Rroxscaffold_5G00380850

No apical meristem (NAM) protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0016837
Physical Location & Seq
Reverse (-)
60984369 .. 60986155
1787 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00380850.1

Sequence Viewer

Length: 1221 bp
ATGGATCAGGAAAGAAGTAGTAGCTGTGATATGAGTGCAGCAGATCAAGACAAAATTGATGAAGTGATGCTGCCAGGGTTTCGTTTTCACCCAACAGATGAGGAGCTTGTTGGGTTTTATCTCAAGAGGAAGATCCAGCAACGCCCTCTCTCGATCGAGCTCATCAAGCAACTCGACATCTATAAATTCGATCCATGGGATCTTCCAAAGTTGGCAGCTAGTGGGGAGAAGGAGTGGTATTTCTACTGCCCGAGGGACAGAAAATACAGAAACAGCACGAGGCCTAACCGGGTCACCGGAGCCGGGTTCTGGAAAGCCACGGGTAGAGCTGCCAAAGGGGTCAAAACCGACTGGATGATGCATGAGTTTCGCTTACCTTCTCTCACCGACTCCTCAGTACTCCCACCAAAGAGATCGTTCATGGACAAAATTGCCATTCCCGCAAATGACTCATGGGCAATATGCAGGATATTCAAGAAAACAAATTCTAGTGCCCATCAAAGAGCCATTTCTCATCATTCTTGGGTGTCTCAGACCTTGCCTGAACCAAACACAATTCAAGATCATGTATCTCAACTTCCACCTCAACCAGTACTCTTTCCCCAGGGAGATTATTATGCTAATAATTCCTACAAAACCTTACACCCATCAATCGCTTGCAATCTTAAACCCTATCATCAGTACTTCCCCATTTCCAACGCCGGAGAGTACTTTAACCCTAATTTCACGTTTTCACCTCTGGAGAGTCCGGCAGCCAAATGTTCAGTGGATGTTTCGTCCTTGTTGTTAAACATGTCGTCATCGGTCCTTGGAGATTTCGGAACCAAGCTAGCCTCGGCTGAGAGTAGTACTACTTTCGACTTTAGCAGTACTACTGGTTCTCAGGAGCAACAGTACTGTAATAATGGCTTCTCCTCCTTCACGACATTACCACACCATGACGTGATGCAAGGGAACCAGCTTGGCGTTGTTGGGAGTCATGATCACAGCATCGATGAGTTGATGAAGAATATAACGAATCATGTGAACTCAAACGCGATAGAAACAGATGATCATGGACACTGGGAGAGTAGTCTGCGATCATCGATTGGATTTCCTTTCATGAATAGTTTACCAGTAATACCTTTGAAAATAGGAGGTGGGGATGCATGGAAGTCCAACTTGACGTGGGACTCTTCACCATGTCCGAGTGAAATGTCCACTACCAGATGCTATTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

406

Amino Acids

45.67

Weight (kDa)

6.31

Isoelectric Point (pI)

