MD13G1072500.v1.1

No apical meristem (NAM) protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0016837
Physical Location & Seq
Reverse (-)
5097034 .. 5098881
1848 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1072500.v1.1.491

Sequence Viewer

Length: 1389 bp
ATGGATGAGAGAAGTGATAATATTGAAGGAGAAAAAATGGATGAAGTGATGCTGCCAGGGTTTCGTTTTCATCCAACTGATGAGGAGCTGGTAGGGTTTTATCTCAAGAGGAAGGTTCAGCAGAGGCCCCTCTCTATTGAGCTCATCAAGCAACTCGACATCTATAAATTTGACCCCTGGGATCTTCCGAAGTTGGCAGCTTCTGGGGAGAAAGAGTGGTATTTCTACTGTCCAAGGGACAGAAAATACAGAAACAGCACAAGGCCTAACAGGGTTACCGGAGCCGGGTTCTGGAAAGCAACAGGAACCGACCGTCCCATCTATTCATCCGAAGATGCATGTAGTTCCTCCAAGTGTATTGGGTTGAAGAAGTCTCTTGTTTTCTACAAAGGTAGAGCTGCCAAAGGGGTCAAAACCGACTGGATGATGCATGAGTTTCGTTTACCTTCTCTCACGGATTCACTCCCACCAAAGAGATCATCATCGTTCATGGACAAAACTATTCCTGCAAATGATTCATGGGCAATATGCAGGATATTTAAGAAAACAAATTCAAGTAATGCTCACCAAAGAGCCCTTTCTAATCACTCTTGGGTGTCTGCCTTGCCTGAAACAAACACTTTTGGTGATCATATGTTAGGCTCCAAAGGTGCACACAATACAACTCATCAACATCATGAGTTTAGTTCAGAGAGCCTGACATCAAAAACCAACTTCTCTGGCAACAACAATGACATACAAATCTCATCCACAACAAGCAATATATCCCCTCTAGATATTTATCCCAACTCCTACAAACCCGTAAACCCCCTGATGATGGGTTGCAATGTCAAACTACCCTATCAGTACTTTCCCATTTCCTCCAATTTTCCCAGTGGATCATCAGATTACTTTTCTAACCCTAGCTTCACATTTCCATCACCTCTAGAAACTTCATCCGGACCAGCAGCTGAAAAATGCACGGTGGATGTGTCCTCCTTCTTGTTAAACATGTCATCCTCGATGGTTGGAGATTACAATGGCAGCAACAACGTCAAGGGCTCCTCTGCAGAGAGTACTAATTTTGACTTTAGTACTAACGGAGGCTTTTCGTCGACGGCATTGCCACATCATCATGAGATCATGCAAGGAAGTAATAATAACCTTGGCAATGTTTATGACAATATAGCTGGGTTGATTAAAAACATTCAAAATGTGAACTCGAACGTGACAGAAGAAAGAGACGATCATCAGTGGGAGACAAGTGCGAGATCAAATATTGGGTTTCCATTGATGAGTAGTTTGCCTTTGCCTATGGATGTAGGAGGAGGGGATGCATGGAAGTCGAGTTTGACGTGGGAGTCTTCGCCATGTCCGACTGAAATGTCCACAACCAGATGCTATACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

463

Amino Acids

51.52

Weight (kDa)

6.36

Isoelectric Point (pI)

