FvH4_4g31420

No apical meristem (NAM) protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0016837
Physical Location & Seq
Reverse (-)
30563842 .. 30566034
2193 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g31420.t1

Sequence Viewer

Length: 1380 bp
ATGGATCAGGAGAGAAGTAGTAGCGGTGATATGAGTGCAGCAGATCAAGATAAAATAGATGACGTGATGCTGCCAGGGTTTCGTTTTCACCCTACAGATGAGGAGCTTGTTGGTTTTTACCTCAAGAGAAAGATCCAGCAACGCCCTCTCTCGATCGAGCTCATAAAGCAACTCGACATCTATAAGTTCGATCCATGGGATCTTCCAAAGTTGGCAGCCAGTGGGGAGAAGGAGTGGTACTTCTACTGTCCGAGGGACAGGAAATACAGAAACAGCACAAGGCCTAACCGGGTCACCGGAGCCGGGTTCTGGAAAGCCACGGGTACCGACCGGCCCATTTACTCGTCGGAAGGTAACTCGAACAAGTGTATAGGGTTGAAGAAGTCCCTTGTTTTCTACAAAGGTAGAGCTGCCAAAGGGGTCAAAACCGACTGGATGATGCATGAGTTTCGCTTACCTTCTCTCACTGATTCCTCAGTAGTACTCCCATCAAAGAGATCCTTCATGGACAAAATTGCCATTCCTGCAAATGATTCATGGGCAATATGCAGGATATTCAAGAAAACAAATACCAGTGCGCATCAAAGAGCCATTTCTCATCATTCTTGGGTGTCTCAGACCTTGCCTGAACCAAACACATTTCAGGATCATGTGTTAGGCAGCTCCAGATTACGTGCACAAACCACTAACACTACTCAGTATAGTGGTAATATTGATACACAACAGATCTCAACTTCCACCACAACCAGTACTCTTTCCCCAGTAGATAATTATTATGCTAATAATCCCTACAAAACTTTACACCCATCAATCCCTAGCAATCTTACACCCTATCATCAGTACTTCCCCATTTCCAACGCCGGAGACTACTTTAACCCTAATTTCACATTTTCACCTTTGGAAAATCCGGCAGCCAAATGTTCCGTGGATGTTTCGTCCTTGTTGTTGAACATGTCGTCTTCAGTGCTCGGAGATTTCGGAACCAAGCTGGCCTCGGCTGAGAGTAGTACTACTTTCGACTTTAGCAGTACTACTGGTTCTCAGGAGCAACAGTGTAATAACGGCTTCTCCTCGTCCTTGACGACAATACCACACCATGAACTGATGCATGGTAACGGCGTTGTTGGTAGTCATGATCACAGCAGCATCGATGCCTTGATGAAGAATATAACGAATCATGTGAACTCGAACGCAACAGAAACAGATGATCATGAACACTGGGAGAGTAGTCTGCAATCATCATCGATTGGATTTCCGTTCATGAGTAGTTTACCAGTAATTCCTATGAATATAGGAGGTGGGGATGCATGGAAGTCCAACTTGACGTGGGACTCTTCACCATGTCCGAGTGAAATGTCCACTACCAGATGCTATTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

460

Amino Acids

51.18

Weight (kDa)

6.46

Isoelectric Point (pI)