51.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 25 - 110 6e-32 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016837)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g31420
malus_domestica MD13G1072500.v1.1 MD16G1073300.v1.1
prunus_persica Prupe.1G274300_v2.0.a1
pyrus_communis pycom13g06500
rosa_chinensis RchiOBHm_Chr4g0439901
rosa_laevigata RLG00000006228
rosa_multiflora Rmu_sc0000497.1_g000002
rosa_roxburghii Rroxscaffold_5G00380850
rosa_rugosa Rorug04G0322200
rosa_samantha Rh4AG373200 Rh4CG400000 Rh4DG379800
rosa_wichuraiana Rw4G031910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1037
AciI CCGC 1 cut(s) 441
AclWI GGATC 4 cut(s) 12, 127, 185, 207
AcsI RAATTY 2 cut(s) 185, 484
AfaI GTAC 7 cut(s) 399, 594, 683, 710, 850, 871, 896
AfiI CCNNNNNNNGG 2 cut(s) 303, 309
AflIII ACRYGT 1 cut(s) 792
AgsI TTSAA 3 cut(s) 475, 560, 1129
AjiI CACGTC 2 cut(s) 943, 1167
AjnI CCWGG 2 cut(s) 73, 603
AluBI AGCT 7 cut(s) 24, 106, 160, 218, 329, 829, 961
AluI AGCT 7 cut(s) 24, 106, 160, 218, 329, 829, 961
Alw21I GWGCWC 1 cut(s) 162
Alw26I GTCTC 1 cut(s) 534
AlwI GGATC 4 cut(s) 12, 127, 185, 207
Ama87I CYCGRG 1 cut(s) 250
AoxI GGCC 1 cut(s) 281
ApeKI GCWGC 5 cut(s) 38, 70, 215, 329, 752
ApoI RAATTY 2 cut(s) 185, 484
AspS9I GGNCC 1 cut(s) 805
AsuC2I CCSGG 2 cut(s) 290, 304
AsuHPI GGTGA 5 cut(s) 80, 286, 376, 726, 1170
AsuNHI GCTAGC 1 cut(s) 829
AvaI CYCGRG 1 cut(s) 250
AvaII GGWCC 1 cut(s) 805
BaeGI GKGCMC 1 cut(s) 496
BanII GRGCYC 1 cut(s) 162
BarI GAAGNNNNNNTAC 2 cut(s) 561, 593
BauI CACGAG 1 cut(s) 277
Bbv12I GWGCWC 1 cut(s) 162
BbvI GCAGC 5 cut(s) 50, 57, 227, 316, 764
BccI CCATC 2 cut(s) 504, 655
BcgI CGANNNNNNTGC 2 cut(s) 350, 384
BciT130I CCWGG 2 cut(s) 75, 605
BclI TGATCA 2 cut(s) 982, 1051
BcnI CCSGG 2 cut(s) 290, 304
BcoDI GTCTC 1 cut(s) 534
BfaI CTAG 3 cut(s) 219, 489, 830
BisI GCNGC 5 cut(s) 39, 71, 216, 330, 753
BlsI GCNGC 5 cut(s) 40, 72, 217, 331, 754
BmcAI AGTACT 7 cut(s) 399, 594, 683, 710, 850, 871, 896
Bme1390I CCNGG 4 cut(s) 75, 290, 304, 605
Bme18I GGWCC 1 cut(s) 805
BmeT110I CYCGRG 1 cut(s) 250
BmgBI CACGTC 2 cut(s) 943, 1167
BmgT120I GGNCC 1 cut(s) 805
BmiI GGNNCC 3 cut(s) 301, 823, 956
BmrFI CCNGG 4 cut(s) 75, 290, 304, 605
BmrI ACTGGG 1 cut(s) 1072
BmsI GCATC 6 cut(s) 57, 348, 936, 999, 1135, 1199
BmtI GCTAGC 1 cut(s) 833
BmuI ACTGGG 1 cut(s) 1072
BpmI CTGGAG 1 cut(s) 761
BpuEI CTTGAG 1 cut(s) 107
BpuMI CCSGG 2 cut(s) 290, 304
Bsa29I ATCGAT 2 cut(s) 993, 1085
