pycom13g06500

No apical meristem (NAM) protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0016837
Physical Location & Seq
Reverse (-)
4216208 .. 4217954
1747 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g06500.1

Sequence Viewer

Length: 1287 bp
ATGGATGAGAGAAGTGATAATATTGGAGGAGAAAAAATGGATGAAGTGATGCTGCCAGGGTTTCGTTTTCATCCAACTGATGAGGAGCTGGTAGGGTTTTATCTCAAGAGGAAGGTTCAGCAGAGGCCCCTTTCTATTGAGCTCATCAAGCAACTCGACATCTATAAATTTGACCCCTGGGATCTTCCAAAGCTGGCAGCTTCTGGGGAGAAGGAGTGGTATTTCTACTGTCCAAGGGACAGAAAATACAGAAACAGCACAAGGCCTAACAGGGTTACCGGAGCCGGATTCTGGAAAGCAACAGGAACCGACCGTCCCATCTACTCATCCGAAGGTGCATGTAGTTCCTCCAAGTGTATTGGGTTGAAGAAATCTCTTGTTTTCTACAAAGGAAGAGCTGCCAAAGGGGTCAAAACCGACTGGATGATGCATGAGTTTCGTTTACCTTCTCTCACGGATTCACTCCCACCAAAGAGATCATCACCGTTCATGGACAAAACTATTCCTGCAAATGATTCATGGGCAATATGCAGGATATTTAAGAAAACAAATTCAAGTAATGCGCACCAAAAAGCCCTTTCTCATCACTCTTGGGTGTCTGTCTTGCCTGAAACAAACACATTTGGTGATCATATGTTAGGCTCCAAAGGTGCACACAATACAACTCATCAACATCATGAGTTTAGTTCAGAGAGCATGTCAATACTGACATCTAAAACCGACTTCTCTGGCAACAACAATGACATACAAATCTCATCCACAACAAGCAACATATCCCCTCTAGATATTTATCTTAACTCATACAAACCCGTAAACCCCCTGATGATGGGTTGCAATGTCAAACTACCCTATCAGTACTTTCCCATTTCCTCCAATTTTCCCAGTGGATCATCAGGGTACTTTTCTAACCCTAGCTTCCCATTTCCATCACCTCTAGAAACTTCATCCGGACAATCAGCGGCAAAATGCACGGCGGATGTGCCCTCGTTGTTGTTAAACATGTCATCCTCGATGCTTGGAGATTACAATGGCAGCAACAACGTCAAGGGCGCCTCTGCAGAGAGTACTAATTTTGACTTTAGTACTACTAATGGAGGCTTTTCGTCAATGGCATTGCCACATCATCATGAGGTCATGCAAGGAAGTAATAATAACCTTGGCAATGTTTATGACAATATAGCTGGGTTGATTAAAAACATTCAAAATGTGAACTCGAACGTGACAGAAGAAAGAGACGATCGACAGTGGGAGACAAGTGCGATCGATCAAATATTGGGTTTCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

429

Amino Acids

47.73

Weight (kDa)

7.23

Isoelectric Point (pI)

46.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 19 - 148 2e-47 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016837)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g31420
malus_domestica MD13G1072500.v1.1 MD16G1073300.v1.1
prunus_persica Prupe.1G274300_v2.0.a1
pyrus_communis pycom13g06500
rosa_chinensis RchiOBHm_Chr4g0439901
rosa_laevigata RLG00000006228
rosa_multiflora Rmu_sc0000497.1_g000002
rosa_roxburghii Rroxscaffold_5G00380850
rosa_rugosa Rorug04G0322200
