MD16G1073300.v1.1

No apical meristem (NAM) protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0016837
Physical Location & Seq
Reverse (-)
5142711 .. 5144632
1922 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1073300.v1.1.491

Sequence Viewer

Length: 1395 bp
ATGGATGAGAGAAGTGATAATATCGGAGGAGAAAAAATGGATGAAGTGATCCTTCCAGGGTTTCGTTTTCATCCAACTGATGAGGAGCTGGTAGGGTTTTACCTCAAGAGGAAGGTTCAGCAGAGGCCTCTCTCTATCGAGCTTATCAAGCAACTTGACATCTATAAATTTGACCCCTGGGATCTTCCAAAGTTGGCAGCGTCTGGGGAGAAGGAATGGTATTTCTACTGTCCAAGGGATAGAAAATATAGGAACAGCACAAGGCCAAACCGGGTTACCGGAGCCGGTTTCTGGAAAGCTACGGGAACCGACCGGCCCATCTACTCATCCGAAGGTGCGTGTAGTTCCTCCAAGTGCATTGGGTTGAAGAAGTCACTTGTTTTCTACAAAGGTAGAGCTGCCAAAGGGGTGAAAACTGACTGGATGATGCATGAGTTTCGCTTACCTTCTCTCACAGATTCACTCCCACCAAAGAGATCATCATCGTTCATGGACAAAACCATTCCTGCAAATGATTCATGGGCAATATGCAGGATATTCAAGAAAACAAATTCAAGTAATGCTCACCAAAGAGCCCTTTCTCATCACTCTTGGGTGTCTGCCTTGCCTGAAACAAACACATTTGGTGATCATATGCTAGGCTCCAAAGGTGCACACAATGCTACTCATCATCATCATGAGTTTAGTTCAGAGAGCATGTCAATACTGACATCGAAAATCAACTTCTCCAACAACAATGACATAAAAATGTCATCCACAACAAGCAATATATCCCCTCTAGATATTTATTCCAACTCCTACAAACCCATAAACCCCTTGATGATGGGTTGCAATGTCAAACTACCCCATCAGTACTTTCCCATTTCCTCCAACTTTTCTAACAGATCATCAGACTACTTTTCTAACCCTAGCTTCGCATTTTCATCACCTTCAGAAACTTCATCCGGACCAGCGGCAAAATGCACGGTGGATGTGTCCTCCTTGTTGTTAAACATGTCATCCTCAATGCTCGGAGATTACAATGGCAGCAACAACGTCAAGGGCGCCTCTGGAGAAAGTACTAATTTTGACTTTAGTATTACTAATGGAGGCTTTTCATCGATGGCATTGCCACATCATCATGAGGTCATGCAAGGAAATAACAATAACCTTGGCAATGGCCATGACAGTATAACTGGGTTGATTAAGAACATTCAAAATGTGAACTCGAACGTGATAGAAGAAGGAGACGATCAACAGTGGGAGACTAGTGGGAGATCAAATATTGGGTTTCCATTGATGAGTAGTTTGCCTTTGCCTATGAATGTAGGAGGAGGGGATGCATGGAAGTCGAGTTTGACGTGGGAGTCTTCTCCATGTCCGAGTGAAATGTCCACCACCAGATGCTACACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

465

Amino Acids

51.5

Weight (kDa)

7.66

Isoelectric Point (pI)

50.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 19 - 148 2.6e-47 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016837)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g31420
malus_domestica MD13G1072500.v1.1 MD16G1073300.v1.1
prunus_persica Prupe.1G274300_v2.0.a1
pyrus_communis pycom13g06500
