Rw4G031910

No apical meristem (NAM) protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0016837
Physical Location & Seq
Reverse (-)
59094766 .. 59096557
1792 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G031910.1

Sequence Viewer

Length: 1383 bp
ATGGATCAGGAAAGAAGTAGTAGCTGTGATATGAGTGCAGCAGATCAAGACAAAATTGATGAAGTGATGCTGCCAGGGTTTCGTTTTCACCCAACAGATGAGGAGCTTGTTGGGTTTTATCTCAAAAGGAAGATCCAGCAACGCCCTCTCTCGATCGAGCTCATCAAGCAACTCGACATCTATAAATTCGATCCATGGGATCTTCCAAAGTTAGCAGCTAGTGGGGAGAAGGAGTGGTATTTCTACTGCCCGAGGGACAGAAAATACAGAAACAGCACGAGGCCTAACCGGGTCACCGGAGCTGGGTTCTGGAAAGCCACGGGTACCGACCGGCCCATTTACTCGTCGGAAGGTAACTCCAACAAGTGTATTGGGTTGAAGAAGTCCCTTGTTTTTTACAAAGGTAGAGCTGCCAAAGGGGTCAAAACCGACTGGATGATGCATGAGTTTCGCTTACCTTCTCTCACCGACTCCTCAGTACTCCCACCAAAGAGATCGTTCATGGACAAAATTGCCATTCCCGCAAATGACTCATGGGCAATATGCAGGATATTCAAGAAAACAAATTCTAGTGCCCATCAAAGAGCCATTTCTCATCATTCTTGGGTGTCTCAGACCTTGCCTGAACCAAACACATTTCAAGATCATGTGTTAGGCAGCTCCAGATTAGGTGCACAAACCACTAGCACTGCTCAGTACAGTGGTAACAATATTGACACACAACAAATCTCAACTTCCACCTCAACCGGTACTCTTTCCCCAGGAGATTATTATGCTAATAATTCCTACAAGACCTTACACCCATCAATCGCTTGCAATCTTAAACCCTATCATCAGTACTACCCCATTTCCAACGCCGGAGAGTACTTTAACCCTAATTTCACATTTTCACCTCTGGAGAGTCCGGCAGCCAAATGTTCCGTGGATGTTTCGTCCTTGTTGTTAAACATGTCGTCATCGGTCCTTGGAGATTTCGGAACCAAGCTGGCCTCGGCTGAGAGTAGTACTACTTTCGACTTTAGCAGTACTACTGGTTCTCAGGAGCAACAGTGTAATAATGGCTTCTCCTCCTTGACGACATTACCACACCATGACGTGATGCAAGGGAACCAGCTTGGCGTTGTTGGGAGTCATGATCACAGCATCGATGCGTTGATGAAGAATATAACGAATCATGTGAACTCAAACGCGATAGAAACAGATGATCATGGACACTGGGAGAGTAGTCTCACTAGTCTGCGATCATCGATTGGATTTCCTTTCATGAATAGTTTACCAGTAATACCTTTGAATATAGGAGGTGGGGATGCATGGAAGTCCAACTTGACGTGGGACTCTTCACCATGTCCGAGTGAAATGTCCACTACCAGATGCTATTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

460

Amino Acids

51.12

Weight (kDa)

6.73

Isoelectric Point (pI)

48.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 25 - 152 7e-48 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016837)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g31420
malus_domestica MD13G1072500.v1.1 MD16G1073300.v1.1
prunus_persica Prupe.1G274300_v2.0.a1
pyrus_communis pycom13g06500
