspTNI GGTCTC 1 cut(s) 1155
BsrDI GCAATG 2 cut(s) 2409, 3009
BsrFI RCCGGY 2 cut(s) 2760, 2866
BsrGI TGTACA 1 cut(s) 2187
BsrI ACTGG 7 cut(s) 151, 615, 831, 984, 2237, 2650, 2829
BssAI RCCGGY 2 cut(s) 2760, 2866
BssT1I CCWWGG 4 cut(s) 579, 918, 1480, 1531
Bst2UI CCWGG 1 cut(s) 2556
Bst4CI ACNGT 6 cut(s) 1264, 1389, 2127, 2179, 2683, 2695
Bst6I CTCTTC 3 cut(s) 9, 186, 2588
BstAFI CTTAAG 1 cut(s) 1517
BstAUI TGTACA 1 cut(s) 2187
BstBAI YACGTR 1 cut(s) 2851
BstBI TTCGAA 1 cut(s) 1917
BstC8I GCNNGC 4 cut(s) 287, 2331, 2526, 2762
BstF5I GGATG 9 cut(s) 729, 880, 928, 1336, 1922, 2177, 2266, 2428, 2794
BstFNI CGCG 1 cut(s) 1645
BstMAI GTCTC 5 cut(s) 2, 343, 1151, 1155, 1948
BstMCI CGRYCG 1 cut(s) 2939
BstNI CCWGG 1 cut(s) 2556
BstNSI RCATGY 1 cut(s) 719
BstSCI CCNGG 5 cut(s) 2213, 2554, 2673, 2674, 2883
BstSFI CTRYAG 4 cut(s) 1023, 2331, 2816, 2911
BstSLI GKGCMC 3 cut(s) 333, 2861, 2883
BstSNI TACGTA 1 cut(s) 2851
BstUI CGCG 1 cut(s) 1645
BstV2I GAAGAC 2 cut(s) 1184, 2628
BstX2I RGATCY 1 cut(s) 2392
BstXI CCANNNNNNTGG 1 cut(s) 991
BstYI RGATCY 1 cut(s) 2392
Bsu36I CCTNAGG 1 cut(s) 900
BsuI GTATCC 2 cut(s) 1506, 2056
BsuRI GGCC 8 cut(s) 59, 460, 663, 1470, 1588, 1698, 2329, 2764
BtsCI GGATG 9 cut(s) 729, 880, 928, 1336, 1922, 2177, 2266, 2428, 2794
BtsI GCAGTG 3 cut(s) 1742, 1825, 2589
BtsIMutI CAGTG 4 cut(s) 1302, 1742, 1825, 2589
Cac8I GCNNGC 4 cut(s) 287, 2331, 2526, 2762
CaiI CAGNNNCTG 2 cut(s) 467, 2824
CciI TCATGA 3 cut(s) 1569, 1726, 2512
Cfr10I RCCGGY 2 cut(s) 2760, 2866
Cfr13I GGNCC 4 cut(s) 57, 1535, 1577, 1586
Cfr9I CCCGGG 1 cut(s) 2674
CseI GACGC 2 cut(s) 1133, 1651
Csp6I GTAC 3 cut(s) 154, 2098, 2188
CviQI GTAC 3 cut(s) 154, 2098, 2188
DrdI GACNNNNNNGTC 1 cut(s) 16
DseDI GACNNNNNNGTC 1 cut(s) 16
EaeI YGGCCR 3 cut(s) 661, 1696, 2762
Eam1104I CTCTTC 3 cut(s) 9, 186, 2588
EarI CTCTTC 3 cut(s) 9, 186, 2588
Eco105I TACGTA 1 cut(s) 2851
Eco130I CCWWGG 4 cut(s) 579, 918, 1480, 1531
Eco31I GGTCTC 1 cut(s) 1155
Eco47I GGWCC 2 cut(s) 1535, 1577
Eco57I CTGAAG 5 cut(s) 235, 2069, 2207, 2455, 2790
Eco81I CCTNAGG 1 cut(s) 900
Eco88I CYCGRG 3 cut(s) 1148, 2674, 2707
EcoO109I RGGNCCY 1 cut(s) 1577
EcoRI GAATTC 3 cut(s) 689, 1613, 1659
EcoRII CCWGG 1 cut(s) 2554
EcoT14I CCWWGG 4 cut(s) 579, 918, 1480, 1531
EcoT22I ATGCAT 1 cut(s) 717
ErhI CCWWGG 4 cut(s) 579, 918, 1480, 1531
Esp3I CGTCTC 1 cut(s) 1151
FalI AAGNNNNNCTT 2 cut(s) 734, 766