rosa_samantha Rh4AG373200 Rh4CG400000 Rh4DG379800
rosa_wichuraiana Rw4G031910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 564
AccB1I GGYRCC 1 cut(s) 1049
AccIII TCCGGA 1 cut(s) 947
AciI CCGC 2 cut(s) 959, 974
AclWI GGATC 2 cut(s) 189, 895
AcsI RAATTY 2 cut(s) 167, 550
AcyI GRCGYC 1 cut(s) 1050
AfaI GTAC 4 cut(s) 857, 899, 1066, 1084
AfiI CCNNNNNNNGG 2 cut(s) 291, 826
AflIII ACRYGT 1 cut(s) 999
AgsI TTSAA 3 cut(s) 367, 555, 1202
AjnI CCWGG 2 cut(s) 55, 176
AloI GAACNNNNNNTCC 2 cut(s) 298, 330
AluBI AGCT 7 cut(s) 88, 142, 193, 200, 398, 915, 1181
AluI AGCT 7 cut(s) 88, 142, 193, 200, 398, 915, 1181
Alw21I GWGCWC 2 cut(s) 144, 655
Alw26I GTCTC 2 cut(s) 1227, 1244
Alw44I GTGCAC 1 cut(s) 651
AlwI GGATC 2 cut(s) 189, 895
AlwNI CAGNNNCTG 1 cut(s) 203
Aor13HI TCCGGA 1 cut(s) 947
AoxI GGCC 2 cut(s) 125, 263
ApaLI GTGCAC 1 cut(s) 651
ApeKI GCWGC 4 cut(s) 52, 197, 398, 1032
ApoI RAATTY 2 cut(s) 167, 550
AspLEI GCGC 2 cut(s) 565, 1052
AspS9I GGNCC 1 cut(s) 126
AsuHPI GGTGA 3 cut(s) 474, 638, 921
BaeGI GKGCMC 2 cut(s) 655, 984
BanI GGYRCC 1 cut(s) 1049
BanII GRGCYC 1 cut(s) 144
Bbv12I GWGCWC 2 cut(s) 144, 655
BbvI GCAGC 4 cut(s) 39, 209, 385, 1044
BccI CCATC 3 cut(s) 326, 820, 934
BceAI ACGGC 1 cut(s) 987
BcgI CGANNNNNNTGC 2 cut(s) 419, 453
BciT130I CCWGG 2 cut(s) 57, 178
BclI TGATCA 1 cut(s) 628
BcoDI GTCTC 2 cut(s) 1227, 1244
BfaI CTAG 3 cut(s) 782, 912, 935
BfmI CTRYAG 1 cut(s) 1056
BfoI RGCGCY 1 cut(s) 1053
BisI GCNGC 5 cut(s) 53, 198, 399, 960, 1033
BlsI GCNGC 5 cut(s) 54, 199, 400, 961, 1034
BmcAI AGTACT 3 cut(s) 857, 1066, 1084
Bme1390I CCNGG 2 cut(s) 57, 178
BmgT120I GGNCC 1 cut(s) 126
BmiI GGNNCC 5 cut(s) 128, 283, 307, 643, 1051
BmrFI CCNGG 2 cut(s) 57, 178
BmrI ACTGGG 1 cut(s) 876
BmsI GCATC 3 cut(s) 39, 417, 1002
BmuI ACTGGG 1 cut(s) 876
BpuEI CTTGAG 1 cut(s) 89
Bsa29I ATCGAT 1 cut(s) 1263
BsaBI GATNNNNATC 1 cut(s) 789
BsaHI GRCGYC 1 cut(s) 1050
BsaJI CCNNGG 5 cut(s) 56, 176, 177, 233, 1156
BsaWI WCCGGW 2 cut(s) 278, 947
BsaXI ACNNNNNCTCC 2 cut(s) 200, 230
Bsc4I CCNNNNNNNGG 2 cut(s) 291, 826
Bse1I ACTGG 2 cut(s) 425, 882
Bse3DI GCAATG 3 cut(s) 841, 1112, 1168
Bse8I GATNNNNATC 1 cut(s) 789
BseAI TCCGGA 1 cut(s) 947