48.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 19 - 148 2.6e-47 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016837)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g31420
malus_domestica MD13G1072500.v1.1 MD16G1073300.v1.1
prunus_persica Prupe.1G274300_v2.0.a1
pyrus_communis pycom13g06500
rosa_chinensis RchiOBHm_Chr4g0439901
rosa_laevigata RLG00000006228
rosa_multiflora Rmu_sc0000497.1_g000002
rosa_roxburghii Rroxscaffold_5G00380850
rosa_rugosa Rorug04G0322200
rosa_samantha Rh4AG373200 Rh4CG400000 Rh4DG379800
rosa_wichuraiana Rw4G031910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 1339, 1363
AccI GTMKAC 1 cut(s) 1094
AccIII TCCGGA 1 cut(s) 938
AclWI GGATC 2 cut(s) 189, 886
AcsI RAATTY 2 cut(s) 167, 550
AfaI GTAC 3 cut(s) 848, 1057, 1075
AfiI CCNNNNNNNGG 3 cut(s) 285, 291, 817
AflIII ACRYGT 1 cut(s) 990
AgsI TTSAA 4 cut(s) 26, 367, 555, 1190
AjiI CACGTC 1 cut(s) 1335
AjnI CCWGG 2 cut(s) 55, 176
AloI GAACNNNNNNTCC 2 cut(s) 298, 330
AluBI AGCT 7 cut(s) 88, 142, 200, 398, 906, 950, 1169
AluI AGCT 7 cut(s) 88, 142, 200, 398, 906, 950, 1169
Alw21I GWGCWC 2 cut(s) 144, 655
Alw26I GTCTC 3 cut(s) 378, 1215, 1232
Alw44I GTGCAC 1 cut(s) 651
AlwI GGATC 2 cut(s) 189, 886
AlwNI CAGNNNCTG 2 cut(s) 203, 950
Aor13HI TCCGGA 1 cut(s) 938
AoxI GGCC 2 cut(s) 125, 263
ApaLI GTGCAC 1 cut(s) 651
ApeKI GCWGC 5 cut(s) 52, 197, 398, 947, 1023
ApoI RAATTY 2 cut(s) 167, 550
AspS9I GGNCC 2 cut(s) 126, 941
AsuC2I CCSGG 1 cut(s) 286
AsuHPI GGTGA 3 cut(s) 557, 638, 912
AvaII GGWCC 1 cut(s) 941
BaeGI GKGCMC 1 cut(s) 655
BanII GRGCYC 3 cut(s) 144, 577, 1043
BbsI GAAGAC 1 cut(s) 1335
Bbv12I GWGCWC 2 cut(s) 144, 655
BbvI GCAGC 5 cut(s) 39, 209, 385, 959, 1035
BccI CCATC 4 cut(s) 326, 811, 925, 997
BceAI ACGGC 1 cut(s) 1113
BcgI CGANNNNNNTGC 6 cut(s) 419, 453, 1084, 1118, 1305, 1339
BciT130I CCWGG 2 cut(s) 57, 178
BclI TGATCA 1 cut(s) 628
BcnI CCSGG 1 cut(s) 286
BcoDI GTCTC 3 cut(s) 378, 1215, 1232
BfaI CTAG 3 cut(s) 773, 903, 926
BfmI CTRYAG 1 cut(s) 1047
BisI GCNGC 5 cut(s) 53, 198, 399, 948, 1024
BlsI GCNGC 5 cut(s) 54, 199, 400, 949, 1025
BmcAI AGTACT 3 cut(s) 848, 1057, 1075
Bme1390I CCNGG 3 cut(s) 57, 178, 286
Bme18I GGWCC 1 cut(s) 941
BmgBI CACGTC 1 cut(s) 1335
BmgT120I GGNCC 2 cut(s) 126, 941
BmiI GGNNCC 5 cut(s) 128, 283, 307, 643, 1042
BmrFI CCNGG 3 cut(s) 57, 178, 286
BmrI ACTGGG 1 cut(s) 867
BmsI GCATC 5 cut(s) 39, 325, 417, 1303, 1367
BmuI ACTGGG 1 cut(s) 867
BpiI GAAGAC 1 cut(s) 1335
BpuEI CTTGAG 1 cut(s) 89
BpuMI CCSGG 1 cut(s) 286
BsaBI GATNNNNATC 2 cut(s) 481, 780
BsaJI CCNNGG 5 cut(s) 56, 176, 177, 233, 1144