rosa_chinensis RchiOBHm_Chr4g0439901
rosa_laevigata RLG00000006228
rosa_multiflora Rmu_sc0000497.1_g000002
rosa_roxburghii Rroxscaffold_5G00380850
rosa_rugosa Rorug04G0322200
rosa_samantha Rh4AG373200 Rh4CG400000 Rh4DG379800
rosa_wichuraiana Rw4G031910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 323
AccB1I GGYRCC 1 cut(s) 323
AccII CGCG 1 cut(s) 1190
AciI CCGC 1 cut(s) 522
AclWI GGATC 4 cut(s) 12, 127, 185, 207
AcsI RAATTY 2 cut(s) 185, 565
AfaI GTAC 8 cut(s) 325, 480, 698, 751, 839, 866, 1006, 1027
AfiI CCNNNNNNNGG 1 cut(s) 303
AflIII ACRYGT 1 cut(s) 948
AgeI ACCGGT 1 cut(s) 746
AgsI TTSAA 4 cut(s) 379, 556, 641, 1291
AhlI ACTAGT 1 cut(s) 1232
AjiI CACGTC 2 cut(s) 1096, 1329
AjnI CCWGG 2 cut(s) 73, 760
AluBI AGCT 9 cut(s) 24, 106, 160, 218, 302, 410, 660, 985, 1114
AluI AGCT 9 cut(s) 24, 106, 160, 218, 302, 410, 660, 985, 1114
Alw21I GWGCWC 2 cut(s) 162, 676
Alw26I GTCTC 2 cut(s) 615, 1232
Alw44I GTGCAC 1 cut(s) 672
AlwI GGATC 4 cut(s) 12, 127, 185, 207
Ama87I CYCGRG 1 cut(s) 250
AoxI GGCC 3 cut(s) 281, 332, 987
ApaLI GTGCAC 1 cut(s) 672
ApeKI GCWGC 6 cut(s) 38, 70, 215, 410, 657, 908
ApoI RAATTY 2 cut(s) 185, 565
AsiGI ACCGGT 1 cut(s) 746
Asp718I GGTACC 1 cut(s) 323
AspS9I GGNCC 2 cut(s) 333, 961
AsuC2I CCSGG 1 cut(s) 290
AsuHPI GGTGA 5 cut(s) 80, 286, 457, 882, 1332
AvaI CYCGRG 1 cut(s) 250
AvaII GGWCC 1 cut(s) 961
BaeGI GKGCMC 2 cut(s) 577, 676
BanI GGYRCC 1 cut(s) 323
BanII GRGCYC 1 cut(s) 162
BauI CACGAG 1 cut(s) 277
Bbv12I GWGCWC 2 cut(s) 162, 676
BbvI GCAGC 6 cut(s) 50, 57, 227, 397, 669, 920
BccI CCATC 2 cut(s) 585, 811
BcgI CGANNNNNNTGC 2 cut(s) 431, 465
BciT130I CCWGG 2 cut(s) 75, 762
BclI TGATCA 2 cut(s) 1135, 1204
BcnI CCSGG 1 cut(s) 290
BcoDI GTCTC 2 cut(s) 615, 1232
BcuI ACTAGT 1 cut(s) 1232
BfaI CTAG 4 cut(s) 219, 570, 684, 1233
BisI GCNGC 6 cut(s) 39, 71, 216, 411, 658, 909
BlsI GCNGC 6 cut(s) 40, 72, 217, 412, 659, 910
BmcAI AGTACT 5 cut(s) 480, 839, 866, 1006, 1027
Bme1390I CCNGG 3 cut(s) 75, 290, 762
Bme18I GGWCC 1 cut(s) 961
BmeT110I CYCGRG 1 cut(s) 250
BmgBI CACGTC 2 cut(s) 1096, 1329
BmgT120I GGNCC 2 cut(s) 333, 961
