FvH4_4g31470

Domain of unknown function (DUF383)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0013408
Physical Location & Seq
Reverse (-)
30589965 .. 30593702
3738 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g31470.t2

Sequence Viewer

Length: 1011 bp
ATGGCGACGGAACTCGAAGAACTAGTGGGATTTCTATCGTCTCCATCTCCAAACTTGACAAAGGCAGCTGTTGATATTGTTCATGGATTAACCGGGTCCGAAGATGGCTTGAAGTCTCTAGCCAAGCATGCAGATATCCTGCTGCCACCATTATCTCGACTCCTAGCTGGAAAAAAGGAGGTATCGGAACCTGCAGCAGTAGCTCTTGTTAATCTTTCCCAAAGGTCGGCTGTGGCAGCAAAGATGGTTGACATAGGAATGATTAACCTGGCTATGGACCTTTTATTTAAGTCAGAGCCTAATATTAGCCGGTTGCTGGTAATGCTTTTAGTCAATCTCACCCAATTAGAAAGTGGTACTGCTTCGTTACTGCAGACCGGAGATGAGAAAATGCAAGGGCTCTATGTTATGAAGCTTGTGAGATCATTCTGTAGATCCTCTTCCGGTGAAGATAACGATCCATTTGAGCATGTTGGGTCTATCCTTGTGAACATCTCAAAGAAAGAAGCAGGCAGAAAACTTTTGCTGGACCCTAAGCGCGGCCTTCTGAAACAGATTATAAGACAGTATGACTCTTCTAGCCCATTGAGAAGGAAAGGGGTTTCTGGAACTATTCGTAACTGTTGTTTTGAAGCTGAGAGCGAGCTTCAGAATTTACTATTAATTTCAGAGTTTCTCTGGCCAGCTCTGCTTCTGCCTGTTGCTGGTAACAAGATTTACAGTCAGCAAGATAGATCGAAAATGCCACTTGAGCTTAGTAGTGCTCTCTCAATTGAGCGTGAACCAGTTGATGATCCTGAAATTCGTGCTGAAGCCCTGGAGGCAATATACATGATAACATTACAGGAGGCAGGTCTAAGAGCCTTTTGGTCTGTCAATGGACCAAGAATAATACAAGTGGGTTATGAAGACGAGGAAGATCCTAAAGTCATGGAAGCATACGAACAACTTGGCTCCTTGTTGATTAATAGCAGCGGGACAGAGGAGCCGGCAATTGAGACATCTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF383 DUF384

Protein Analysis

337

Amino Acids

36.76

Weight (kDa)

4.94

Isoelectric Point (pI)