BsaWI WCCGGW 2 cut(s) 278, 938
BsaXI ACNNNNNCTCC 2 cut(s) 200, 230
Bsc4I CCNNNNNNNGG 3 cut(s) 285, 291, 817
Bse1I ACTGG 2 cut(s) 425, 873
Bse3DI GCAATG 3 cut(s) 832, 1100, 1156
Bse8I GATNNNNATC 2 cut(s) 481, 780
BseAI TCCGGA 1 cut(s) 938
BseBI CCWGG 2 cut(s) 57, 178
BseDI CCNNGG 5 cut(s) 56, 176, 177, 233, 1144
BseJI GATNNNNATC 2 cut(s) 481, 780
BseLI CCNNNNNNNGG 3 cut(s) 285, 291, 817
BseMI GCAATG 3 cut(s) 832, 1100, 1156
BseNI ACTGG 2 cut(s) 425, 873
BseRI GAGGAG 3 cut(s) 98, 1033, 1320
BseSI GKGCMC 1 cut(s) 655
BseXI GCAGC 5 cut(s) 39, 209, 385, 959, 1035
BseYI CCCAGC 1 cut(s) 1169
Bsh1285I CGRYCG 1 cut(s) 313
BshFI GGCC 2 cut(s) 127, 265
BsiEI CGRYCG 1 cut(s) 313
BsiHKAI GWGCWC 2 cut(s) 144, 655
BsiSI CCGG 3 cut(s) 279, 285, 939
BslFI GGGAC 2 cut(s) 251, 300
BslI CCNNNNNNNGG 3 cut(s) 285, 291, 817
BsmAI GTCTC 3 cut(s) 378, 1215, 1232
BsmBI CGTCTC 1 cut(s) 1215
BsmFI GGGAC 2 cut(s) 251, 300
BsnI GGCC 2 cut(s) 127, 265
Bsp1286I GDGCHC 4 cut(s) 144, 577, 655, 1043
Bsp13I TCCGGA 1 cut(s) 938
Bsp143I GATC 7 cut(s) 181, 476, 628, 878, 1119, 1225, 1250
BspANI GGCC 2 cut(s) 127, 265
BspEI TCCGGA 1 cut(s) 938
BspHI TCATGA 2 cut(s) 676, 1114
BspLI GGNNCC 5 cut(s) 128, 283, 307, 643, 1042
BspMAI CTGCAG 1 cut(s) 1051
BspPI GGATC 2 cut(s) 189, 886
BsrDI GCAATG 3 cut(s) 832, 1100, 1156
BsrI ACTGG 2 cut(s) 425, 873
BssECI CCNNGG 5 cut(s) 56, 176, 177, 233, 1144
BssMI GATC 7 cut(s) 181, 476, 628, 878, 1119, 1225, 1250
BssT1I CCWWGG 2 cut(s) 233, 1144
Bst2UI CCWGG 2 cut(s) 57, 178
Bst4CI ACNGT 3 cut(s) 230, 314, 964
BstEII GGTNACC 1 cut(s) 274
BstKTI GATC 7 cut(s) 184, 479, 631, 881, 1122, 1228, 1253
BstMAI GTCTC 3 cut(s) 378, 1215, 1232
BstMBI GATC 7 cut(s) 181, 476, 628, 878, 1119, 1225, 1250
BstMCI CGRYCG 1 cut(s) 313
BstMWI GCNNNNNNNGC 1 cut(s) 148
BstNI CCWGG 2 cut(s) 57, 178
BstNSI RCATGY 2 cut(s) 342, 994
BstPI GGTNACC 1 cut(s) 274
BstSCI CCNGG 3 cut(s) 55, 176, 284
BstSFI CTRYAG 1 cut(s) 1047
BstSLI GKGCMC 1 cut(s) 655
BstV1I GCAGC 5 cut(s) 39, 209, 385, 959, 1035
BstV2I GAAGAC 1 cut(s) 1335
BstX2I RGATCY 1 cut(s) 181
BstYI RGATCY 1 cut(s) 181
BsuRI GGCC 2 cut(s) 127, 265
BtrI CACGTC 1 cut(s) 1335
BtsIMutI CAGTG 2 cut(s) 880, 1238
CaiI CAGNNNCTG 2 cut(s) 203, 950
CciI TCATGA 2 cut(s) 676, 1114
Cfr13I GGNCC 2 cut(s) 126, 941
Csp6I GTAC 3 cut(s) 847, 1056, 1074
CviQI GTAC 3 cut(s) 847, 1056, 1074
DpnI GATC 7 cut(s) 183, 478, 630, 880, 1121, 1227, 1252
DpnII GATC 7 cut(s) 181, 476, 628, 878, 1119, 1225, 1250
DrdI GACNNNNNNGTC 2 cut(s) 1339, 1363
DseDI GACNNNNNNGTC 2 cut(s) 1339, 1363
Ecl136II GAGCTC 1 cut(s) 142