BsaJI CCNNGG 8 cut(s) 74, 194, 251, 318, 603, 604, 808, 834
BsaWI WCCGGW 1 cut(s) 296
BsaXI ACNNNNNCTCC 4 cut(s) 218, 248, 878, 908
Bsc4I CCNNNNNNNGG 2 cut(s) 303, 309
Bse1I ACTGG 5 cut(s) 356, 590, 880, 1067, 1115
BseBI CCWGG 2 cut(s) 75, 605
BseCI ATCGAT 2 cut(s) 993, 1085
BseDI CCNNGG 8 cut(s) 74, 194, 251, 318, 603, 604, 808, 834
BseGI GGATG 3 cut(s) 360, 775, 1150
BseLI CCNNNNNNNGG 2 cut(s) 303, 309
BseMII CTCAG 4 cut(s) 408, 545, 831, 896
BseNI ACTGG 5 cut(s) 356, 590, 880, 1067, 1115
BseRI GAGGAG 3 cut(s) 116, 382, 904
BseSI GKGCMC 1 cut(s) 496
BseXI GCAGC 5 cut(s) 50, 57, 227, 316, 764
BsgI GTGCAG 1 cut(s) 57
Bsh1236I CGCG 1 cut(s) 1037
Bsh1285I CGRYCG 1 cut(s) 156
BshFI GGCC 1 cut(s) 283
BshVI ATCGAT 2 cut(s) 993, 1085
BsiEI CGRYCG 1 cut(s) 156
BsiHKAI GWGCWC 1 cut(s) 162
BsiHKCI CYCGRG 1 cut(s) 250
BsiSI CCGG 5 cut(s) 289, 297, 303, 702, 749
BslFI GGGAC 2 cut(s) 269, 1184
BslI CCNNNNNNNGG 2 cut(s) 303, 309
BsmAI GTCTC 1 cut(s) 534
BsmFI GGGAC 2 cut(s) 269, 1184
BsnI GGCC 1 cut(s) 283
BsoBI CYCGRG 1 cut(s) 250
Bsp1286I GDGCHC 2 cut(s) 162, 496
Bsp19I CCATGG 1 cut(s) 194
BspACI CCGC 1 cut(s) 441
BspANI GGCC 1 cut(s) 283
BspCNI CTCAG 4 cut(s) 407, 544, 832, 895
BspDI ATCGAT 2 cut(s) 993, 1085
BspFNI CGCG 1 cut(s) 1037
BspHI TCATGA 2 cut(s) 979, 1101
BspLI GGNNCC 3 cut(s) 301, 823, 956
BspOI GCTAGC 1 cut(s) 833
BspPI GGATC 4 cut(s) 12, 127, 185, 207
BsrI ACTGG 5 cut(s) 356, 590, 880, 1067, 1115
BssECI CCNNGG 8 cut(s) 74, 194, 251, 318, 603, 604, 808, 834
BssSI CACGAG 1 cut(s) 277
BssT1I CCWWGG 2 cut(s) 194, 808
Bst2BI CACGAG 1 cut(s) 277
Bst2UI CCWGG 2 cut(s) 75, 605
Bst4CI ACNGT 2 cut(s) 894, 899
Bst6I CTCTTC 1 cut(s) 1180
BstC8I GCNNGC 2 cut(s) 658, 831
BstDEI CTNAG 5 cut(s) 394, 531, 840, 882, 1218
BstDSI CCRYGG 2 cut(s) 194, 318
BstEII GGTNACC 1 cut(s) 292
BstF5I GGATG 3 cut(s) 360, 775, 1150
BstFNI CGCG 1 cut(s) 1037
BstMAI GTCTC 1 cut(s) 534
BstMCI CGRYCG 1 cut(s) 156
BstMWI GCNNNNNNNGC 2 cut(s) 166, 440
BstNI CCWGG 2 cut(s) 75, 605
BstNSI RCATGY 1 cut(s) 796
BstPI GGTNACC 1 cut(s) 292
BstSCI CCNGG 4 cut(s) 73, 288, 302, 603
BstSLI GKGCMC 1 cut(s) 496
BstUI CGCG 1 cut(s) 1037
BstV1I GCAGC 5 cut(s) 50, 57, 227, 316, 764
BstX2I RGATCY 2 cut(s) 132, 199
BstYI RGATCY 2 cut(s) 132, 199
Bsu15I ATCGAT 2 cut(s) 993, 1085
BsuRI GGCC 1 cut(s) 283
BsuTUI ATCGAT 2 cut(s) 993, 1085
BtgI CCRYGG 2 cut(s) 194, 318
BtrI CACGTC 2 cut(s) 943, 1167
BtsCI GGATG 3 cut(s) 360, 775, 1150
BtsIMutI CAGTG 2 cut(s) 771, 1060