48.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 25 - 152 7e-48 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016837)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g31420
malus_domestica MD13G1072500.v1.1 MD16G1073300.v1.1
prunus_persica Prupe.1G274300_v2.0.a1
pyrus_communis pycom13g06500
rosa_chinensis RchiOBHm_Chr4g0439901
rosa_laevigata RLG00000006228
rosa_multiflora Rmu_sc0000497.1_g000002
rosa_roxburghii Rroxscaffold_5G00380850
rosa_rugosa Rorug04G0322200
rosa_samantha Rh4AG373200 Rh4CG400000 Rh4DG379800
rosa_wichuraiana Rw4G031910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 579
Acc65I GGTACC 1 cut(s) 323
AccB1I GGYRCC 1 cut(s) 323
AciI CCGC 1 cut(s) 24
AclWI GGATC 6 cut(s) 12, 127, 185, 207, 492, 654
AcuI CTGAAG 1 cut(s) 945
AfaI GTAC 7 cut(s) 239, 325, 483, 751, 842, 1009, 1030
AfiI CCNNNNNNNGG 2 cut(s) 303, 309
AflIII ACRYGT 1 cut(s) 951
AgsI TTSAA 3 cut(s) 379, 559, 949
AjiI CACGTC 2 cut(s) 64, 1326
AjnI CCWGG 1 cut(s) 73
AluBI AGCT 5 cut(s) 106, 160, 410, 663, 988
AluI AGCT 5 cut(s) 106, 160, 410, 663, 988
Alw21I GWGCWC 3 cut(s) 162, 679, 969
Alw26I GTCTC 2 cut(s) 618, 858
Alw44I GTGCAC 1 cut(s) 675
AlwI GGATC 6 cut(s) 12, 127, 185, 207, 492, 654
AoxI GGCC 3 cut(s) 281, 332, 990
ApaLI GTGCAC 1 cut(s) 675
ApeKI GCWGC 7 cut(s) 38, 70, 215, 410, 660, 911, 1143
Asp718I GGTACC 1 cut(s) 323
AspLEI GCGC 1 cut(s) 580
AspS9I GGNCC 1 cut(s) 333
AsuC2I CCSGG 2 cut(s) 290, 304
AsuHPI GGTGA 5 cut(s) 38, 80, 286, 885, 1329
BaeGI GKGCMC 1 cut(s) 679
BanI GGYRCC 1 cut(s) 323
BanII GRGCYC 1 cut(s) 162
BarI GAAGNNNNNNTAC 2 cut(s) 221, 253
BbsI GAAGAC 1 cut(s) 951
Bbv12I GWGCWC 3 cut(s) 162, 679, 969
BbvI GCAGC 7 cut(s) 50, 57, 227, 397, 672, 923, 1155
BccI CCATC 2 cut(s) 496, 814
BceAI ACGGC 2 cut(s) 1078, 1132
BcgI CGANNNNNNTGC 2 cut(s) 431, 465
BciT130I CCWGG 1 cut(s) 75
BclI TGATCA 2 cut(s) 1135, 1207
BcnI CCSGG 2 cut(s) 290, 304
BcoDI GTCTC 2 cut(s) 618, 858
BfaI CTAG 1 cut(s) 816
BfmI CTRYAG 1 cut(s) 93
BglII AGATCT 1 cut(s) 726
BisI GCNGC 7 cut(s) 39, 71, 216, 411, 661, 912, 1144
BlsI GCNGC 7 cut(s) 40, 72, 217, 412, 662, 913, 1145
BmcAI AGTACT 5 cut(s) 483, 751, 842, 1009, 1030
Bme1390I CCNGG 3 cut(s) 75, 290, 304
BmgBI CACGTC 2 cut(s) 64, 1326
BmgT120I GGNCC 1 cut(s) 333
BmiI GGNNCC 3 cut(s) 301, 325, 982
BmrFI CCNGG 3 cut(s) 75, 290, 304
BmrI ACTGGG 2 cut(s) 755, 1228
BmsI GCATC 8 cut(s) 57, 429, 589, 1095, 1141, 1155, 1294, 1358
BmuI ACTGGG 2 cut(s) 755, 1228
BpiI GAAGAC 1 cut(s) 951
BpmI CTGGAG 1 cut(s) 649
BpuEI CTTGAG 1 cut(s) 107
BpuMI CCSGG 2 cut(s) 290, 304
Bsa29I ATCGAT 2 cut(s) 1149, 1244
BsaAI YACGTR 1 cut(s) 674
BsaJI CCNNGG 6 cut(s) 74, 194, 251, 318, 924, 993
