Prupe.1G274300_v2.0.a1

No apical meristem (NAM) protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0016837
Physical Location & Seq
Forward (+)
28043845 .. 28045782
1938 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G274300.1

Sequence Viewer

Length: 1449 bp
ATGGATGAGAGAAGTGATATGAATATTATTGGAGGAGATAAAATGGATGAAGTGATGCTTCCGGGGTTTCGTTTTCATCCAACTGATGAGGAGCTTGTTGGGTTTTATCTCAAGAGGAAGATTCAGCAGCGCCCTCTCTCTATTGAGCTCATCAAGCAACTAGACATCTATAAATTTGATCCCTGGGATCTTCCAAAGTTGGCAGCTTCCGGGGAGAAGGAGTGGTATTTCTACTGCCCAAGGGACAGAAAATACAGAAACAGCACAAGGCCGAACCGGGTAACTGGAGCCGGGTTCTGGAAAGCCACGGGAACCGACCGACCCATCTACTCATCCGAAGGTGCATGTAGCTCCAAGTGCATTGGGTTGAAGAAATCACTTGTTTTCTACAAAGGCAGAGCTGCCAAAGGGGTCAAAACCGACTGGATGATGCATGAGTTTCGCTTACCGTCTCTCACCGACTCACTCCAAACAAAGAGATCATCATCATTCATGGACAAAACCATTCCTGCAAATGACTCATGGGCAATATGCAGGATATTCAAGAAAACAAATTCAAGTCATGCTCATCAAAGAGCCCTTTCTCATCACTCTTGGGTGTCTGTCTTGCCTGAAACAAACACATATGATGATCATATGCTAGGCTCCAAAGCTGCACACAGTGCTGCTCATCATCATCACCAACATGAGTTTAGTTCAGAGAGAATGCCATTGACATCAAAAACCAATTCAACCACCAACTTCTGTGCTAACAACAACAATGACATACAAATCTCATCCACCACAAGTTCTATGTCCCCTTTAGATATTTACACTAGCTCCTACAAACCCATGAACCCATTGATGATGGGTTGCAACATCAAACTACCCTATCAGTACTTTCCCATTTCCAATTCCAATGGAGACTACTTTTCTAGCACCCCTAGCTTCACATTTTCATCATCACCTCTAGAAACTCCATCAGGACCGGTGGCTAAATGCGCCGTGGATGTGTCGTCTTTGTTGTTGAATATGTCGTCTTCGATGCTTGGAGATTATAATAGTAGCAACAGCATCAACAAGGCTTCTGCAGAGAGCACTAATTTTGAATTTAGTACCACCACTGGATCACAAGATCAATGTAATGGCGGCTTCTCATCCATGCCATTGCCACATCATCATGAGGTCGCGCAAGGTAATAATAACATGGGCAATGGTCATGACACTGTTGTTGGGTTGATCAAGAACAATGTTTCAAATGTGAACTCGAACTTGACAGAAGACGCAGATGATCAACAATGGGAGACGAATGTGAGATCCAATATTGGGTTTCCCTTGATGATGAGCAATAGTTTACCTTTGCCTTTGAATATAGGAGGAGGGGGAGGAGGAGATGCATGGAAGTCGAGTTTGACGTGGGAGTCTTCACCATGTCCAAGTGAAATGTCCACAACCAGATGCTATACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

483

Amino Acids

53.57

Weight (kDa)

6.78

Isoelectric Point (pI)