rosa_chinensis RchiOBHm_Chr4g0439901
rosa_laevigata RLG00000006228
rosa_multiflora Rmu_sc0000497.1_g000002
rosa_roxburghii Rroxscaffold_5G00380850
rosa_rugosa Rorug04G0322200
rosa_samantha Rh4AG373200 Rh4CG400000 Rh4DG379800
rosa_wichuraiana Rw4G031910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1345
AccB1I GGYRCC 1 cut(s) 1043
AccIII TCCGGA 1 cut(s) 944
AciI CCGC 1 cut(s) 953
AclWI GGATC 2 cut(s) 43, 189
AcoI YGGCCR 1 cut(s) 1159
AcsI RAATTY 2 cut(s) 167, 550
AcuI CTGAAG 1 cut(s) 915
AcyI GRCGYC 1 cut(s) 1044
AfaI GTAC 2 cut(s) 854, 1060
AfiI CCNNNNNNNGG 1 cut(s) 291
AflIII ACRYGT 1 cut(s) 993
AgsI TTSAA 4 cut(s) 367, 541, 555, 1196
AhlI ACTAGT 1 cut(s) 1247
AjiI CACGTC 1 cut(s) 1341
AjnI CCWGG 2 cut(s) 55, 176
AluBI AGCT 5 cut(s) 88, 142, 299, 398, 912
AluI AGCT 5 cut(s) 88, 142, 299, 398, 912
Alw21I GWGCWC 1 cut(s) 655
Alw26I GTCTC 2 cut(s) 1221, 1238
Alw44I GTGCAC 1 cut(s) 651
AlwI GGATC 2 cut(s) 43, 189
AlwNI CAGNNNCTG 1 cut(s) 203
Aor13HI TCCGGA 1 cut(s) 944
AoxI GGCC 4 cut(s) 125, 263, 314, 1159
ApaLI GTGCAC 1 cut(s) 651
ApeKI GCWGC 3 cut(s) 197, 398, 1026
ApoI RAATTY 2 cut(s) 167, 550
AspLEI GCGC 1 cut(s) 1046
AspS9I GGNCC 2 cut(s) 315, 947
AsuC2I CCSGG 1 cut(s) 272
AsuHPI GGTGA 4 cut(s) 421, 557, 638, 918
AvaII GGWCC 1 cut(s) 947
BaeGI GKGCMC 1 cut(s) 655
BalI TGGCCA 1 cut(s) 1161
BanI GGYRCC 1 cut(s) 1043
BanII GRGCYC 1 cut(s) 577
BbsI GAAGAC 1 cut(s) 1341
Bbv12I GWGCWC 1 cut(s) 655
BbvI GCAGC 3 cut(s) 209, 385, 1038
BccI CCATC 4 cut(s) 326, 817, 855, 1096
BcgI CGANNNNNNTGC 6 cut(s) 419, 453, 1090, 1124, 1311, 1345
BciT130I CCWGG 2 cut(s) 57, 178
BclI TGATCA 1 cut(s) 628
BcnI CCSGG 1 cut(s) 272
BcoDI GTCTC 2 cut(s) 1221, 1238
BcuI ACTAGT 1 cut(s) 1247
BfaI CTAG 4 cut(s) 638, 779, 909, 1248
BfoI RGCGCY 1 cut(s) 1047
BisI GCNGC 4 cut(s) 198, 399, 954, 1027
BlsI GCNGC 4 cut(s) 199, 400, 955, 1028
BmcAI AGTACT 2 cut(s) 854, 1060
Bme1390I CCNGG 3 cut(s) 57, 178, 272
Bme18I GGWCC 1 cut(s) 947
BmgBI CACGTC 1 cut(s) 1341
BmgT120I GGNCC 2 cut(s) 315, 947
BmiI GGNNCC 4 cut(s) 283, 307, 643, 1045
BmrFI CCNGG 3 cut(s) 57, 178, 272
BmrI ACTGGG 1 cut(s) 1185