BseBI CCWGG 2 cut(s) 57, 178
BseCI ATCGAT 1 cut(s) 1263
BseDI CCNNGG 5 cut(s) 56, 176, 177, 233, 1156
BseGI GGATG 9 cut(s) 10, 46, 70, 326, 429, 755, 944, 982, 1004
BseJI GATNNNNATC 1 cut(s) 789
BseLI CCNNNNNNNGG 2 cut(s) 291, 826
BseMI GCAATG 3 cut(s) 841, 1112, 1168
BseNI ACTGG 2 cut(s) 425, 882
BseRI GAGGAG 2 cut(s) 42, 98
BseSI GKGCMC 2 cut(s) 655, 984
BseXI GCAGC 4 cut(s) 39, 209, 385, 1044
BseYI CCCAGC 1 cut(s) 1181
Bsh1285I CGRYCG 3 cut(s) 313, 1240, 1263
BshFI GGCC 2 cut(s) 127, 265
BshNI GGYRCC 1 cut(s) 1049
BshVI ATCGAT 1 cut(s) 1263
BsiEI CGRYCG 3 cut(s) 313, 1240, 1263
BsiHKAI GWGCWC 2 cut(s) 144, 655
BsiSI CCGG 3 cut(s) 279, 285, 948
BslFI GGGAC 2 cut(s) 251, 300
BslI CCNNNNNNNGG 2 cut(s) 291, 826
BsmAI GTCTC 2 cut(s) 1227, 1244
BsmBI CGTCTC 1 cut(s) 1227
BsmFI GGGAC 2 cut(s) 251, 300
BsnI GGCC 2 cut(s) 127, 265
Bsp1286I GDGCHC 3 cut(s) 144, 655, 984
Bsp13I TCCGGA 1 cut(s) 947
Bsp143I GATC 7 cut(s) 181, 476, 628, 887, 1237, 1260, 1264
BspACI CCGC 2 cut(s) 959, 974
BspANI GGCC 2 cut(s) 127, 265
BspDI ATCGAT 1 cut(s) 1263
BspEI TCCGGA 1 cut(s) 947
BspHI TCATGA 2 cut(s) 676, 1126
BspLI GGNNCC 5 cut(s) 128, 283, 307, 643, 1051
BspMAI CTGCAG 1 cut(s) 1060
BspPI GGATC 2 cut(s) 189, 895
BspQI GCTCTTC 1 cut(s) 388
BspT107I GGYRCC 1 cut(s) 1049
BsrDI GCAATG 3 cut(s) 841, 1112, 1168
BsrI ACTGG 2 cut(s) 425, 882
BssECI CCNNGG 5 cut(s) 56, 176, 177, 233, 1156
BssMI GATC 7 cut(s) 181, 476, 628, 887, 1237, 1260, 1264
BssNI GRCGYC 1 cut(s) 1050
BssT1I CCWWGG 2 cut(s) 233, 1156
Bst2UI CCWGG 2 cut(s) 57, 178
Bst4CI ACNGT 4 cut(s) 230, 314, 486, 1245
Bst6I CTCTTC 1 cut(s) 388
BstACI GRCGYC 1 cut(s) 1050
BstC8I GCNNGC 1 cut(s) 195
BstEII GGTNACC 1 cut(s) 274
BstF5I GGATG 9 cut(s) 10, 46, 70, 326, 429, 755, 944, 982, 1004
BstH2I RGCGCY 1 cut(s) 1053
BstHHI GCGC 2 cut(s) 565, 1052
BstKTI GATC 7 cut(s) 184, 479, 631, 890, 1240, 1263, 1267
BstMAI GTCTC 2 cut(s) 1227, 1244
BstMBI GATC 7 cut(s) 181, 476, 628, 887, 1237, 1260, 1264
BstMCI CGRYCG 3 cut(s) 313, 1240, 1263
BstMWI GCNNNNNNNGC 1 cut(s) 148
BstNI CCWGG 2 cut(s) 57, 178
BstNSI RCATGY 3 cut(s) 342, 700, 1003
BstPI GGTNACC 1 cut(s) 274
BstSCI CCNGG 2 cut(s) 55, 176
BstSFI CTRYAG 1 cut(s) 1056