FaqI GGGAC 2 cut(s) 496, 558
FbaI TGATCA 3 cut(s) 597, 1498, 2697
FokI GGATG 9 cut(s) 716, 887, 935, 1343, 1909, 2184, 2253, 2435, 2801
FspBI CTAG 6 cut(s) 570, 645, 1073, 1632, 1874, 2903
GsuI CTGGAG 3 cut(s) 1797, 1982, 2965
HaeIII GGCC 8 cut(s) 59, 460, 663, 1470, 1588, 1698, 2329, 2764
HapII CCGG 6 cut(s) 650, 2215, 2675, 2761, 2867, 2885
HgaI GACGC 2 cut(s) 1133, 1651
HindIII AAGCTT 4 cut(s) 704, 1487, 1682, 3038
HpaII CCGG 6 cut(s) 650, 2215, 2675, 2761, 2867, 2885
Hpy166II GTNNAC 7 cut(s) 1427, 1868, 2123, 2689, 2802, 2830, 2859
Hpy8I GTNNAC 7 cut(s) 1427, 1868, 2123, 2689, 2802, 2830, 2859
HpyCH4III ACNGT 6 cut(s) 1264, 1389, 2127, 2179, 2683, 2695
HpyCH4IV ACGT 1 cut(s) 2850
HpySE526I ACGT 1 cut(s) 2850
KroI GCCGGC 1 cut(s) 2760
KroNI GCCGGC 1 cut(s) 2762
Ksp22I TGATCA 3 cut(s) 597, 1498, 2697
LguI GCTCTTC 1 cut(s) 186
LmnI GCTCC 4 cut(s) 535, 1019, 1447, 2975
LweI GCATC 5 cut(s) 828, 1887, 1994, 2162, 2608
MaeI CTAG 6 cut(s) 570, 645, 1073, 1632, 1874, 2903
MaeII ACGT 1 cut(s) 2850
MaeIII GTNAC 8 cut(s) 26, 445, 770, 1096, 1702, 2260, 2361, 2558
MfeI CAATTG 1 cut(s) 1899
MflI RGATCY 1 cut(s) 2392
MhlI GDGCHC 3 cut(s) 333, 2861, 2883
MlsI TGGCCA 1 cut(s) 1698
MluNI TGGCCA 1 cut(s) 1698
MlyI GAGTC 4 cut(s) 26, 458, 949, 1575
MmeI TCCRAC 3 cut(s) 718, 2146, 2400
Mox20I TGGCCA 1 cut(s) 1698
Mph1103I ATGCAT 1 cut(s) 717
MroNI GCCGGC 1 cut(s) 2760
MroXI GAANNNNTTC 3 cut(s) 1263, 2651, 2667
MscI TGGCCA 1 cut(s) 1698
MslI CAYNNNNRTG 3 cut(s) 552, 1121, 2742
Msp20I TGGCCA 1 cut(s) 1698
MspA1I CMGCKG 1 cut(s) 2002
MspCI CTTAAG 1 cut(s) 1517
MspI CCGG 6 cut(s) 650, 2215, 2675, 2761, 2867, 2885
MspR9I CCNGG 5 cut(s) 2215, 2556, 2675, 2676, 2885
MunI CAATTG 1 cut(s) 1899
Mva1269I GAATGC 2 cut(s) 1599, 1830
MvaI CCWGG 1 cut(s) 2556
MvnI CGCG 1 cut(s) 1645
NaeI GCCGGC 1 cut(s) 2762
NciI CCSGG 4 cut(s) 2215, 2675, 2676, 2885
NgoMIV GCCGGC 1 cut(s) 2760
NlaIV GGNNCC 1 cut(s) 2971
NmuCI GTSAC 4 cut(s) 445, 770, 1096, 2361
NsiI ATGCAT 1 cut(s) 717
NspI RCATGY 1 cut(s) 719
NspV TTCGAA 1 cut(s) 1917
PaeR7I CTCGAG 1 cut(s) 1148
PagI TCATGA 3 cut(s) 1569, 1726, 2512
PciSI GCTCTTC 1 cut(s) 186
PctI GAATGC 2 cut(s) 1599, 1830
PdiI GCCGGC 1 cut(s) 2762
PdmI GAANNNNTTC 3 cut(s) 1263, 2651, 2667
PfeI GAWTC 7 cut(s) 241, 356, 670, 1309, 1741, 1955, 2942
PflMI CCANNNNNTGG 2 cut(s) 467, 1595
Ple19I CGATCG 1 cut(s) 2939