BmsI GCATC 3 cut(s) 417, 1309, 1373
BmuI ACTGGG 1 cut(s) 1185
BpiI GAAGAC 1 cut(s) 1341
BpmI CTGGAG 1 cut(s) 1071
BpuEI CTTGAG 1 cut(s) 89
BpuMI CCSGG 1 cut(s) 272
Bsa29I ATCGAT 1 cut(s) 1100
BsaBI GATNNNNATC 1 cut(s) 481
BsaHI GRCGYC 1 cut(s) 1044
BsaJI CCNNGG 5 cut(s) 56, 176, 177, 233, 1150
BsaWI WCCGGW 2 cut(s) 278, 944
Bsc4I CCNNNNNNNGG 1 cut(s) 291
Bse118I RCCGGY 2 cut(s) 284, 312
Bse1I ACTGG 2 cut(s) 425, 1180
Bse3DI GCAATG 3 cut(s) 838, 1106, 1162
Bse8I GATNNNNATC 1 cut(s) 481
BseAI TCCGGA 1 cut(s) 944
BseBI CCWGG 2 cut(s) 57, 178
BseCI ATCGAT 1 cut(s) 1100
BseDI CCNNGG 5 cut(s) 56, 176, 177, 233, 1150
BseJI GATNNNNATC 1 cut(s) 481
BseLI CCNNNNNNNGG 1 cut(s) 291
BseMI GCAATG 3 cut(s) 838, 1106, 1162
BseNI ACTGG 2 cut(s) 425, 1180
BseRI GAGGAG 3 cut(s) 42, 98, 1326
BseSI GKGCMC 1 cut(s) 655
BseXI GCAGC 3 cut(s) 209, 385, 1038
Bsh1285I CGRYCG 1 cut(s) 313
BshFI GGCC 4 cut(s) 127, 265, 316, 1161
BshNI GGYRCC 1 cut(s) 1043
BshVI ATCGAT 1 cut(s) 1100
BsiEI CGRYCG 1 cut(s) 313
BsiHKAI GWGCWC 1 cut(s) 655
BsiSI CCGG 5 cut(s) 271, 279, 285, 313, 945
BslI CCNNNNNNNGG 1 cut(s) 291
BsmAI GTCTC 2 cut(s) 1221, 1238
BsmBI CGTCTC 1 cut(s) 1221
BsnI GGCC 4 cut(s) 127, 265, 316, 1161
Bsp1286I GDGCHC 2 cut(s) 577, 655
Bsp13I TCCGGA 1 cut(s) 944
Bsp143I GATC 7 cut(s) 48, 181, 476, 628, 884, 1231, 1256
BspACI CCGC 1 cut(s) 953
BspANI GGCC 4 cut(s) 127, 265, 316, 1161
BspDI ATCGAT 1 cut(s) 1100
BspEI TCCGGA 1 cut(s) 944
BspHI TCATGA 2 cut(s) 676, 1120
BspLI GGNNCC 4 cut(s) 283, 307, 643, 1045
BspPI GGATC 2 cut(s) 43, 189
BspT107I GGYRCC 1 cut(s) 1043
BsrDI GCAATG 3 cut(s) 838, 1106, 1162
BsrFI RCCGGY 2 cut(s) 284, 312
BsrI ACTGG 2 cut(s) 425, 1180
BssAI RCCGGY 2 cut(s) 284, 312
BssECI CCNNGG 5 cut(s) 56, 176, 177, 233, 1150
BssMI GATC 7 cut(s) 48, 181, 476, 628, 884, 1231, 1256
BssNI GRCGYC 1 cut(s) 1044
BssT1I CCWWGG 2 cut(s) 233, 1150
Bst2UI CCWGG 2 cut(s) 57, 178
Bst4CI ACNGT 4 cut(s) 230, 967, 1169, 1239
BstACI GRCGYC 1 cut(s) 1044
BstAPI GCANNNNNTGC 1 cut(s) 659
BstEII GGTNACC 1 cut(s) 274
BstH2I RGCGCY 1 cut(s) 1047
BstHHI GCGC 1 cut(s) 1046
BstKTI GATC 7 cut(s) 51, 184, 479, 631, 887, 1234, 1259