Cac8I GCNNGC 2 cut(s) 658, 831
CciI TCATGA 2 cut(s) 979, 1101
Cfr13I GGNCC 1 cut(s) 805
ClaI ATCGAT 2 cut(s) 993, 1085
Csp6I GTAC 7 cut(s) 398, 593, 682, 709, 849, 870, 895
CviQI GTAC 7 cut(s) 398, 593, 682, 709, 849, 870, 895
DdeI CTNAG 5 cut(s) 394, 531, 840, 882, 1218
Eam1104I CTCTTC 1 cut(s) 1180
EarI CTCTTC 1 cut(s) 1180
Ecl136II GAGCTC 1 cut(s) 160
Eco130I CCWWGG 2 cut(s) 194, 808
Eco147I AGGCCT 1 cut(s) 283
Eco24I GRGCYC 1 cut(s) 162
Eco47I GGWCC 1 cut(s) 805
Eco53kI GAGCTC 1 cut(s) 160
Eco88I CYCGRG 1 cut(s) 250
Eco91I GGTNACC 1 cut(s) 292
EcoICRI GAGCTC 1 cut(s) 160
EcoO65I GGTNACC 1 cut(s) 292
EcoRII CCWGG 2 cut(s) 73, 603
EcoT14I CCWWGG 2 cut(s) 194, 808
EcoT22I ATGCAT 2 cut(s) 363, 1150
EcoT38I GRGCYC 1 cut(s) 162
ErhI CCWWGG 2 cut(s) 194, 808
FalI AAGNNNNNCTT 2 cut(s) 1145, 1177
FaqI GGGAC 2 cut(s) 269, 1184
FauI CCCGC 1 cut(s) 448
FbaI TGATCA 2 cut(s) 982, 1051
Fnu4HI GCNGC 5 cut(s) 39, 71, 216, 330, 753
FokI GGATG 3 cut(s) 367, 782, 1157
FriOI GRGCYC 1 cut(s) 162
Fsp4HI GCNGC 5 cut(s) 39, 71, 216, 330, 753
FspBI CTAG 3 cut(s) 219, 489, 830
GluI GCNGC 5 cut(s) 39, 71, 216, 330, 753
GsuI CTGGAG 1 cut(s) 761
HaeIII GGCC 1 cut(s) 283
HapII CCGG 5 cut(s) 289, 297, 303, 702, 749
HinfI GANTC 6 cut(s) 389, 449, 745, 976, 1018, 1172
HpaII CCGG 5 cut(s) 289, 297, 303, 702, 749
HphI GGTGA 5 cut(s) 80, 286, 376, 726, 1170
Hpy166II GTNNAC 3 cut(s) 1027, 1112, 1200
Hpy188I TCNGA 3 cut(s) 534, 821, 1188
Hpy8I GTNNAC 3 cut(s) 1027, 1112, 1200
HpyAV CCTTC 3 cut(s) 223, 387, 928
HpyCH4III ACNGT 2 cut(s) 894, 899
HpyCH4IV ACGT 3 cut(s) 728, 942, 1166
HpyCH4V TGCA 6 cut(s) 38, 361, 465, 660, 949, 1148
HpyF10VI GCNNNNNNNGC 2 cut(s) 166, 440
HpyF3I CTNAG 5 cut(s) 394, 531, 840, 882, 1218
HpySE526I ACGT 3 cut(s) 728, 942, 1166
Ksp22I TGATCA 2 cut(s) 982, 1051
LmnI GCTCC 3 cut(s) 103, 299, 886
Lsp1109I GCAGC 5 cut(s) 50, 57, 227, 316, 764
LweI GCATC 6 cut(s) 57, 348, 936, 999, 1135, 1199
MaeI CTAG 3 cut(s) 219, 489, 830
MaeII ACGT 3 cut(s) 728, 942, 1166
MaeIII GTNAC 1 cut(s) 292
MboII GAAGA 4 cut(s) 142, 194, 1018, 1167
MflI RGATCY 2 cut(s) 132, 199
MhlI GDGCHC 2 cut(s) 162, 496
MluCI AATT 7 cut(s) 54, 185, 429, 484, 555, 625, 721
MlyI GAGTC 5 cut(s) 383, 443, 754, 985, 1166
MmeI TCCRAC 2 cut(s) 720, 1182
Mph1103I ATGCAT 2 cut(s) 363, 1150
MseI TTAA 3 cut(s) 666, 714, 788
MspI CCGG 5 cut(s) 289, 297, 303, 702, 749
MspR9I CCNGG 4 cut(s) 75, 290, 304, 605
MvaI CCWGG 2 cut(s) 75, 605
MvnI CGCG 1 cut(s) 1037
MwoI GCNNNNNNNGC 2 cut(s) 166, 440