BstSLI GKGCMC 2 cut(s) 655, 984
BstV1I GCAGC 4 cut(s) 39, 209, 385, 1044
BstX2I RGATCY 1 cut(s) 181
BstYI RGATCY 1 cut(s) 181
Bsu15I ATCGAT 1 cut(s) 1263
BsuRI GGCC 2 cut(s) 127, 265
BsuTUI ATCGAT 1 cut(s) 1263
BtsCI GGATG 9 cut(s) 10, 46, 70, 326, 429, 755, 944, 982, 1004
BtsIMutI CAGTG 2 cut(s) 889, 1250
Cac8I GCNNGC 1 cut(s) 195
CaiI CAGNNNCTG 1 cut(s) 203
CciI TCATGA 2 cut(s) 676, 1126
CfoI GCGC 2 cut(s) 565, 1052
Cfr13I GGNCC 1 cut(s) 126
ClaI ATCGAT 1 cut(s) 1263
Csp6I GTAC 4 cut(s) 856, 898, 1065, 1083
CviAII CATG 9 cut(s) 339, 431, 490, 519, 677, 697, 1000, 1127, 1135
CviQI GTAC 4 cut(s) 856, 898, 1065, 1083
DinI GGCGCC 1 cut(s) 1051
DpnI GATC 7 cut(s) 183, 478, 630, 889, 1239, 1262, 1266
DpnII GATC 7 cut(s) 181, 476, 628, 887, 1237, 1260, 1264
Eam1104I CTCTTC 1 cut(s) 388
EarI CTCTTC 1 cut(s) 388
EciI GGCGGA 1 cut(s) 989
Ecl136II GAGCTC 1 cut(s) 142
Eco130I CCWWGG 2 cut(s) 233, 1156
Eco147I AGGCCT 1 cut(s) 265
Eco24I GRGCYC 1 cut(s) 144
Eco53kI GAGCTC 1 cut(s) 142
Eco91I GGTNACC 1 cut(s) 274
EcoICRI GAGCTC 1 cut(s) 142
EcoO109I RGGNCCY 1 cut(s) 126
EcoO65I GGTNACC 1 cut(s) 274
EcoRII CCWGG 2 cut(s) 55, 176
EcoT14I CCWWGG 2 cut(s) 233, 1156
EcoT22I ATGCAT 1 cut(s) 432
EcoT38I GRGCYC 1 cut(s) 144
EgeI GGCGCC 1 cut(s) 1051
EheI GGCGCC 1 cut(s) 1051
ErhI CCWWGG 2 cut(s) 233, 1156
Esp3I CGTCTC 1 cut(s) 1227
FaeI CATG 9 cut(s) 342, 434, 493, 522, 680, 700, 1003, 1130, 1138
FaqI GGGAC 2 cut(s) 251, 300
FatI CATG 9 cut(s) 338, 430, 489, 518, 676, 696, 999, 1126, 1134
FauNDI CATATG 1 cut(s) 633
FbaI TGATCA 1 cut(s) 628
Fnu4HI GCNGC 5 cut(s) 53, 198, 399, 960, 1033
FokI GGATG 9 cut(s) 17, 53, 57, 313, 436, 742, 931, 989, 991
FriOI GRGCYC 1 cut(s) 144
Fsp4HI GCNGC 5 cut(s) 53, 198, 399, 960, 1033
FspAI RTGCGCAY 1 cut(s) 564
FspBI CTAG 3 cut(s) 782, 912, 935
FspI TGCGCA 1 cut(s) 564
GlaI GCGC 2 cut(s) 564, 1051
GluI GCNGC 5 cut(s) 53, 198, 399, 960, 1033
GsaI CCCAGC 1 cut(s) 1185
HaeII RGCGCY 1 cut(s) 1053
HaeIII GGCC 2 cut(s) 127, 265
HapII CCGG 3 cut(s) 279, 285, 948
HhaI GCGC 2 cut(s) 565, 1052
Hin1I GRCGYC 1 cut(s) 1050
Hin1II CATG 9 cut(s) 342, 434, 493, 522, 680, 700, 1003, 1130, 1138
Hin6I GCGC 2 cut(s) 563, 1050