60.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF383 PF04063 98 - 270 3e-38 Domain of unknown function (DUF383)
DUF384 PF04064 276 - 328 9.7e-11 Domain of unknown function (DUF384)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013408)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14300 AT1G14300
fragaria_vesca FvH4_4g31470 FvH4_4g31470
malus_domestica MD16G1074200.v1.1
pyrus_communis pycom16g06420
rosa_chinensis RchiOBHm_Chr4g0439961
rosa_laevigata RLG00000006220
rosa_multiflora Rmu_sc0006000.1_g000004 Rmu_sc0023432.1_g000002
rosa_roxburghii Rroxscaffold_5G00380910
rosa_rugosa Rorug04G0322700
rosa_samantha Rh4AG373800 Rh4BG386100 Rh4CG377200 Rh4CG400600 Rh4DG380400
rosa_wichuraiana Rw4G031970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 560
Acc36I ACCTGC 2 cut(s) 199, 842
AccII CGCG 1 cut(s) 540
AciI CCGC 2 cut(s) 540, 975
AclWI GGATC 4 cut(s) 429, 452, 788, 914
AcoI YGGCCR 1 cut(s) 680
AcsI RAATTY 2 cut(s) 652, 801
AcuI CTGAAG 2 cut(s) 632, 831
AfaI GTAC 1 cut(s) 358
AfiI CCNNNNNNNGG 5 cut(s) 226, 274, 316, 539, 704
AgsI TTSAA 2 cut(s) 112, 632
AhlI ACTAGT 1 cut(s) 22
AjnI CCWGG 2 cut(s) 267, 816
AluBI AGCT 8 cut(s) 68, 167, 203, 415, 635, 646, 686, 754
AluI AGCT 8 cut(s) 68, 167, 203, 415, 635, 646, 686, 754
Alw21I GWGCWC 1 cut(s) 766
Alw26I GTCTC 3 cut(s) 45, 120, 992
AlwI GGATC 4 cut(s) 429, 452, 788, 914
AoxI GGCC 2 cut(s) 541, 680
ApeKI GCWGC 5 cut(s) 65, 142, 194, 236, 972
ApoI RAATTY 2 cut(s) 652, 801
AseI ATTAAT 2 cut(s) 662, 966
AspLEI GCGC 1 cut(s) 540
AspS9I GGNCC 4 cut(s) 96, 277, 529, 881
AsuC2I CCSGG 1 cut(s) 94
AsuHPI GGTGA 2 cut(s) 331, 458
AvaII GGWCC 4 cut(s) 96, 277, 529, 881
BalI TGGCCA 1 cut(s) 682
BanII GRGCYC 1 cut(s) 402
BarI GAAGNNNNNNTAC 2 cut(s) 424, 456
BbsI GAAGAC 1 cut(s) 915
Bbv12I GWGCWC 1 cut(s) 766
BbvI GCAGC 5 cut(s) 77, 129, 206, 248, 984
BccI CCATC 3 cut(s) 52, 98, 238
BciT130I CCWGG 2 cut(s) 269, 818
BcnI CCSGG 1 cut(s) 94
BcoDI GTCTC 3 cut(s) 45, 120, 992
BcuI ACTAGT 1 cut(s) 22
BfaI CTAG 4 cut(s) 23, 119, 164, 579
BfmI CTRYAG 3 cut(s) 192, 371, 430
BfuAI ACCTGC 2 cut(s) 199, 842
BglI GCCNNNNNGGC 1 cut(s) 821
BisI GCNGC 6 cut(s) 66, 143, 195, 237, 541, 973
BlsI GCNGC 6 cut(s) 67, 144, 196, 238, 542, 974
Bme1390I CCNGG 3 cut(s) 94, 269, 818
Bme18I GGWCC 4 cut(s) 96, 277, 529, 881