BmiI GGNNCC 3 cut(s) 325, 979, 1109
BmrFI CCNGG 3 cut(s) 75, 290, 762
BmrI ACTGGG 1 cut(s) 1225
BmsI GCATC 7 cut(s) 57, 429, 1089, 1138, 1152, 1297, 1361
BmuI ACTGGG 1 cut(s) 1225
BpmI CTGGAG 2 cut(s) 646, 917
BpuMI CCSGG 1 cut(s) 290
Bsa29I ATCGAT 2 cut(s) 1146, 1247
BsaJI CCNNGG 8 cut(s) 74, 194, 251, 318, 760, 921, 964, 990
BsaWI WCCGGW 2 cut(s) 296, 746
BsaXI ACNNNNNCTCC 4 cut(s) 218, 248, 1034, 1064
Bsc4I CCNNNNNNNGG 1 cut(s) 303
Bse118I RCCGGY 2 cut(s) 330, 746
Bse1I ACTGG 4 cut(s) 437, 1036, 1220, 1277
BseBI CCWGG 2 cut(s) 75, 762
BseCI ATCGAT 2 cut(s) 1146, 1247
BseDI CCNNGG 8 cut(s) 74, 194, 251, 318, 760, 921, 964, 990
BseGI GGATG 3 cut(s) 441, 931, 1312
BseLI CCNNNNNNNGG 1 cut(s) 303
BseMII CTCAG 5 cut(s) 489, 626, 707, 987, 1052
BseNI ACTGG 4 cut(s) 437, 1036, 1220, 1277
BseRI GAGGAG 3 cut(s) 116, 463, 1057
BseSI GKGCMC 2 cut(s) 577, 676
BseXI GCAGC 6 cut(s) 50, 57, 227, 397, 669, 920
BseYI CCCAGC 1 cut(s) 302
BsgI GTGCAG 1 cut(s) 57
Bsh1236I CGCG 1 cut(s) 1190
Bsh1285I CGRYCG 2 cut(s) 156, 331
BshFI GGCC 3 cut(s) 283, 334, 989
BshNI GGYRCC 1 cut(s) 323
BshTI ACCGGT 1 cut(s) 746
BshVI ATCGAT 2 cut(s) 1146, 1247
BsiEI CGRYCG 2 cut(s) 156, 331
BsiHKAI GWGCWC 2 cut(s) 162, 676
BsiHKCI CYCGRG 1 cut(s) 250
BsiSI CCGG 6 cut(s) 289, 297, 331, 747, 858, 905
BslFI GGGAC 3 cut(s) 269, 370, 1346
BslI CCNNNNNNNGG 1 cut(s) 303
BsmAI GTCTC 2 cut(s) 615, 1232
BsmFI GGGAC 3 cut(s) 269, 370, 1346
BsnI GGCC 3 cut(s) 283, 334, 989
BsoBI CYCGRG 1 cut(s) 250
Bsp1286I GDGCHC 3 cut(s) 162, 577, 676
Bsp19I CCATGG 1 cut(s) 194
BspACI CCGC 1 cut(s) 522
BspANI GGCC 3 cut(s) 283, 334, 989
BspCNI CTCAG 5 cut(s) 488, 625, 706, 988, 1051
BspDI ATCGAT 2 cut(s) 1146, 1247
BspFNI CGCG 1 cut(s) 1190
BspHI TCATGA 2 cut(s) 1132, 1263
BspLI GGNNCC 3 cut(s) 325, 979, 1109
BspPI GGATC 4 cut(s) 12, 127, 185, 207
BspT107I GGYRCC 1 cut(s) 323
BsrFI RCCGGY 2 cut(s) 330, 746
BsrI ACTGG 4 cut(s) 437, 1036, 1220, 1277
BssAI RCCGGY 2 cut(s) 330, 746
BssECI CCNNGG 8 cut(s) 74, 194, 251, 318, 760, 921, 964, 990
BssSI CACGAG 1 cut(s) 277
BssT1I CCWWGG 2 cut(s) 194, 964
Bst2BI CACGAG 1 cut(s) 277