HinP1I GCGC 2 cut(s) 563, 1050
HinfI GANTC 3 cut(s) 288, 458, 515
HpaII CCGG 3 cut(s) 279, 285, 948
HphI GGTGA 3 cut(s) 474, 638, 921
Hpy166II GTNNAC 4 cut(s) 443, 653, 814, 1210
Hpy188I TCNGA 2 cut(s) 331, 691
Hpy188III TCNNGA 7 cut(s) 106, 292, 677, 782, 935, 948, 1127
Hpy8I GTNNAC 4 cut(s) 443, 653, 814, 1210
HpyAV CCTTC 4 cut(s) 106, 205, 326, 456
HpyCH4III ACNGT 4 cut(s) 230, 314, 486, 1245
HpyCH4IV ACGT 2 cut(s) 1041, 1218
HpyCH4V TGCA 9 cut(s) 338, 430, 509, 531, 653, 834, 969, 1058, 1138
HpyF10VI GCNNNNNNNGC 1 cut(s) 148
HpySE526I ACGT 2 cut(s) 1041, 1218
Hsp92I GRCGYC 1 cut(s) 1050
Hsp92II CATG 9 cut(s) 342, 434, 493, 522, 680, 700, 1003, 1130, 1138
HspAI GCGC 2 cut(s) 563, 1050
KasI GGCGCC 1 cut(s) 1049
Kpn2I TCCGGA 1 cut(s) 947
Ksp22I TGATCA 1 cut(s) 628
Kzo9I GATC 7 cut(s) 181, 476, 628, 887, 1237, 1260, 1264
LguI GCTCTTC 1 cut(s) 388
LmnI GCTCC 3 cut(s) 85, 281, 647
Lsp1109I GCAGC 4 cut(s) 39, 209, 385, 1044
LweI GCATC 3 cut(s) 39, 417, 1002
MaeI CTAG 3 cut(s) 782, 912, 935
MaeII ACGT 2 cut(s) 1041, 1218
MaeIII GTNAC 2 cut(s) 274, 1219
MalI GATC 7 cut(s) 183, 478, 630, 889, 1239, 1262, 1266
MboI GATC 7 cut(s) 181, 476, 628, 887, 1237, 1260, 1264
MboII GAAGA 4 cut(s) 176, 379, 405, 1238
MflI RGATCY 1 cut(s) 181
MhlI GDGCHC 3 cut(s) 144, 655, 984
MluCI AATT 4 cut(s) 167, 550, 874, 1069
Mly113I GGCGCC 1 cut(s) 1050
MmeI TCCRAC 1 cut(s) 98
Mph1103I ATGCAT 1 cut(s) 432
MroI TCCGGA 1 cut(s) 947
MseI TTAA 4 cut(s) 540, 795, 995, 1191
MslI CAYNNNNRTG 1 cut(s) 1125
MspA1I CMGCKG 1 cut(s) 959
MspI CCGG 3 cut(s) 279, 285, 948
MspR9I CCNGG 2 cut(s) 57, 178
MvaI CCWGG 2 cut(s) 57, 178
MwoI GCNNNNNNNGC 1 cut(s) 148
NarI GGCGCC 1 cut(s) 1050
NdeI CATATG 1 cut(s) 633
NdeII GATC 7 cut(s) 181, 476, 628, 887, 1237, 1260, 1264
NlaIII CATG 9 cut(s) 342, 434, 493, 522, 680, 700, 1003, 1130, 1138
NlaIV GGNNCC 5 cut(s) 128, 283, 307, 643, 1051
NmuCI GTSAC 1 cut(s) 1219
NsbI TGCGCA 1 cut(s) 564
NsiI ATGCAT 1 cut(s) 432
NspI RCATGY 3 cut(s) 342, 700, 1003
PagI TCATGA 2 cut(s) 676, 1126
PasI CCCWGGG 1 cut(s) 177
PceI AGGCCT 1 cut(s) 265
PciI ACATGT 1 cut(s) 999
PciSI GCTCTTC 1 cut(s) 388
PfeI GAWTC 3 cut(s) 288, 458, 515