BmgT120I GGNCC 4 cut(s) 96, 277, 529, 881
BmiI GGNNCC 5 cut(s) 97, 189, 531, 955, 987
BmrFI CCNGG 3 cut(s) 94, 269, 818
BpiI GAAGAC 1 cut(s) 915
BpmI CTGGAG 1 cut(s) 839
Bpu10I CCTNAGC 1 cut(s) 534
BpuEI CTTGAG 1 cut(s) 770
BpuMI CCSGG 1 cut(s) 94
BsaBI GATNNNNATC 2 cut(s) 34, 456
BsaJI CCNNGG 1 cut(s) 816
BsaWI WCCGGW 2 cut(s) 377, 443
Bsc4I CCNNNNNNNGG 5 cut(s) 226, 274, 316, 539, 704
Bse118I RCCGGY 2 cut(s) 309, 988
Bse1I ACTGG 1 cut(s) 785
Bse8I GATNNNNATC 2 cut(s) 34, 456
BseBI CCWGG 2 cut(s) 269, 818
BseDI CCNNGG 1 cut(s) 816
BseJI GATNNNNATC 2 cut(s) 34, 456
BseLI CCNNNNNNNGG 5 cut(s) 226, 274, 316, 539, 704
BseMII CTCAG 1 cut(s) 627
BseNI ACTGG 1 cut(s) 785
BseRI GAGGAG 1 cut(s) 998
BseXI GCAGC 5 cut(s) 77, 129, 206, 248, 984
Bsh1236I CGCG 1 cut(s) 540
BshFI GGCC 2 cut(s) 543, 682
BsiHKAI GWGCWC 1 cut(s) 766
BsiSI CCGG 5 cut(s) 93, 310, 378, 444, 989
BslFI GGGAC 1 cut(s) 991
BslI CCNNNNNNNGG 5 cut(s) 226, 274, 316, 539, 704
BsmAI GTCTC 3 cut(s) 45, 120, 992
BsmBI CGTCTC 1 cut(s) 45
BsmFI GGGAC 1 cut(s) 991
BsnI GGCC 2 cut(s) 543, 682
Bsp1286I GDGCHC 2 cut(s) 402, 766
Bsp143I GATC 6 cut(s) 422, 434, 457, 734, 793, 919
BspACI CCGC 2 cut(s) 540, 975
BspANI GGCC 2 cut(s) 543, 682
BspCNI CTCAG 1 cut(s) 628
BspFNI CGCG 1 cut(s) 540
BspLI GGNNCC 5 cut(s) 97, 189, 531, 955, 987
BspMAI CTGCAG 2 cut(s) 196, 375
BspMI ACCTGC 2 cut(s) 199, 842
BspPI GGATC 4 cut(s) 429, 452, 788, 914
BsrFI RCCGGY 2 cut(s) 309, 988
BsrI ACTGG 1 cut(s) 785
BssAI RCCGGY 2 cut(s) 309, 988
BssECI CCNNGG 1 cut(s) 816
BssMI GATC 6 cut(s) 422, 434, 457, 734, 793, 919
Bst2UI CCWGG 2 cut(s) 269, 818
Bst4CI ACNGT 3 cut(s) 567, 623, 722
Bst6I CTCTTC 2 cut(s) 445, 580
BstC8I GCNNGC 5 cut(s) 129, 511, 644, 684, 990
BstDEI CTNAG 4 cut(s) 534, 636, 755, 857
BstFNI CGCG 1 cut(s) 540
BstHHI GCGC 1 cut(s) 540
BstKTI GATC 6 cut(s) 425, 437, 460, 737, 796, 922
BstMAI GTCTC 3 cut(s) 45, 120, 992
BstMBI GATC 6 cut(s) 422, 434, 457, 734, 793, 919
BstMWI GCNNNNNNNGC 7 cut(s) 128, 200, 236, 322, 688, 751, 821
BstNI CCWGG 2 cut(s) 269, 818
BstNSI RCATGY 2 cut(s) 131, 473
BstSCI CCNGG 3 cut(s) 92, 267, 816
BstSFI CTRYAG 3 cut(s) 192, 371, 430
BstUI CGCG 1 cut(s) 540
BstV1I GCAGC 5 cut(s) 77, 129, 206, 248, 984
BstV2I GAAGAC 1 cut(s) 915
BstX2I RGATCY 2 cut(s) 434, 919
BstYI RGATCY 2 cut(s) 434, 919
BsuRI GGCC 2 cut(s) 543, 682