BstMAI GTCTC 2 cut(s) 1221, 1238
BstMBI GATC 7 cut(s) 48, 181, 476, 628, 884, 1231, 1256
BstMCI CGRYCG 1 cut(s) 313
BstMWI GCNNNNNNNGC 2 cut(s) 148, 659
BstNI CCWGG 2 cut(s) 57, 178
BstNSI RCATGY 2 cut(s) 700, 997
BstPI GGTNACC 1 cut(s) 274
BstSCI CCNGG 3 cut(s) 55, 176, 270
BstSLI GKGCMC 1 cut(s) 655
BstV1I GCAGC 3 cut(s) 209, 385, 1038
BstV2I GAAGAC 1 cut(s) 1341
BstX2I RGATCY 1 cut(s) 181
BstYI RGATCY 1 cut(s) 181
Bsu15I ATCGAT 1 cut(s) 1100
BsuRI GGCC 4 cut(s) 127, 265, 316, 1161
BsuTUI ATCGAT 1 cut(s) 1100
BtrI CACGTC 1 cut(s) 1341
BtsIMutI CAGTG 1 cut(s) 1244
CaiI CAGNNNCTG 1 cut(s) 203
CciI TCATGA 2 cut(s) 676, 1120
CfoI GCGC 1 cut(s) 1046
Cfr10I RCCGGY 2 cut(s) 284, 312
Cfr13I GGNCC 2 cut(s) 315, 947
ClaI ATCGAT 1 cut(s) 1100
CseI GACGC 1 cut(s) 189
Csp6I GTAC 2 cut(s) 853, 1059
CviQI GTAC 2 cut(s) 853, 1059
DinI GGCGCC 1 cut(s) 1045
DpnI GATC 7 cut(s) 50, 183, 478, 630, 886, 1233, 1258
DpnII GATC 7 cut(s) 48, 181, 476, 628, 884, 1231, 1256
DrdI GACNNNNNNGTC 1 cut(s) 1345
DseDI GACNNNNNNGTC 1 cut(s) 1345
EaeI YGGCCR 1 cut(s) 1159
Eco130I CCWWGG 2 cut(s) 233, 1150
Eco147I AGGCCT 1 cut(s) 127
Eco24I GRGCYC 1 cut(s) 577
Eco47I GGWCC 1 cut(s) 947
Eco57I CTGAAG 1 cut(s) 915
Eco91I GGTNACC 1 cut(s) 274
EcoO65I GGTNACC 1 cut(s) 274
EcoRII CCWGG 2 cut(s) 55, 176
EcoT14I CCWWGG 2 cut(s) 233, 1150
EcoT22I ATGCAT 2 cut(s) 432, 1324
EcoT38I GRGCYC 1 cut(s) 577
EgeI GGCGCC 1 cut(s) 1045
EheI GGCGCC 1 cut(s) 1045
ErhI CCWWGG 2 cut(s) 233, 1150
Esp3I CGTCTC 1 cut(s) 1221
FalI AAGNNNNNCTT 2 cut(s) 36, 68
FauNDI CATATG 1 cut(s) 633
FbaI TGATCA 1 cut(s) 628
Fnu4HI GCNGC 4 cut(s) 198, 399, 954, 1027
FriOI GRGCYC 1 cut(s) 577
Fsp4HI GCNGC 4 cut(s) 198, 399, 954, 1027
FspBI CTAG 4 cut(s) 638, 779, 909, 1248
GlaI GCGC 1 cut(s) 1045
GluI GCNGC 4 cut(s) 198, 399, 954, 1027
GsuI CTGGAG 1 cut(s) 1071
HaeII RGCGCY 1 cut(s) 1047
HaeIII GGCC 4 cut(s) 127, 265, 316, 1161
HapII CCGG 5 cut(s) 271, 279, 285, 313, 945
HgaI GACGC 1 cut(s) 189
HhaI GCGC 1 cut(s) 1046
Hin1I GRCGYC 1 cut(s) 1044
Hin6I GCGC 1 cut(s) 1044
HinP1I GCGC 1 cut(s) 1044
HinfI GANTC 3 cut(s) 458, 515, 1346