46.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016837)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g31420
malus_domestica MD13G1072500.v1.1 MD16G1073300.v1.1
prunus_persica Prupe.1G274300_v2.0.a1
pyrus_communis pycom13g06500
rosa_chinensis RchiOBHm_Chr4g0439901
rosa_laevigata RLG00000006228
rosa_multiflora Rmu_sc0000497.1_g000002
rosa_roxburghii Rroxscaffold_5G00380850
rosa_rugosa Rorug04G0322200
rosa_samantha Rh4AG373200 Rh4CG400000 Rh4DG379800
rosa_wichuraiana Rw4G031910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1038
AasI GACNNNNNNGTC 1 cut(s) 1399
AccII CGCG 1 cut(s) 1169
AciI CCGC 1 cut(s) 1128
AclWI GGATC 4 cut(s) 173, 195, 1114, 1290
AcsI RAATTY 3 cut(s) 173, 553, 1088
AdeI CACNNNGTG 1 cut(s) 662
AfaI GTAC 2 cut(s) 878, 1096
AfiI CCNNNNNNNGG 2 cut(s) 297, 1305
AgeI ACCGGT 1 cut(s) 967
AgsI TTSAA 8 cut(s) 370, 544, 558, 732, 1009, 1088, 1236, 1348
AjiI CACGTC 1 cut(s) 1395
AjnI CCWGG 1 cut(s) 182
AluBI AGCT 8 cut(s) 94, 148, 206, 351, 401, 653, 819, 927
AluI AGCT 8 cut(s) 94, 148, 206, 351, 401, 653, 819, 927
Alw21I GWGCWC 2 cut(s) 150, 1079
Alw26I GTCTC 3 cut(s) 456, 897, 1277
AlwI GGATC 4 cut(s) 173, 195, 1114, 1290
AoxI GGCC 1 cut(s) 269
ApeKI GCWGC 5 cut(s) 127, 203, 401, 653, 665
ApoI RAATTY 3 cut(s) 173, 553, 1088
AsiGI ACCGGT 1 cut(s) 967
AspLEI GCGC 3 cut(s) 132, 983, 1171
AspS9I GGNCC 1 cut(s) 965
AsuC2I CCSGG 4 cut(s) 63, 211, 278, 292
AsuHPI GGTGA 4 cut(s) 448, 671, 936, 1398
AvaII GGWCC 1 cut(s) 965
BanII GRGCYC 2 cut(s) 150, 580
BbsI GAAGAC 3 cut(s) 1011, 1266, 1395
Bbv12I GWGCWC 2 cut(s) 150, 1079
BbvI GCAGC 5 cut(s) 139, 215, 388, 640, 652
BccI CCATC 3 cut(s) 332, 841, 967
BceAI ACGGC 1 cut(s) 968
BcgI CGANNNNNNTGC 4 cut(s) 422, 456, 1365, 1399
BciT130I CCWGG 1 cut(s) 184
BclI TGATCA 3 cut(s) 631, 1218, 1270
BcnI CCSGG 4 cut(s) 63, 211, 278, 292
BcoDI GTCTC 3 cut(s) 456, 897, 1277
BfaI CTAG 6 cut(s) 161, 641, 816, 915, 924, 950
BfmI CTRYAG 1 cut(s) 1068
BfoI RGCGCY 1 cut(s) 133
BisI GCNGC 6 cut(s) 128, 204, 402, 654, 666, 1129
BlsI GCNGC 6 cut(s) 129, 205, 403, 655, 667, 1130
BmcAI AGTACT 1 cut(s) 878
Bme1390I CCNGG 5 cut(s) 63, 184, 211, 278, 292
Bme18I GGWCC 1 cut(s) 965
BmgBI CACGTC 1 cut(s) 1395
BmgT120I GGNCC 1 cut(s) 965
BmiI GGNNCC 3 cut(s) 289, 313, 646
BmrFI CCNGG 5 cut(s) 63, 184, 211, 278, 292
BmsI GCATC 6 cut(s) 45, 420, 1014, 1062, 1363, 1427
BpiI GAAGAC 3 cut(s) 1011, 1266, 1395
BpmI CTGGAG 1 cut(s) 306
BpuEI CTTGAG 1 cut(s) 95
BpuMI CCSGG 4 cut(s) 63, 211, 278, 292
BsaBI GATNNNNATC 1 cut(s) 484
BsaJI CCNNGG 7 cut(s) 62, 182, 183, 210, 239, 306, 984
BsaWI WCCGGW 1 cut(s) 967
BsaXI ACNNNNNCTCC 4 cut(s) 206, 236, 803, 833
Bsc4I CCNNNNNNNGG 2 cut(s) 297, 1305