Bst2UI CCWGG 2 cut(s) 75, 762
Bst4CI ACNGT 2 cut(s) 701, 1050
Bst6I CTCTTC 1 cut(s) 1342
BstC8I GCNNGC 2 cut(s) 814, 987
BstDEI CTNAG 6 cut(s) 475, 612, 693, 996, 1038, 1380
BstDSI CCRYGG 3 cut(s) 194, 318, 921
BstEII GGTNACC 1 cut(s) 292
BstF5I GGATG 3 cut(s) 441, 931, 1312
BstFNI CGCG 1 cut(s) 1190
BstMAI GTCTC 2 cut(s) 615, 1232
BstMCI CGRYCG 2 cut(s) 156, 331
BstMWI GCNNNNNNNGC 2 cut(s) 166, 521
BstNI CCWGG 2 cut(s) 75, 762
BstNSI RCATGY 1 cut(s) 952
BstPI GGTNACC 1 cut(s) 292
BstSCI CCNGG 3 cut(s) 73, 288, 760
BstSLI GKGCMC 2 cut(s) 577, 676
BstUI CGCG 1 cut(s) 1190
BstV1I GCAGC 6 cut(s) 50, 57, 227, 397, 669, 920
BstX2I RGATCY 2 cut(s) 132, 199
BstYI RGATCY 2 cut(s) 132, 199
Bsu15I ATCGAT 2 cut(s) 1146, 1247
BsuRI GGCC 3 cut(s) 283, 334, 989
BsuTUI ATCGAT 2 cut(s) 1146, 1247
BtgI CCRYGG 3 cut(s) 194, 318, 921
BtrI CACGTC 2 cut(s) 1096, 1329
BtsCI GGATG 3 cut(s) 441, 931, 1312
BtsI GCAGTG 1 cut(s) 687
BtsIMutI CAGTG 4 cut(s) 687, 706, 1055, 1213
Cac8I GCNNGC 2 cut(s) 814, 987
CciI TCATGA 2 cut(s) 1132, 1263
Cfr10I RCCGGY 2 cut(s) 330, 746
Cfr13I GGNCC 2 cut(s) 333, 961
ClaI ATCGAT 2 cut(s) 1146, 1247
Csp6I GTAC 8 cut(s) 324, 479, 697, 750, 838, 865, 1005, 1026
CspAI ACCGGT 1 cut(s) 746
CviQI GTAC 8 cut(s) 324, 479, 697, 750, 838, 865, 1005, 1026
DdeI CTNAG 6 cut(s) 475, 612, 693, 996, 1038, 1380
Eam1104I CTCTTC 1 cut(s) 1342
EarI CTCTTC 1 cut(s) 1342
Ecl136II GAGCTC 1 cut(s) 160
Eco130I CCWWGG 2 cut(s) 194, 964
Eco147I AGGCCT 1 cut(s) 283
Eco24I GRGCYC 1 cut(s) 162
Eco47I GGWCC 1 cut(s) 961
Eco53kI GAGCTC 1 cut(s) 160
Eco88I CYCGRG 1 cut(s) 250
Eco91I GGTNACC 1 cut(s) 292
EcoICRI GAGCTC 1 cut(s) 160
EcoO65I GGTNACC 1 cut(s) 292
EcoRII CCWGG 2 cut(s) 73, 760
EcoT14I CCWWGG 2 cut(s) 194, 964
EcoT22I ATGCAT 2 cut(s) 444, 1312
EcoT38I GRGCYC 1 cut(s) 162
ErhI CCWWGG 2 cut(s) 194, 964
FalI AAGNNNNNCTT 2 cut(s) 1307, 1339
FaqI GGGAC 3 cut(s) 269, 370, 1346
FauI CCCGC 1 cut(s) 529
FbaI TGATCA 2 cut(s) 1135, 1204
Fnu4HI GCNGC 6 cut(s) 39, 71, 216, 411, 658, 909
FokI GGATG 3 cut(s) 448, 938, 1319
FriOI GRGCYC 1 cut(s) 162
Fsp4HI GCNGC 6 cut(s) 39, 71, 216, 411, 658, 909