HpaII CCGG 5 cut(s) 271, 279, 285, 313, 945
HphI GGTGA 4 cut(s) 421, 557, 638, 918
Hpy166II GTNNAC 3 cut(s) 653, 1204, 1374
Hpy188I TCNGA 7 cut(s) 26, 331, 691, 892, 934, 1013, 1362
Hpy188III TCNNGA 8 cut(s) 106, 292, 541, 677, 779, 945, 1050, 1121
Hpy8I GTNNAC 3 cut(s) 653, 1204, 1374
HpyAV CCTTC 7 cut(s) 62, 106, 205, 326, 456, 939, 1217
HpyCH4III ACNGT 4 cut(s) 230, 967, 1169, 1239
HpyCH4IV ACGT 3 cut(s) 1035, 1212, 1340
HpyCH4V TGCA 9 cut(s) 357, 430, 509, 531, 653, 831, 963, 1132, 1322
HpyF10VI GCNNNNNNNGC 2 cut(s) 148, 659
HpySE526I ACGT 3 cut(s) 1035, 1212, 1340
Hsp92I GRCGYC 1 cut(s) 1044
HspAI GCGC 1 cut(s) 1044
KasI GGCGCC 1 cut(s) 1043
Kpn2I TCCGGA 1 cut(s) 944
Ksp22I TGATCA 1 cut(s) 628
Kzo9I GATC 7 cut(s) 48, 181, 476, 628, 884, 1231, 1256
LmnI GCTCC 3 cut(s) 85, 281, 647
Lsp1109I GCAGC 3 cut(s) 209, 385, 1038
LweI GCATC 3 cut(s) 417, 1309, 1373
MaeI CTAG 4 cut(s) 638, 779, 909, 1248
MaeII ACGT 3 cut(s) 1035, 1212, 1340
MaeIII GTNAC 2 cut(s) 274, 372
MalI GATC 7 cut(s) 50, 183, 478, 630, 886, 1233, 1258
MboI GATC 7 cut(s) 48, 181, 476, 628, 884, 1231, 1256
MboII GAAGA 4 cut(s) 176, 379, 1232, 1341
MflI RGATCY 1 cut(s) 181
MhlI GDGCHC 2 cut(s) 577, 655
MlsI TGGCCA 1 cut(s) 1161
MluCI AATT 3 cut(s) 167, 550, 1063
MluNI TGGCCA 1 cut(s) 1161
Mly113I GGCGCC 1 cut(s) 1044
MlyI GAGTC 1 cut(s) 1355
MmeI TCCRAC 4 cut(s) 98, 753, 816, 894
Mox20I TGGCCA 1 cut(s) 1161
Mph1103I ATGCAT 2 cut(s) 432, 1324
MroI TCCGGA 1 cut(s) 944
MscI TGGCCA 1 cut(s) 1161
MseI TTAA 3 cut(s) 989, 1185, 1393
MslI CAYNNNNRTG 3 cut(s) 675, 746, 1119
Msp20I TGGCCA 1 cut(s) 1161
MspA1I CMGCKG 1 cut(s) 953
MspI CCGG 5 cut(s) 271, 279, 285, 313, 945
MspR9I CCNGG 3 cut(s) 57, 178, 272
MvaI CCWGG 2 cut(s) 57, 178
MwoI GCNNNNNNNGC 2 cut(s) 148, 659
NarI GGCGCC 1 cut(s) 1044
NciI CCSGG 1 cut(s) 272
NdeI CATATG 1 cut(s) 633
NdeII GATC 7 cut(s) 48, 181, 476, 628, 884, 1231, 1256
NlaIV GGNNCC 4 cut(s) 283, 307, 643, 1045
NmuCI GTSAC 1 cut(s) 372
NsiI ATGCAT 2 cut(s) 432, 1324
NspI RCATGY 2 cut(s) 700, 997
PagI TCATGA 2 cut(s) 676, 1120
PasI CCCWGGG 1 cut(s) 177
PceI AGGCCT 1 cut(s) 127