Eco130I CCWWGG 2 cut(s) 233, 1144
Eco147I AGGCCT 1 cut(s) 265
Eco24I GRGCYC 3 cut(s) 144, 577, 1043
Eco47I GGWCC 1 cut(s) 941
Eco53kI GAGCTC 1 cut(s) 142
Eco91I GGTNACC 1 cut(s) 274
EcoICRI GAGCTC 1 cut(s) 142
EcoO109I RGGNCCY 1 cut(s) 126
EcoO65I GGTNACC 1 cut(s) 274
EcoRII CCWGG 2 cut(s) 55, 176
EcoT14I CCWWGG 2 cut(s) 233, 1144
EcoT22I ATGCAT 3 cut(s) 340, 432, 1318
EcoT38I GRGCYC 3 cut(s) 144, 577, 1043
ErhI CCWWGG 2 cut(s) 233, 1144
Esp3I CGTCTC 1 cut(s) 1215
FaqI GGGAC 2 cut(s) 251, 300
FauNDI CATATG 1 cut(s) 633
FbaI TGATCA 1 cut(s) 628
FblI GTMKAC 1 cut(s) 1094
Fnu4HI GCNGC 5 cut(s) 53, 198, 399, 948, 1024
FriOI GRGCYC 3 cut(s) 144, 577, 1043
Fsp4HI GCNGC 5 cut(s) 53, 198, 399, 948, 1024
FspBI CTAG 3 cut(s) 773, 903, 926
GluI GCNGC 5 cut(s) 53, 198, 399, 948, 1024
GsaI CCCAGC 1 cut(s) 1173
HaeIII GGCC 2 cut(s) 127, 265
HapII CCGG 3 cut(s) 279, 285, 939
HincII GTYRAC 1 cut(s) 1095
HindII GTYRAC 1 cut(s) 1095
HinfI GANTC 3 cut(s) 458, 515, 1340
HpaII CCGG 3 cut(s) 279, 285, 939
HphI GGTGA 3 cut(s) 557, 638, 912
Hpy166II GTNNAC 6 cut(s) 443, 653, 805, 1095, 1198, 1368
Hpy188I TCNGA 5 cut(s) 189, 331, 691, 886, 1356
Hpy188III TCNNGA 7 cut(s) 106, 292, 677, 773, 926, 939, 1115
Hpy8I GTNNAC 6 cut(s) 443, 653, 805, 1095, 1198, 1368
Hpy99I CGWCG 2 cut(s) 1096, 1099
HpyAV CCTTC 4 cut(s) 20, 106, 456, 988
HpyCH4III ACNGT 3 cut(s) 230, 314, 964
HpyCH4IV ACGT 3 cut(s) 1032, 1206, 1334
HpyF10VI GCNNNNNNNGC 1 cut(s) 148
HpySE526I ACGT 3 cut(s) 1032, 1206, 1334
Kpn2I TCCGGA 1 cut(s) 938
Ksp22I TGATCA 1 cut(s) 628
Kzo9I GATC 7 cut(s) 181, 476, 628, 878, 1119, 1225, 1250
LmnI GCTCC 4 cut(s) 85, 281, 647, 1046
Lsp1109I GCAGC 5 cut(s) 39, 209, 385, 959, 1035
LweI GCATC 5 cut(s) 39, 325, 417, 1303, 1367
MaeI CTAG 3 cut(s) 773, 903, 926
MaeII ACGT 3 cut(s) 1032, 1206, 1334
MaeIII GTNAC 2 cut(s) 274, 1207
MalI GATC 7 cut(s) 183, 478, 630, 880, 1121, 1227, 1252
MboI GATC 7 cut(s) 181, 476, 628, 878, 1119, 1225, 1250
MboII GAAGA 5 cut(s) 176, 344, 379, 1226, 1335
MflI RGATCY 1 cut(s) 181
MhlI GDGCHC 4 cut(s) 144, 577, 655, 1043
MluCI AATT 4 cut(s) 167, 550, 865, 1060
MlyI GAGTC 1 cut(s) 1349
MmeI TCCRAC 3 cut(s) 98, 988, 1379
Mph1103I ATGCAT 3 cut(s) 340, 432, 1318
MroI TCCGGA 1 cut(s) 938
MseI TTAA 4 cut(s) 540, 986, 1179, 1387
MslI CAYNNNNRTG 1 cut(s) 1113
MspA1I CMGCKG 1 cut(s) 950
MspI CCGG 3 cut(s) 279, 285, 939
MspR9I CCNGG 3 cut(s) 57, 178, 286
MvaI CCWGG 2 cut(s) 57, 178
MwoI GCNNNNNNNGC 1 cut(s) 148
NciI CCSGG 1 cut(s) 286
NdeI CATATG 1 cut(s) 633
NdeII GATC 7 cut(s) 181, 476, 628, 878, 1119, 1225, 1250