FspBI CTAG 4 cut(s) 219, 570, 684, 1233
GluI GCNGC 6 cut(s) 39, 71, 216, 411, 658, 909
GsaI CCCAGC 1 cut(s) 306
GsuI CTGGAG 2 cut(s) 646, 917
HaeIII GGCC 3 cut(s) 283, 334, 989
HapII CCGG 6 cut(s) 289, 297, 331, 747, 858, 905
HinfI GANTC 6 cut(s) 470, 530, 901, 1129, 1171, 1334
HpaII CCGG 6 cut(s) 289, 297, 331, 747, 858, 905
HphI GGTGA 5 cut(s) 80, 286, 457, 882, 1332
Hpy166II GTNNAC 4 cut(s) 674, 1180, 1274, 1362
Hpy188I TCNGA 4 cut(s) 349, 615, 977, 1350
Hpy8I GTNNAC 4 cut(s) 674, 1180, 1274, 1362
Hpy99I CGWCG 1 cut(s) 349
HpyAV CCTTC 3 cut(s) 223, 344, 468
HpyCH4III ACNGT 2 cut(s) 701, 1050
HpyCH4IV ACGT 2 cut(s) 1095, 1328
HpyCH4V TGCA 7 cut(s) 38, 442, 546, 674, 816, 1102, 1310
HpyF10VI GCNNNNNNNGC 2 cut(s) 166, 521
HpyF3I CTNAG 6 cut(s) 475, 612, 693, 996, 1038, 1380
HpySE526I ACGT 2 cut(s) 1095, 1328
KpnI GGTACC 1 cut(s) 327
Ksp22I TGATCA 2 cut(s) 1135, 1204
LmnI GCTCC 4 cut(s) 103, 299, 665, 1042
Lsp1109I GCAGC 6 cut(s) 50, 57, 227, 397, 669, 920
LweI GCATC 7 cut(s) 57, 429, 1089, 1138, 1152, 1297, 1361
MaeI CTAG 4 cut(s) 219, 570, 684, 1233
MaeII ACGT 2 cut(s) 1095, 1328
MaeIII GTNAC 3 cut(s) 292, 353, 704
MboII GAAGA 5 cut(s) 142, 194, 391, 1171, 1329
MflI RGATCY 2 cut(s) 132, 199
MhlI GDGCHC 3 cut(s) 162, 577, 676
MluCI AATT 6 cut(s) 54, 185, 510, 565, 781, 877
MlyI GAGTC 5 cut(s) 464, 524, 910, 1138, 1328
MmeI TCCRAC 4 cut(s) 327, 384, 876, 1344
Mph1103I ATGCAT 2 cut(s) 444, 1312
MseI TTAA 3 cut(s) 822, 870, 944
MspI CCGG 6 cut(s) 289, 297, 331, 747, 858, 905
MspR9I CCNGG 3 cut(s) 75, 290, 762
MvaI CCWGG 2 cut(s) 75, 762
MvnI CGCG 1 cut(s) 1190
MwoI GCNNNNNNNGC 2 cut(s) 166, 521
NciI CCSGG 1 cut(s) 290
NcoI CCATGG 1 cut(s) 194
NlaIV GGNNCC 3 cut(s) 325, 979, 1109
NmeAIII GCCGAG 1 cut(s) 971
NmuCI GTSAC 1 cut(s) 292
NsiI ATGCAT 2 cut(s) 444, 1312
NspI RCATGY 1 cut(s) 952
PagI TCATGA 2 cut(s) 1132, 1263
PceI AGGCCT 1 cut(s) 283
PciI ACATGT 1 cut(s) 948
PfeI GAWTC 1 cut(s) 1171
PinAI ACCGGT 1 cut(s) 746
PkrI GCNGC 6 cut(s) 40, 72, 217, 412, 659, 910
Ple19I CGATCG 1 cut(s) 156
PleI GAGTC 5 cut(s) 464, 524, 909, 1137, 1328