PkrI GCNGC 5 cut(s) 54, 199, 400, 961, 1034
Ple19I CGATCG 2 cut(s) 1240, 1263
PluTI GGCGCC 1 cut(s) 1053
PscI ACATGT 1 cut(s) 999
Psp124BI GAGCTC 1 cut(s) 144
Psp6I CCWGG 2 cut(s) 55, 176
PspEI GGTNACC 1 cut(s) 274
PspFI CCCAGC 1 cut(s) 1181
PspGI CCWGG 2 cut(s) 55, 176
PspN4I GGNNCC 5 cut(s) 128, 283, 307, 643, 1051
PspPI GGNCC 1 cut(s) 126
PstI CTGCAG 1 cut(s) 1060
PstNI CAGNNNCTG 1 cut(s) 203
PsuI RGATCY 1 cut(s) 181
PvuI CGATCG 2 cut(s) 1240, 1263
RsaI GTAC 4 cut(s) 857, 899, 1066, 1084
RsaNI GTAC 4 cut(s) 856, 898, 1065, 1083
RseI CAYNNNNRTG 1 cut(s) 1125
SacI GAGCTC 1 cut(s) 144
SapI GCTCTTC 1 cut(s) 388
SaqAI TTAA 4 cut(s) 540, 795, 995, 1191
SatI GCNGC 5 cut(s) 53, 198, 399, 960, 1033
Sau3AI GATC 7 cut(s) 181, 476, 628, 887, 1237, 1260, 1264
Sau96I GGNCC 1 cut(s) 126
ScaI AGTACT 3 cut(s) 857, 1066, 1084
ScrFI CCNGG 2 cut(s) 57, 178
SduI GDGCHC 3 cut(s) 144, 655, 984
SfaNI GCATC 3 cut(s) 39, 417, 1002
SfcI CTRYAG 1 cut(s) 1056
SfoI GGCGCC 1 cut(s) 1051
SmiMI CAYNNNNRTG 1 cut(s) 1125
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
Sse9I AATT 4 cut(s) 167, 550, 874, 1069
SseBI AGGCCT 1 cut(s) 265
SsiI CCGC 2 cut(s) 959, 974
SspDI GGCGCC 1 cut(s) 1049
SspI AATATT 2 cut(s) 22, 1272
SspMI CTAG 3 cut(s) 782, 912, 935
SstI GAGCTC 1 cut(s) 144
StuI AGGCCT 1 cut(s) 265
StyD4I CCNGG 2 cut(s) 55, 176
StyI CCWWGG 2 cut(s) 233, 1156
TaaI ACNGT 4 cut(s) 230, 314, 486, 1245
TaiI ACGT 2 cut(s) 1044, 1221
TaqI TCGA 5 cut(s) 156, 1010, 1214, 1240, 1263
TasI AATT 4 cut(s) 167, 550, 874, 1069
TatI WGTACW 3 cut(s) 855, 1064, 1082
TauI GCSGC 1 cut(s) 962
TfiI GAWTC 3 cut(s) 288, 458, 515
Tru1I TTAA 4 cut(s) 540, 795, 995, 1191
Tru9I TTAA 4 cut(s) 540, 795, 995, 1191
TscAI CASTG 2 cut(s) 889, 1250
TseFI GTSAC 1 cut(s) 1219
TseI GCWGC 4 cut(s) 52, 197, 398, 1032
Tsp45I GTSAC 1 cut(s) 1219
TspDTI ATGAA 5 cut(s) 57, 59, 478, 507, 933
TspGWI ACGGA 1 cut(s) 470
TspRI CASTG 2 cut(s) 889, 1250
VneI GTGCAC 1 cut(s) 651
XapI RAATTY 2 cut(s) 167, 550
XbaI TCTAGA 2 cut(s) 781, 934
XceI RCATGY 3 cut(s) 342, 700, 1003
XspI CTAG 3 cut(s) 782, 912, 935
ZrmI AGTACT 3 cut(s) 857, 1066, 1084
Zsp2I ATGCAT 1 cut(s) 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.