Bse118I RCCGGY 1 cut(s) 967
Bse1I ACTGG 3 cut(s) 289, 428, 1108
Bse3DI GCAATG 2 cut(s) 1145, 1198
Bse8I GATNNNNATC 1 cut(s) 484
BseBI CCWGG 1 cut(s) 184
BseDI CCNNGG 7 cut(s) 62, 182, 183, 210, 239, 306, 984
BseGI GGATG 8 cut(s) 10, 52, 76, 332, 432, 776, 994, 1136
BseJI GATNNNNATC 1 cut(s) 484
BseLI CCNNNNNNNGG 2 cut(s) 297, 1305
BseMI GCAATG 2 cut(s) 1145, 1198
BseNI ACTGG 3 cut(s) 289, 428, 1108
BseRI GAGGAG 5 cut(s) 48, 104, 1371, 1380, 1383
BseXI GCAGC 5 cut(s) 139, 215, 388, 640, 652
BsgI GTGCAG 1 cut(s) 639
Bsh1236I CGCG 1 cut(s) 1169
Bsh1285I CGRYCG 1 cut(s) 319
BshFI GGCC 1 cut(s) 271
BshTI ACCGGT 1 cut(s) 967
BsiEI CGRYCG 1 cut(s) 319
BsiHKAI GWGCWC 2 cut(s) 150, 1079
BsiSI CCGG 5 cut(s) 62, 210, 277, 291, 968
BslFI GGGAC 2 cut(s) 257, 781
BslI CCNNNNNNNGG 2 cut(s) 297, 1305
BsmAI GTCTC 3 cut(s) 456, 897, 1277
BsmBI CGTCTC 2 cut(s) 456, 1277
BsmFI GGGAC 2 cut(s) 257, 781
BsmI GAATGC 1 cut(s) 711
BsnI GGCC 1 cut(s) 271
Bsp1286I GDGCHC 3 cut(s) 150, 580, 1079
Bsp143I GATC 9 cut(s) 178, 187, 479, 631, 1106, 1114, 1218, 1270, 1295
BspACI CCGC 1 cut(s) 1128
BspANI GGCC 1 cut(s) 271
BspFNI CGCG 1 cut(s) 1169
BspHI TCATGA 2 cut(s) 1159, 1198
BspLI GGNNCC 3 cut(s) 289, 313, 646
BspMAI CTGCAG 1 cut(s) 1072
BspPI GGATC 4 cut(s) 173, 195, 1114, 1290
BsrDI GCAATG 2 cut(s) 1145, 1198
BsrFI RCCGGY 1 cut(s) 967
BsrI ACTGG 3 cut(s) 289, 428, 1108
BssAI RCCGGY 1 cut(s) 967
BssECI CCNNGG 7 cut(s) 62, 182, 183, 210, 239, 306, 984
BssMI GATC 9 cut(s) 178, 187, 479, 631, 1106, 1114, 1218, 1270, 1295
BssT1I CCWWGG 1 cut(s) 239
Bst2UI CCWGG 1 cut(s) 184
Bst4CI ACNGT 3 cut(s) 450, 662, 1207
BstAPI GCANNNNNTGC 1 cut(s) 662
BstDSI CCRYGG 2 cut(s) 306, 984
BstF5I GGATG 8 cut(s) 10, 52, 76, 332, 432, 776, 994, 1136
BstFNI CGCG 1 cut(s) 1169
BstH2I RGCGCY 1 cut(s) 133
BstHHI GCGC 3 cut(s) 132, 983, 1171
BstKTI GATC 9 cut(s) 181, 190, 482, 634, 1109, 1117, 1221, 1273, 1298
BstMAI GTCTC 3 cut(s) 456, 897, 1277
BstMBI GATC 9 cut(s) 178, 187, 479, 631, 1106, 1114, 1218, 1270, 1295
BstMCI CGRYCG 1 cut(s) 319
BstMWI GCNNNNNNNGC 5 cut(s) 154, 357, 662, 924, 980
BstNI CCWGG 1 cut(s) 184
BstNSI RCATGY 1 cut(s) 348
BstSCI CCNGG 5 cut(s) 61, 182, 209, 276, 290
BstSFI CTRYAG 1 cut(s) 1068
BstUI CGCG 1 cut(s) 1169
BstV1I GCAGC 5 cut(s) 139, 215, 388, 640, 652
BstV2I GAAGAC 3 cut(s) 1011, 1266, 1395
BstX2I RGATCY 2 cut(s) 187, 1295
BstYI RGATCY 2 cut(s) 187, 1295
BsuRI GGCC 1 cut(s) 271
BtgI CCRYGG 2 cut(s) 306, 984
BtrI CACGTC 1 cut(s) 1395
BtsCI GGATG 8 cut(s) 10, 52, 76, 332, 432, 776, 994, 1136
BtsIMutI CAGTG 3 cut(s) 667, 1101, 1203
CciI TCATGA 2 cut(s) 1159, 1198
CfoI GCGC 3 cut(s) 132, 983, 1171