BveI ACCTGC 2 cut(s) 199, 842
Cac8I GCNNGC 5 cut(s) 129, 511, 644, 684, 990
CfoI GCGC 1 cut(s) 540
Cfr10I RCCGGY 2 cut(s) 309, 988
Cfr13I GGNCC 4 cut(s) 96, 277, 529, 881
Csp6I GTAC 1 cut(s) 357
CviAII CATG 5 cut(s) 83, 128, 470, 832, 931
CviQI GTAC 1 cut(s) 357
DdeI CTNAG 4 cut(s) 534, 636, 755, 857
DpnI GATC 6 cut(s) 424, 436, 459, 736, 795, 921
DpnII GATC 6 cut(s) 422, 434, 457, 734, 793, 919
EaeI YGGCCR 1 cut(s) 680
Eam1104I CTCTTC 2 cut(s) 445, 580
EarI CTCTTC 2 cut(s) 445, 580
Eco24I GRGCYC 1 cut(s) 402
Eco32I GATATC 1 cut(s) 136
Eco47I GGWCC 4 cut(s) 96, 277, 529, 881
Eco57I CTGAAG 2 cut(s) 632, 831
EcoRII CCWGG 2 cut(s) 267, 816
EcoRV GATATC 1 cut(s) 136
EcoT38I GRGCYC 1 cut(s) 402
Esp3I CGTCTC 1 cut(s) 45
FaeI CATG 5 cut(s) 86, 131, 473, 835, 934
FaqI GGGAC 1 cut(s) 991
FatI CATG 5 cut(s) 82, 127, 469, 831, 930
FauI CCCGC 1 cut(s) 968
Fnu4HI GCNGC 6 cut(s) 66, 143, 195, 237, 541, 973
FriOI GRGCYC 1 cut(s) 402
Fsp4HI GCNGC 6 cut(s) 66, 143, 195, 237, 541, 973
FspBI CTAG 4 cut(s) 23, 119, 164, 579
GlaI GCGC 1 cut(s) 539
GluI GCNGC 6 cut(s) 66, 143, 195, 237, 541, 973
GsuI CTGGAG 1 cut(s) 839
HaeIII GGCC 2 cut(s) 543, 682
HapII CCGG 5 cut(s) 93, 310, 378, 444, 989
HhaI GCGC 1 cut(s) 540
Hin1II CATG 5 cut(s) 86, 131, 473, 835, 934
Hin6I GCGC 1 cut(s) 538
HinP1I GCGC 1 cut(s) 538
HincII GTYRAC 1 cut(s) 250
HindII GTYRAC 1 cut(s) 250
HindIII AAGCTT 1 cut(s) 413
HinfI GANTC 2 cut(s) 159, 572
HpaII CCGG 5 cut(s) 93, 310, 378, 444, 989
HphI GGTGA 2 cut(s) 331, 458
Hpy166II GTNNAC 3 cut(s) 250, 490, 782
Hpy188I TCNGA 6 cut(s) 100, 187, 295, 549, 651, 670
Hpy188III TCNNGA 3 cut(s) 156, 606, 797
Hpy8I GTNNAC 3 cut(s) 250, 490, 782
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 2 cut(s) 554, 585
HpyCH4III ACNGT 3 cut(s) 567, 623, 722
HpyCH4V TGCA 4 cut(s) 131, 194, 373, 394
HpyF10VI GCNNNNNNNGC 7 cut(s) 128, 200, 236, 322, 688, 751, 821
HpyF3I CTNAG 4 cut(s) 534, 636, 755, 857
Hsp92II CATG 5 cut(s) 86, 131, 473, 835, 934
HspAI GCGC 1 cut(s) 538
KroI GCCGGC 1 cut(s) 988
KroNI GCCGGC 1 cut(s) 990
Kzo9I GATC 6 cut(s) 422, 434, 457, 734, 793, 919
LmnI GCTCC 2 cut(s) 959, 985
Lsp1109I GCAGC 5 cut(s) 77, 129, 206, 248, 984
MaeI CTAG 4 cut(s) 23, 119, 164, 579
MaeIII GTNAC 3 cut(s) 366, 617, 707
MalI GATC 6 cut(s) 424, 436, 459, 736, 795, 921