PpsI GAGTC 5 cut(s) 464, 524, 909, 1137, 1328
PscI ACATGT 1 cut(s) 948
Psp124BI GAGCTC 1 cut(s) 162
Psp6I CCWGG 2 cut(s) 73, 760
PspEI GGTNACC 1 cut(s) 292
PspFI CCCAGC 1 cut(s) 302
PspGI CCWGG 2 cut(s) 73, 760
PspN4I GGNNCC 3 cut(s) 325, 979, 1109
PspPI GGNCC 2 cut(s) 333, 961
PsrI GAACNNNNNNTAC 2 cut(s) 1018, 1050
PsuI RGATCY 2 cut(s) 132, 199
PvuI CGATCG 1 cut(s) 156
RsaI GTAC 8 cut(s) 325, 480, 698, 751, 839, 866, 1006, 1027
RsaNI GTAC 8 cut(s) 324, 479, 697, 750, 838, 865, 1005, 1026
SacI GAGCTC 1 cut(s) 162
SaqAI TTAA 3 cut(s) 822, 870, 944
SatI GCNGC 6 cut(s) 39, 71, 216, 411, 658, 909
Sau96I GGNCC 2 cut(s) 333, 961
ScaI AGTACT 5 cut(s) 480, 839, 866, 1006, 1027
SchI GAGTC 5 cut(s) 464, 524, 910, 1138, 1328
ScrFI CCNGG 3 cut(s) 75, 290, 762
SduI GDGCHC 3 cut(s) 162, 577, 676
SfaNI GCATC 7 cut(s) 57, 429, 1089, 1138, 1152, 1297, 1361
SinI GGWCC 1 cut(s) 961
SpeI ACTAGT 1 cut(s) 1232
Sse9I AATT 6 cut(s) 54, 185, 510, 565, 781, 877
SseBI AGGCCT 1 cut(s) 283
SsiI CCGC 1 cut(s) 522
SspI AATATT 1 cut(s) 712
SspMI CTAG 4 cut(s) 219, 570, 684, 1233
SstI GAGCTC 1 cut(s) 162
StuI AGGCCT 1 cut(s) 283
StyD4I CCNGG 3 cut(s) 73, 288, 760
StyI CCWWGG 2 cut(s) 194, 964
TaaI ACNGT 2 cut(s) 701, 1050
TaiI ACGT 2 cut(s) 1098, 1331
TaqI TCGA 7 cut(s) 152, 156, 174, 189, 1014, 1146, 1247
TaqII GACCGA 1 cut(s) 949
TasI AATT 6 cut(s) 54, 185, 510, 565, 781, 877
TatI WGTACW 6 cut(s) 478, 696, 837, 864, 1004, 1025
TfiI GAWTC 1 cut(s) 1171
Tru1I TTAA 3 cut(s) 822, 870, 944
Tru9I TTAA 3 cut(s) 822, 870, 944
TscAI CASTG 4 cut(s) 694, 706, 1055, 1220
TseFI GTSAC 1 cut(s) 292
TseI GCWGC 6 cut(s) 38, 70, 215, 410, 657, 908
Tsp45I GTSAC 1 cut(s) 292
TspDTI ATGAA 5 cut(s) 75, 490, 1172, 1252, 1280
TspGWI ACGGA 1 cut(s) 910
TspRI CASTG 4 cut(s) 694, 706, 1055, 1220
VneI GTGCAC 1 cut(s) 672
VpaK11BI GGWCC 1 cut(s) 961
XapI RAATTY 2 cut(s) 185, 565
XceI RCATGY 1 cut(s) 952
XcmI CCANNNNNNNNNTGG 1 cut(s) 919
XspI CTAG 4 cut(s) 219, 570, 684, 1233
ZrmI AGTACT 5 cut(s) 480, 839, 866, 1006, 1027
Zsp2I ATGCAT 2 cut(s) 444, 1312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.