Cfr10I RCCGGY 1 cut(s) 967
Cfr13I GGNCC 1 cut(s) 965
CseI GACGC 1 cut(s) 1271
Csp6I GTAC 2 cut(s) 877, 1095
CspAI ACCGGT 1 cut(s) 967
CviQI GTAC 2 cut(s) 877, 1095
DpnI GATC 9 cut(s) 180, 189, 481, 633, 1108, 1116, 1220, 1272, 1297
DpnII GATC 9 cut(s) 178, 187, 479, 631, 1106, 1114, 1218, 1270, 1295
DraIII CACNNNGTG 1 cut(s) 662
DrdI GACNNNNNNGTC 1 cut(s) 1399
DseDI GACNNNNNNGTC 1 cut(s) 1399
Ecl136II GAGCTC 1 cut(s) 148
Eco130I CCWWGG 1 cut(s) 239
Eco24I GRGCYC 2 cut(s) 150, 580
Eco47I GGWCC 1 cut(s) 965
Eco53kI GAGCTC 1 cut(s) 148
EcoICRI GAGCTC 1 cut(s) 148
EcoRII CCWGG 1 cut(s) 182
EcoT14I CCWWGG 1 cut(s) 239
EcoT22I ATGCAT 2 cut(s) 435, 1378
EcoT38I GRGCYC 2 cut(s) 150, 580
ErhI CCWWGG 1 cut(s) 239
Esp3I CGTCTC 2 cut(s) 456, 1277
FalI AAGNNNNNCTT 2 cut(s) 42, 74
FaqI GGGAC 2 cut(s) 257, 781
FauNDI CATATG 2 cut(s) 625, 636
FbaI TGATCA 3 cut(s) 631, 1218, 1270
Fnu4HI GCNGC 6 cut(s) 128, 204, 402, 654, 666, 1129
FokI GGATG 8 cut(s) 17, 59, 63, 319, 439, 763, 1001, 1123
FriOI GRGCYC 2 cut(s) 150, 580
Fsp4HI GCNGC 6 cut(s) 128, 204, 402, 654, 666, 1129
FspBI CTAG 6 cut(s) 161, 641, 816, 915, 924, 950
GlaI GCGC 3 cut(s) 131, 982, 1170
GluI GCNGC 6 cut(s) 128, 204, 402, 654, 666, 1129
GsuI CTGGAG 1 cut(s) 306
HaeII RGCGCY 1 cut(s) 133
HaeIII GGCC 1 cut(s) 271
HapII CCGG 5 cut(s) 62, 210, 277, 291, 968
HgaI GACGC 1 cut(s) 1271
HhaI GCGC 3 cut(s) 132, 983, 1171
Hin6I GCGC 3 cut(s) 130, 981, 1169
HinP1I GCGC 3 cut(s) 130, 981, 1169
HinfI GANTC 4 cut(s) 121, 461, 518, 1400
HpaII CCGG 5 cut(s) 62, 210, 277, 291, 968
HphI GGTGA 4 cut(s) 448, 671, 936, 1398
Hpy166II GTNNAC 3 cut(s) 1243, 1334, 1428
Hpy188I TCNGA 2 cut(s) 337, 700
Hpy188III TCNNGA 8 cut(s) 112, 298, 544, 950, 963, 1160, 1199, 1222
Hpy8I GTNNAC 3 cut(s) 1243, 1334, 1428
HpyAV CCTTC 2 cut(s) 211, 332
HpyCH4III ACNGT 3 cut(s) 450, 662, 1207
HpyCH4IV ACGT 1 cut(s) 1394
HpyCH4V TGCA 9 cut(s) 344, 360, 433, 512, 534, 656, 855, 1070, 1376
HpyF10VI GCNNNNNNNGC 5 cut(s) 154, 357, 662, 924, 980
HpySE526I ACGT 1 cut(s) 1394
HspAI GCGC 3 cut(s) 130, 981, 1169
Ksp22I TGATCA 3 cut(s) 631, 1218, 1270
Kzo9I GATC 9 cut(s) 178, 187, 479, 631, 1106, 1114, 1218, 1270, 1295
LmnI GCTCC 5 cut(s) 91, 287, 356, 650, 824
Lsp1109I GCAGC 5 cut(s) 139, 215, 388, 640, 652
LweI GCATC 6 cut(s) 45, 420, 1014, 1062, 1363, 1427
MaeI CTAG 6 cut(s) 161, 641, 816, 915, 924, 950
MaeII ACGT 1 cut(s) 1394
MaeIII GTNAC 1 cut(s) 280
MalI GATC 9 cut(s) 180, 189, 481, 633, 1108, 1116, 1220, 1272, 1297
MboI GATC 9 cut(s) 178, 187, 479, 631, 1106, 1114, 1218, 1270, 1295
MboII GAAGA 6 cut(s) 130, 182, 382, 1011, 1271, 1395
MflI RGATCY 2 cut(s) 187, 1295
MhlI GDGCHC 3 cut(s) 150, 580, 1079