PleI GAGTC 4 cut(s) 25, 458, 948, 1574
PpsI GAGTC 4 cut(s) 25, 458, 948, 1574
Ppu21I YACGTR 1 cut(s) 2851
PpuMI RGGWCCY 1 cut(s) 1577
Psp5II RGGWCCY 1 cut(s) 1577
Psp6I CCWGG 1 cut(s) 2554
PspGI CCWGG 1 cut(s) 2554
PspN4I GGNNCC 1 cut(s) 2971
PspPI GGNCC 4 cut(s) 57, 1535, 1577, 1586
PspPPI RGGWCCY 1 cut(s) 1577
PstI CTGCAG 2 cut(s) 2335, 2820
PstNI CAGNNNCTG 2 cut(s) 467, 2824
PsuI RGATCY 1 cut(s) 2392
PvuI CGATCG 1 cut(s) 2939
PvuII CAGCTG 1 cut(s) 2002
RsaI GTAC 3 cut(s) 155, 2099, 2189
RsaNI GTAC 3 cut(s) 154, 2098, 2188
RseI CAYNNNNRTG 3 cut(s) 552, 1121, 2742
SapI GCTCTTC 1 cut(s) 186
Sau96I GGNCC 4 cut(s) 57, 1535, 1577, 1586
ScaI AGTACT 1 cut(s) 155
SchI GAGTC 4 cut(s) 26, 458, 949, 1575
ScrFI CCNGG 5 cut(s) 2215, 2556, 2675, 2676, 2885
SduI GDGCHC 3 cut(s) 333, 2861, 2883
SfaNI GCATC 5 cut(s) 828, 1887, 1994, 2162, 2608
SfcI CTRYAG 4 cut(s) 1023, 2331, 2816, 2911
Sfr274I CTCGAG 1 cut(s) 1148
SfuI TTCGAA 1 cut(s) 1917
SinI GGWCC 2 cut(s) 1535, 1577
SlaI CTCGAG 1 cut(s) 1148
SmaI CCCGGG 1 cut(s) 2676
SmiMI CAYNNNNRTG 3 cut(s) 552, 1121, 2742
SmlI CTYRAG 5 cut(s) 865, 1148, 1517, 2147, 2930
SmoI CTYRAG 5 cut(s) 865, 1148, 1517, 2147, 2930
SnaBI TACGTA 1 cut(s) 2851
SsiI CCGC 4 cut(s) 664, 1101, 1214, 2060
SspMI CTAG 6 cut(s) 570, 645, 1073, 1632, 1874, 2903
StyD4I CCNGG 5 cut(s) 2213, 2554, 2673, 2674, 2883
StyI CCWWGG 4 cut(s) 579, 918, 1480, 1531
TaaI ACNGT 6 cut(s) 1264, 1389, 2127, 2179, 2683, 2695
TaiI ACGT 1 cut(s) 2853
TaqI TCGA 7 cut(s) 341, 592, 687, 1149, 1159, 1917, 2280
TaqII GACCGA 1 cut(s) 1552
TatI WGTACW 3 cut(s) 153, 2097, 2187
TauI GCSGC 1 cut(s) 666
TfiI GAWTC 7 cut(s) 241, 356, 670, 1309, 1741, 1955, 2942
TscAI CASTG 4 cut(s) 1309, 1742, 1832, 2589
TseFI GTSAC 4 cut(s) 445, 770, 1096, 2361
Tsp45I GTSAC 4 cut(s) 445, 770, 1096, 2361
TspGWI ACGGA 3 cut(s) 1084, 1613, 2622
TspMI CCCGGG 1 cut(s) 2674
TspRI CASTG 4 cut(s) 1309, 1742, 1832, 2589
Van91I CCANNNNNTGG 2 cut(s) 467, 1595
Vha464I CTTAAG 1 cut(s) 1517
VneI GTGCAC 1 cut(s) 2857
VpaK11BI GGWCC 2 cut(s) 1535, 1577
XbaI TCTAGA 1 cut(s) 1631
XceI RCATGY 1 cut(s) 719
XcmI CCANNNNNNNNNTGG 2 cut(s) 1115, 1478
XhoI CTCGAG 1 cut(s) 1148
XmaI CCCGGG 1 cut(s) 2674
XmnI GAANNNNTTC 3 cut(s) 1263, 2651, 2667
XspI CTAG 6 cut(s) 570, 645, 1073, 1632, 1874, 2903
ZrmI AGTACT 1 cut(s) 155
Zsp2I ATGCAT 1 cut(s) 717
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.