NlaIV GGNNCC 5 cut(s) 128, 283, 307, 643, 1042
NmuCI GTSAC 1 cut(s) 1207
NsiI ATGCAT 3 cut(s) 340, 432, 1318
NspI RCATGY 2 cut(s) 342, 994
PagI TCATGA 2 cut(s) 676, 1114
PasI CCCWGGG 1 cut(s) 177
PceI AGGCCT 1 cut(s) 265
PciI ACATGT 1 cut(s) 990
PcsI WCGNNNNNNNCGW 2 cut(s) 1331, 1352
PfeI GAWTC 2 cut(s) 458, 515
PkrI GCNGC 5 cut(s) 54, 199, 400, 949, 1025
PleI GAGTC 1 cut(s) 1348
PpsI GAGTC 1 cut(s) 1348
PscI ACATGT 1 cut(s) 990
Psp124BI GAGCTC 1 cut(s) 144
Psp6I CCWGG 2 cut(s) 55, 176
PspEI GGTNACC 1 cut(s) 274
PspFI CCCAGC 1 cut(s) 1169
PspGI CCWGG 2 cut(s) 55, 176
PspN4I GGNNCC 5 cut(s) 128, 283, 307, 643, 1042
PspPI GGNCC 2 cut(s) 126, 941
PstI CTGCAG 1 cut(s) 1051
PstNI CAGNNNCTG 2 cut(s) 203, 950
PsuI RGATCY 1 cut(s) 181
PvuII CAGCTG 1 cut(s) 950
RsaI GTAC 3 cut(s) 848, 1057, 1075
RsaNI GTAC 3 cut(s) 847, 1056, 1074
RseI CAYNNNNRTG 1 cut(s) 1113
SacI GAGCTC 1 cut(s) 144
SalI GTCGAC 1 cut(s) 1093
SaqAI TTAA 4 cut(s) 540, 986, 1179, 1387
SatI GCNGC 5 cut(s) 53, 198, 399, 948, 1024
Sau3AI GATC 7 cut(s) 181, 476, 628, 878, 1119, 1225, 1250
Sau96I GGNCC 2 cut(s) 126, 941
ScaI AGTACT 3 cut(s) 848, 1057, 1075
SchI GAGTC 1 cut(s) 1349
ScrFI CCNGG 3 cut(s) 57, 178, 286
SduI GDGCHC 4 cut(s) 144, 577, 655, 1043
SfaNI GCATC 5 cut(s) 39, 325, 417, 1303, 1367
SfcI CTRYAG 1 cut(s) 1047
SgrDI CGTCGACG 1 cut(s) 1093
SinI GGWCC 1 cut(s) 941
SmiMI CAYNNNNRTG 1 cut(s) 1113
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
Sse9I AATT 4 cut(s) 167, 550, 865, 1060
SseBI AGGCCT 1 cut(s) 265
SspI AATATT 2 cut(s) 22, 1258
SspMI CTAG 3 cut(s) 773, 903, 926
SstI GAGCTC 1 cut(s) 144
StuI AGGCCT 1 cut(s) 265
StyD4I CCNGG 3 cut(s) 55, 176, 284
StyI CCWWGG 2 cut(s) 233, 1144
TaaI ACNGT 3 cut(s) 230, 314, 964
TaiI ACGT 3 cut(s) 1035, 1209, 1337
TaqI TCGA 5 cut(s) 156, 1001, 1094, 1202, 1325
TasI AATT 4 cut(s) 167, 550, 865, 1060
TatI WGTACW 3 cut(s) 846, 1055, 1073
TfiI GAWTC 2 cut(s) 458, 515
Tru1I TTAA 4 cut(s) 540, 986, 1179, 1387
Tru9I TTAA 4 cut(s) 540, 986, 1179, 1387
TscAI CASTG 2 cut(s) 880, 1238
TseFI GTSAC 1 cut(s) 1207
TseI GCWGC 5 cut(s) 52, 197, 398, 947, 1023
Tsp45I GTSAC 1 cut(s) 1207
TspDTI ATGAA 6 cut(s) 57, 59, 315, 478, 507, 924
TspGWI ACGGA 2 cut(s) 470, 1095
TspRI CASTG 2 cut(s) 880, 1238
VneI GTGCAC 1 cut(s) 651
VpaK11BI GGWCC 1 cut(s) 941
XapI RAATTY 2 cut(s) 167, 550
XbaI TCTAGA 2 cut(s) 772, 925
XceI RCATGY 2 cut(s) 342, 994
XmiI GTMKAC 1 cut(s) 1094
XspI CTAG 3 cut(s) 773, 903, 926
ZrmI AGTACT 3 cut(s) 848, 1057, 1075
Zsp2I ATGCAT 3 cut(s) 340, 432, 1318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.