BsaWI WCCGGW 1 cut(s) 296
BsaXI ACNNNNNCTCC 6 cut(s) 218, 248, 1037, 1052, 1067, 1082
Bsc4I CCNNNNNNNGG 2 cut(s) 303, 309
Bse118I RCCGGY 1 cut(s) 330
Bse1I ACTGG 8 cut(s) 219, 437, 573, 747, 761, 1039, 1223, 1274
BseBI CCWGG 1 cut(s) 75
BseCI ATCGAT 2 cut(s) 1149, 1244
BseDI CCNNGG 6 cut(s) 74, 194, 251, 318, 924, 993
BseGI GGATG 3 cut(s) 441, 934, 1309
BseLI CCNNNNNNNGG 2 cut(s) 303, 309
BseMII CTCAG 5 cut(s) 489, 629, 710, 990, 1055
BseNI ACTGG 8 cut(s) 219, 437, 573, 747, 761, 1039, 1223, 1274
BseRI GAGGAG 2 cut(s) 116, 1060
BseSI GKGCMC 1 cut(s) 679
BseXI GCAGC 7 cut(s) 50, 57, 227, 397, 672, 923, 1155
BsgI GTGCAG 1 cut(s) 57
Bsh1285I CGRYCG 2 cut(s) 156, 331
BshFI GGCC 3 cut(s) 283, 334, 992
BshNI GGYRCC 1 cut(s) 323
BshVI ATCGAT 2 cut(s) 1149, 1244
BsiEI CGRYCG 2 cut(s) 156, 331
BsiHKAI GWGCWC 3 cut(s) 162, 679, 969
BsiSI CCGG 6 cut(s) 289, 297, 303, 331, 861, 908
BslFI GGGAC 3 cut(s) 269, 370, 1343
BslI CCNNNNNNNGG 2 cut(s) 303, 309
BsmAI GTCTC 2 cut(s) 618, 858
BsmFI GGGAC 3 cut(s) 269, 370, 1343
BsnI GGCC 3 cut(s) 283, 334, 992
Bsp1286I GDGCHC 3 cut(s) 162, 679, 969
Bsp19I CCATGG 1 cut(s) 194
BspACI CCGC 1 cut(s) 24
BspANI GGCC 3 cut(s) 283, 334, 992
BspCNI CTCAG 5 cut(s) 488, 628, 709, 991, 1054
BspDI ATCGAT 2 cut(s) 1149, 1244
BspHI TCATGA 3 cut(s) 1132, 1210, 1260
BspLI GGNNCC 3 cut(s) 301, 325, 982
BspPI GGATC 6 cut(s) 12, 127, 185, 207, 492, 654
BspT107I GGYRCC 1 cut(s) 323
BsrFI RCCGGY 1 cut(s) 330
BsrI ACTGG 8 cut(s) 219, 437, 573, 747, 761, 1039, 1223, 1274
BssAI RCCGGY 1 cut(s) 330
BssECI CCNNGG 6 cut(s) 74, 194, 251, 318, 924, 993
BssT1I CCWWGG 1 cut(s) 194
Bst2UI CCWGG 1 cut(s) 75
Bst4CI ACNGT 2 cut(s) 248, 1053
Bst6I CTCTTC 1 cut(s) 1339
BstBAI YACGTR 1 cut(s) 674
BstC8I GCNNGC 1 cut(s) 990
BstDEI CTNAG 6 cut(s) 475, 615, 696, 999, 1041, 1377
BstDSI CCRYGG 3 cut(s) 194, 318, 924
BstEII GGTNACC 1 cut(s) 292
BstF5I GGATG 3 cut(s) 441, 934, 1309
BstHHI GCGC 1 cut(s) 580
BstMAI GTCTC 2 cut(s) 618, 858
BstMCI CGRYCG 2 cut(s) 156, 331
BstMWI GCNNNNNNNGC 2 cut(s) 166, 524
BstNI CCWGG 1 cut(s) 75
BstNSI RCATGY 1 cut(s) 955
BstPI GGTNACC 1 cut(s) 292
BstSCI CCNGG 3 cut(s) 73, 288, 302
BstSFI CTRYAG 1 cut(s) 93
BstSLI GKGCMC 1 cut(s) 679
BstV1I GCAGC 7 cut(s) 50, 57, 227, 397, 672, 923, 1155
BstV2I GAAGAC 1 cut(s) 951
BstX2I RGATCY 4 cut(s) 132, 199, 497, 726
BstYI RGATCY 4 cut(s) 132, 199, 497, 726
Bsu15I ATCGAT 2 cut(s) 1149, 1244
BsuRI GGCC 3 cut(s) 283, 334, 992
BsuTUI ATCGAT 2 cut(s) 1149, 1244
BtgI CCRYGG 3 cut(s) 194, 318, 924
BtrI CACGTC 2 cut(s) 64, 1326
BtsCI GGATG 3 cut(s) 441, 934, 1309
BtsIMutI CAGTG 6 cut(s) 226, 465, 580, 969, 1058, 1216
Cac8I GCNNGC 1 cut(s) 990