NciI CCSGG 2 cut(s) 290, 304
NcoI CCATGG 1 cut(s) 194
NheI GCTAGC 1 cut(s) 829
NlaIV GGNNCC 3 cut(s) 301, 823, 956
NmeAIII GCCGAG 1 cut(s) 815
NmuCI GTSAC 1 cut(s) 292
NsiI ATGCAT 2 cut(s) 363, 1150
NspI RCATGY 1 cut(s) 796
PagI TCATGA 2 cut(s) 979, 1101
PasI CCCWGGG 1 cut(s) 604
PceI AGGCCT 1 cut(s) 283
PciI ACATGT 1 cut(s) 792
PfeI GAWTC 1 cut(s) 1018
PkrI GCNGC 5 cut(s) 40, 72, 217, 331, 754
Ple19I CGATCG 1 cut(s) 156
PleI GAGTC 5 cut(s) 383, 443, 753, 984, 1166
PpsI GAGTC 5 cut(s) 383, 443, 753, 984, 1166
PscI ACATGT 1 cut(s) 792
Psp124BI GAGCTC 1 cut(s) 162
Psp6I CCWGG 2 cut(s) 73, 603
PspEI GGTNACC 1 cut(s) 292
PspGI CCWGG 2 cut(s) 73, 603
PspN4I GGNNCC 3 cut(s) 301, 823, 956
PspPI GGNCC 1 cut(s) 805
PsrI GAACNNNNNNTAC 2 cut(s) 862, 894
PsuI RGATCY 2 cut(s) 132, 199
PvuI CGATCG 1 cut(s) 156
RsaI GTAC 7 cut(s) 399, 594, 683, 710, 850, 871, 896
RsaNI GTAC 7 cut(s) 398, 593, 682, 709, 849, 870, 895
SacI GAGCTC 1 cut(s) 162
SaqAI TTAA 3 cut(s) 666, 714, 788
SatI GCNGC 5 cut(s) 39, 71, 216, 330, 753
Sau96I GGNCC 1 cut(s) 805
ScaI AGTACT 7 cut(s) 399, 594, 683, 710, 850, 871, 896
SchI GAGTC 5 cut(s) 383, 443, 754, 985, 1166
ScrFI CCNGG 4 cut(s) 75, 290, 304, 605
SduI GDGCHC 2 cut(s) 162, 496
SfaNI GCATC 6 cut(s) 57, 348, 936, 999, 1135, 1199
SinI GGWCC 1 cut(s) 805
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
Sse9I AATT 7 cut(s) 54, 185, 429, 484, 555, 625, 721
SseBI AGGCCT 1 cut(s) 283
SsiI CCGC 1 cut(s) 441
SspMI CTAG 3 cut(s) 219, 489, 830
SstI GAGCTC 1 cut(s) 162
StuI AGGCCT 1 cut(s) 283
StyD4I CCNGG 4 cut(s) 73, 288, 302, 603
StyI CCWWGG 2 cut(s) 194, 808
TaaI ACNGT 2 cut(s) 894, 899
TaiI ACGT 3 cut(s) 731, 945, 1169
TaqI TCGA 7 cut(s) 152, 156, 174, 189, 858, 993, 1085
TaqII GACCGA 1 cut(s) 793
TasI AATT 7 cut(s) 54, 185, 429, 484, 555, 625, 721
TatI WGTACW 7 cut(s) 397, 592, 681, 708, 848, 869, 894
TfiI GAWTC 1 cut(s) 1018
Tru1I TTAA 3 cut(s) 666, 714, 788
Tru9I TTAA 3 cut(s) 666, 714, 788
TscAI CASTG 2 cut(s) 771, 1067
TseFI GTSAC 1 cut(s) 292
TseI GCWGC 5 cut(s) 38, 70, 215, 329, 752
Tsp45I GTSAC 1 cut(s) 292
TspDTI ATGAA 5 cut(s) 75, 409, 1019, 1090, 1118
TspRI CASTG 2 cut(s) 771, 1067
VpaK11BI GGWCC 1 cut(s) 805
XapI RAATTY 2 cut(s) 185, 484
XceI RCATGY 1 cut(s) 796
XcmI CCANNNNNNNNNTGG 1 cut(s) 763
XspI CTAG 3 cut(s) 219, 489, 830
ZrmI AGTACT 7 cut(s) 399, 594, 683, 710, 850, 871, 896
Zsp2I ATGCAT 2 cut(s) 363, 1150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.