MluCI AATT 6 cut(s) 173, 553, 727, 892, 1081, 1088
MlyI GAGTC 3 cut(s) 455, 512, 1409
MmeI TCCRAC 1 cut(s) 104
Mph1103I ATGCAT 2 cut(s) 435, 1378
MslI CAYNNNNRTG 2 cut(s) 684, 1158
MspI CCGG 5 cut(s) 62, 210, 277, 291, 968
MspR9I CCNGG 5 cut(s) 63, 184, 211, 278, 292
Mva1269I GAATGC 1 cut(s) 711
MvaI CCWGG 1 cut(s) 184
MvnI CGCG 1 cut(s) 1169
MwoI GCNNNNNNNGC 5 cut(s) 154, 357, 662, 924, 980
NciI CCSGG 4 cut(s) 63, 211, 278, 292
NdeI CATATG 2 cut(s) 625, 636
NdeII GATC 9 cut(s) 178, 187, 479, 631, 1106, 1114, 1218, 1270, 1295
NlaIV GGNNCC 3 cut(s) 289, 313, 646
NsiI ATGCAT 2 cut(s) 435, 1378
NspI RCATGY 1 cut(s) 348
PagI TCATGA 2 cut(s) 1159, 1198
PasI CCCWGGG 1 cut(s) 183
PcsI WCGNNNNNNNCGW 1 cut(s) 1391
PctI GAATGC 1 cut(s) 711
PfeI GAWTC 1 cut(s) 121
PinAI ACCGGT 1 cut(s) 967
PkrI GCNGC 6 cut(s) 129, 205, 403, 655, 667, 1130
PleI GAGTC 3 cut(s) 455, 512, 1408
PpsI GAGTC 3 cut(s) 455, 512, 1408
PsiI TTATAA 1 cut(s) 1038
Psp124BI GAGCTC 1 cut(s) 150
Psp6I CCWGG 1 cut(s) 182
PspGI CCWGG 1 cut(s) 182
PspN4I GGNNCC 3 cut(s) 289, 313, 646
PspPI GGNCC 1 cut(s) 965
PstI CTGCAG 1 cut(s) 1072
PsuI RGATCY 2 cut(s) 187, 1295
RsaI GTAC 2 cut(s) 878, 1096
RsaNI GTAC 2 cut(s) 877, 1095
RseI CAYNNNNRTG 2 cut(s) 684, 1158
SacI GAGCTC 1 cut(s) 150
SatI GCNGC 6 cut(s) 128, 204, 402, 654, 666, 1129
Sau3AI GATC 9 cut(s) 178, 187, 479, 631, 1106, 1114, 1218, 1270, 1295
Sau96I GGNCC 1 cut(s) 965
ScaI AGTACT 1 cut(s) 878
SchI GAGTC 3 cut(s) 455, 512, 1409
ScrFI CCNGG 5 cut(s) 63, 184, 211, 278, 292
SduI GDGCHC 3 cut(s) 150, 580, 1079
SfaNI GCATC 6 cut(s) 45, 420, 1014, 1062, 1363, 1427
SfcI CTRYAG 1 cut(s) 1068
SinI GGWCC 1 cut(s) 965
SmiMI CAYNNNNRTG 2 cut(s) 684, 1158
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse9I AATT 6 cut(s) 173, 553, 727, 892, 1081, 1088
SsiI CCGC 1 cut(s) 1128
SspI AATATT 2 cut(s) 25, 1303
SspMI CTAG 6 cut(s) 161, 641, 816, 915, 924, 950
SstI GAGCTC 1 cut(s) 150
StyD4I CCNGG 5 cut(s) 61, 182, 209, 276, 290
StyI CCWWGG 1 cut(s) 239
TaaI ACNGT 3 cut(s) 450, 662, 1207
TaiI ACGT 1 cut(s) 1397
TaqI TCGA 3 cut(s) 1022, 1247, 1385
TaqII GACCGA 1 cut(s) 333
TasI AATT 6 cut(s) 173, 553, 727, 892, 1081, 1088
TatI WGTACW 1 cut(s) 876
TauI GCSGC 1 cut(s) 1131
TfiI GAWTC 1 cut(s) 121
TscAI CASTG 3 cut(s) 667, 1108, 1210
TseI GCWGC 5 cut(s) 127, 203, 401, 653, 665
TspDTI ATGAA 6 cut(s) 35, 63, 65, 481, 848, 927
TspRI CASTG 3 cut(s) 667, 1108, 1210
VpaK11BI GGWCC 1 cut(s) 965
XapI RAATTY 3 cut(s) 173, 553, 1088
XbaI TCTAGA 1 cut(s) 949
XceI RCATGY 1 cut(s) 348
XspI CTAG 6 cut(s) 161, 641, 816, 915, 924, 950
ZrmI AGTACT 1 cut(s) 878
Zsp2I ATGCAT 2 cut(s) 435, 1378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.