CciI TCATGA 3 cut(s) 1132, 1210, 1260
CfoI GCGC 1 cut(s) 580
Cfr10I RCCGGY 1 cut(s) 330
Cfr13I GGNCC 1 cut(s) 333
ClaI ATCGAT 2 cut(s) 1149, 1244
Csp6I GTAC 7 cut(s) 238, 324, 482, 750, 841, 1008, 1029
CviQI GTAC 7 cut(s) 238, 324, 482, 750, 841, 1008, 1029
DdeI CTNAG 6 cut(s) 475, 615, 696, 999, 1041, 1377
Eam1104I CTCTTC 1 cut(s) 1339
EarI CTCTTC 1 cut(s) 1339
Ecl136II GAGCTC 1 cut(s) 160
Eco130I CCWWGG 1 cut(s) 194
Eco147I AGGCCT 1 cut(s) 283
Eco24I GRGCYC 1 cut(s) 162
Eco53kI GAGCTC 1 cut(s) 160
Eco57I CTGAAG 1 cut(s) 945
Eco91I GGTNACC 1 cut(s) 292
EcoICRI GAGCTC 1 cut(s) 160
EcoO65I GGTNACC 1 cut(s) 292
EcoRII CCWGG 1 cut(s) 73
EcoT14I CCWWGG 1 cut(s) 194
EcoT22I ATGCAT 3 cut(s) 444, 1110, 1309
EcoT38I GRGCYC 1 cut(s) 162
ErhI CCWWGG 1 cut(s) 194
FalI AAGNNNNNCTT 4 cut(s) 485, 517, 1304, 1336
FaqI GGGAC 3 cut(s) 269, 370, 1343
FbaI TGATCA 2 cut(s) 1135, 1207
Fnu4HI GCNGC 7 cut(s) 39, 71, 216, 411, 661, 912, 1144
FokI GGATG 3 cut(s) 448, 941, 1316
FriOI GRGCYC 1 cut(s) 162
Fsp4HI GCNGC 7 cut(s) 39, 71, 216, 411, 661, 912, 1144
FspAI RTGCGCAY 1 cut(s) 579
FspBI CTAG 1 cut(s) 816
FspI TGCGCA 1 cut(s) 579
GlaI GCGC 1 cut(s) 579
GluI GCNGC 7 cut(s) 39, 71, 216, 411, 661, 912, 1144
GsuI CTGGAG 1 cut(s) 649
HaeIII GGCC 3 cut(s) 283, 334, 992
HapII CCGG 6 cut(s) 289, 297, 303, 331, 861, 908
HhaI GCGC 1 cut(s) 580
Hin6I GCGC 1 cut(s) 578
HinP1I GCGC 1 cut(s) 578
HinfI GANTC 4 cut(s) 470, 533, 1174, 1331
HpaII CCGG 6 cut(s) 289, 297, 303, 331, 861, 908
HphI GGTGA 5 cut(s) 38, 80, 286, 885, 1329
Hpy166II GTNNAC 4 cut(s) 677, 1183, 1271, 1359
Hpy188I TCNGA 6 cut(s) 252, 349, 618, 971, 980, 1347
Hpy8I GTNNAC 4 cut(s) 677, 1183, 1271, 1359
Hpy99I CGWCG 1 cut(s) 349
HpyAV CCTTC 4 cut(s) 223, 344, 468, 511
HpyCH4III ACNGT 2 cut(s) 248, 1053
HpyCH4IV ACGT 3 cut(s) 63, 673, 1325
HpyCH4V TGCA 8 cut(s) 38, 442, 527, 549, 677, 1108, 1234, 1307
HpyF10VI GCNNNNNNNGC 2 cut(s) 166, 524
HpyF3I CTNAG 6 cut(s) 475, 615, 696, 999, 1041, 1377
HpySE526I ACGT 3 cut(s) 63, 673, 1325
HspAI GCGC 1 cut(s) 578
KpnI GGTACC 1 cut(s) 327
Ksp22I TGATCA 2 cut(s) 1135, 1207
LmnI GCTCC 4 cut(s) 103, 299, 668, 1045
Lsp1109I GCAGC 7 cut(s) 50, 57, 227, 397, 672, 923, 1155
LweI GCATC 8 cut(s) 57, 429, 589, 1095, 1141, 1155, 1294, 1358
MaeI CTAG 1 cut(s) 816
MaeII ACGT 3 cut(s) 63, 673, 1325
MaeIII GTNAC 3 cut(s) 292, 353, 1112
MboII GAAGA 5 cut(s) 194, 391, 951, 1174, 1326
MflI RGATCY 4 cut(s) 132, 199, 497, 726
MhlI GDGCHC 3 cut(s) 162, 679, 969
MluCI AATT 4 cut(s) 513, 769, 880, 1278
MlyI GAGTC 1 cut(s) 1325
MmeI TCCRAC 3 cut(s) 327, 879, 1341
MnlI CCTC 8 cut(s) 94, 131, 156, 246, 484, 1003, 1081, 1289