PciI ACATGT 1 cut(s) 993
PcsI WCGNNNNNNNCGW 1 cut(s) 1337
PfeI GAWTC 2 cut(s) 458, 515
PkrI GCNGC 4 cut(s) 199, 400, 955, 1028
PleI GAGTC 1 cut(s) 1354
PluTI GGCGCC 1 cut(s) 1047
PpsI GAGTC 1 cut(s) 1354
PscI ACATGT 1 cut(s) 993
Psp6I CCWGG 2 cut(s) 55, 176
PspEI GGTNACC 1 cut(s) 274
PspGI CCWGG 2 cut(s) 55, 176
PspN4I GGNNCC 4 cut(s) 283, 307, 643, 1045
PspPI GGNCC 2 cut(s) 315, 947
PstNI CAGNNNCTG 1 cut(s) 203
PsuI RGATCY 1 cut(s) 181
RsaI GTAC 2 cut(s) 854, 1060
RsaNI GTAC 2 cut(s) 853, 1059
RseI CAYNNNNRTG 3 cut(s) 675, 746, 1119
SaqAI TTAA 3 cut(s) 989, 1185, 1393
SatI GCNGC 4 cut(s) 198, 399, 954, 1027
Sau3AI GATC 7 cut(s) 48, 181, 476, 628, 884, 1231, 1256
Sau96I GGNCC 2 cut(s) 315, 947
ScaI AGTACT 2 cut(s) 854, 1060
SchI GAGTC 1 cut(s) 1355
ScrFI CCNGG 3 cut(s) 57, 178, 272
SduI GDGCHC 2 cut(s) 577, 655
SfaNI GCATC 3 cut(s) 417, 1309, 1373
SfoI GGCGCC 1 cut(s) 1045
SinI GGWCC 1 cut(s) 947
SmiMI CAYNNNNRTG 3 cut(s) 675, 746, 1119
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
SpeI ACTAGT 1 cut(s) 1247
Sse9I AATT 3 cut(s) 167, 550, 1063
SseBI AGGCCT 1 cut(s) 127
SsiI CCGC 1 cut(s) 953
SspDI GGCGCC 1 cut(s) 1043
SspI AATATT 1 cut(s) 1264
SspMI CTAG 4 cut(s) 638, 779, 909, 1248
StuI AGGCCT 1 cut(s) 127
StyD4I CCNGG 3 cut(s) 55, 176, 270
StyI CCWWGG 2 cut(s) 233, 1150
TaaI ACNGT 4 cut(s) 230, 967, 1169, 1239
TaiI ACGT 3 cut(s) 1038, 1215, 1343
TaqI TCGA 5 cut(s) 138, 713, 1100, 1208, 1331
TasI AATT 3 cut(s) 167, 550, 1063
TatI WGTACW 2 cut(s) 852, 1058
TauI GCSGC 1 cut(s) 956
TfiI GAWTC 2 cut(s) 458, 515
Tru1I TTAA 3 cut(s) 989, 1185, 1393
Tru9I TTAA 3 cut(s) 989, 1185, 1393
TscAI CASTG 1 cut(s) 1244
TseFI GTSAC 1 cut(s) 372
TseI GCWGC 3 cut(s) 197, 398, 1026
Tsp45I GTSAC 1 cut(s) 372
TspDTI ATGAA 8 cut(s) 57, 59, 478, 507, 912, 930, 1086, 1316
TspRI CASTG 1 cut(s) 1244
VneI GTGCAC 1 cut(s) 651
VpaK11BI GGWCC 1 cut(s) 947
XapI RAATTY 2 cut(s) 167, 550
XbaI TCTAGA 1 cut(s) 778
XceI RCATGY 2 cut(s) 700, 997
XspI CTAG 4 cut(s) 638, 779, 909, 1248
ZrmI AGTACT 2 cut(s) 854, 1060
Zsp2I ATGCAT 2 cut(s) 432, 1324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.