Mph1103I ATGCAT 3 cut(s) 444, 1110, 1309
MseI TTAA 1 cut(s) 873
MspI CCGG 6 cut(s) 289, 297, 303, 331, 861, 908
MspR9I CCNGG 3 cut(s) 75, 290, 304
MvaI CCWGG 1 cut(s) 75
MwoI GCNNNNNNNGC 2 cut(s) 166, 524
NciI CCSGG 2 cut(s) 290, 304
NcoI CCATGG 1 cut(s) 194
NlaIV GGNNCC 3 cut(s) 301, 325, 982
NmeAIII GCCGAG 1 cut(s) 974
NmuCI GTSAC 1 cut(s) 292
NsbI TGCGCA 1 cut(s) 579
NsiI ATGCAT 3 cut(s) 444, 1110, 1309
NspI RCATGY 1 cut(s) 955
PagI TCATGA 3 cut(s) 1132, 1210, 1260
PceI AGGCCT 1 cut(s) 283
PciI ACATGT 1 cut(s) 951
PcsI WCGNNNNNNNCGW 1 cut(s) 1079
PfeI GAWTC 3 cut(s) 470, 533, 1174
PkrI GCNGC 7 cut(s) 40, 72, 217, 412, 662, 913, 1145
Ple19I CGATCG 1 cut(s) 156
PleI GAGTC 1 cut(s) 1325
PpsI GAGTC 1 cut(s) 1325
Ppu21I YACGTR 1 cut(s) 674
PscI ACATGT 1 cut(s) 951
Psp124BI GAGCTC 1 cut(s) 162
Psp6I CCWGG 1 cut(s) 73
PspEI GGTNACC 1 cut(s) 292
PspGI CCWGG 1 cut(s) 73
PspN4I GGNNCC 3 cut(s) 301, 325, 982
PspPI GGNCC 1 cut(s) 333
PsrI GAACNNNNNNTAC 2 cut(s) 1021, 1053
PsuI RGATCY 4 cut(s) 132, 199, 497, 726
PvuI CGATCG 1 cut(s) 156
RsaI GTAC 7 cut(s) 239, 325, 483, 751, 842, 1009, 1030
RsaNI GTAC 7 cut(s) 238, 324, 482, 750, 841, 1008, 1029
SacI GAGCTC 1 cut(s) 162
SaqAI TTAA 1 cut(s) 873
SatI GCNGC 7 cut(s) 39, 71, 216, 411, 661, 912, 1144
Sau96I GGNCC 1 cut(s) 333
ScaI AGTACT 5 cut(s) 483, 751, 842, 1009, 1030
SchI GAGTC 1 cut(s) 1325
ScrFI CCNGG 3 cut(s) 75, 290, 304
SduI GDGCHC 3 cut(s) 162, 679, 969
SfaNI GCATC 8 cut(s) 57, 429, 589, 1095, 1141, 1155, 1294, 1358
SfcI CTRYAG 1 cut(s) 93
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
Sse9I AATT 4 cut(s) 513, 769, 880, 1278
SseBI AGGCCT 1 cut(s) 283
SsiI CCGC 1 cut(s) 24
SspI AATATT 1 cut(s) 712
SspMI CTAG 1 cut(s) 816
SstI GAGCTC 1 cut(s) 162
StuI AGGCCT 1 cut(s) 283
StyD4I CCNGG 3 cut(s) 73, 288, 302
StyI CCWWGG 1 cut(s) 194
TaaI ACNGT 2 cut(s) 248, 1053
TaiI ACGT 3 cut(s) 66, 676, 1328
TaqI TCGA 9 cut(s) 152, 156, 174, 189, 359, 1017, 1149, 1187, 1244
TasI AATT 4 cut(s) 513, 769, 880, 1278
TatI WGTACW 5 cut(s) 481, 749, 840, 1007, 1028
TfiI GAWTC 3 cut(s) 470, 533, 1174
Tru1I TTAA 1 cut(s) 873
Tru9I TTAA 1 cut(s) 873
TscAI CASTG 6 cut(s) 226, 472, 580, 969, 1058, 1223
TseFI GTSAC 1 cut(s) 292
TseI GCWGC 7 cut(s) 38, 70, 215, 410, 660, 911, 1143
Tsp45I GTSAC 1 cut(s) 292
TspDTI ATGAA 7 cut(s) 493, 525, 1113, 1175, 1227, 1249, 1301
TspGWI ACGGA 2 cut(s) 913, 1245
TspRI CASTG 6 cut(s) 226, 472, 580, 969, 1058, 1223
VneI GTGCAC 1 cut(s) 675
XceI RCATGY 1 cut(s) 955
XcmI CCANNNNNNNNNTGG 1 cut(s) 922
XspI CTAG 1 cut(s) 816
ZrmI AGTACT 5 cut(s) 483, 751, 842, 1009, 1030
Zsp2I ATGCAT 3 cut(s) 444, 1110, 1309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.