MboI GATC 6 cut(s) 422, 434, 457, 734, 793, 919
MboII GAAGA 7 cut(s) 29, 113, 432, 461, 567, 920, 929
MfeI CAATTG 2 cut(s) 771, 993
MflI RGATCY 2 cut(s) 434, 919
MhlI GDGCHC 2 cut(s) 402, 766
MlsI TGGCCA 1 cut(s) 682
MluCI AATT 7 cut(s) 344, 652, 663, 771, 801, 993, 1006
MluNI TGGCCA 1 cut(s) 682
MlyI GAGTC 2 cut(s) 153, 566
MnlI CCTC 6 cut(s) 172, 448, 814, 841, 907, 976
Mox20I TGGCCA 1 cut(s) 682
MroNI GCCGGC 1 cut(s) 988
MscI TGGCCA 1 cut(s) 682
MseI TTAA 6 cut(s) 89, 210, 264, 288, 662, 966
MslI CAYNNNNRTG 1 cut(s) 257
Msp20I TGGCCA 1 cut(s) 682
MspA1I CMGCKG 2 cut(s) 68, 975
MspI CCGG 5 cut(s) 93, 310, 378, 444, 989
MspR9I CCNGG 3 cut(s) 94, 269, 818
MunI CAATTG 2 cut(s) 771, 993
MvaI CCWGG 2 cut(s) 269, 818
MvnI CGCG 1 cut(s) 540
MwoI GCNNNNNNNGC 7 cut(s) 128, 200, 236, 322, 688, 751, 821
NaeI GCCGGC 1 cut(s) 990
NciI CCSGG 1 cut(s) 94
NdeII GATC 6 cut(s) 422, 434, 457, 734, 793, 919
NgoMIV GCCGGC 1 cut(s) 988
NlaIII CATG 5 cut(s) 86, 131, 473, 835, 934
NlaIV GGNNCC 5 cut(s) 97, 189, 531, 955, 987
NspI RCATGY 2 cut(s) 131, 473
PaeI GCATGC 1 cut(s) 131
PdiI GCCGGC 1 cut(s) 990
PkrI GCNGC 6 cut(s) 67, 144, 196, 238, 542, 974
PleI GAGTC 2 cut(s) 153, 566
PpsI GAGTC 2 cut(s) 153, 566
PshBI ATTAAT 2 cut(s) 662, 966
PsiI TTATAA 1 cut(s) 560
Psp6I CCWGG 2 cut(s) 267, 816
PspGI CCWGG 2 cut(s) 267, 816
PspN4I GGNNCC 5 cut(s) 97, 189, 531, 955, 987
PspPI GGNCC 4 cut(s) 96, 277, 529, 881
PstI CTGCAG 2 cut(s) 196, 375
PsuI RGATCY 2 cut(s) 434, 919
PvuII CAGCTG 1 cut(s) 68
RsaI GTAC 1 cut(s) 358
RsaNI GTAC 1 cut(s) 357
RseI CAYNNNNRTG 1 cut(s) 257
SaqAI TTAA 6 cut(s) 89, 210, 264, 288, 662, 966
SatI GCNGC 6 cut(s) 66, 143, 195, 237, 541, 973
Sau3AI GATC 6 cut(s) 422, 434, 457, 734, 793, 919
Sau96I GGNCC 4 cut(s) 96, 277, 529, 881
SchI GAGTC 2 cut(s) 153, 566
ScrFI CCNGG 3 cut(s) 94, 269, 818
SduI GDGCHC 2 cut(s) 402, 766
SfcI CTRYAG 3 cut(s) 192, 371, 430
SinI GGWCC 4 cut(s) 96, 277, 529, 881
SmiMI CAYNNNNRTG 1 cut(s) 257
SmlI CTYRAG 1 cut(s) 749
SmoI CTYRAG 1 cut(s) 749
SpeI ACTAGT 1 cut(s) 22
SphI GCATGC 1 cut(s) 131
Sse9I AATT 7 cut(s) 344, 652, 663, 771, 801, 993, 1006
SsiI CCGC 2 cut(s) 540, 975
SspI AATATT 1 cut(s) 304
SspMI CTAG 4 cut(s) 23, 119, 164, 579
StyD4I CCNGG 3 cut(s) 92, 267, 816
TaaI ACNGT 3 cut(s) 567, 623, 722
TaqI TCGA 3 cut(s) 15, 157, 737
TasI AATT 7 cut(s) 344, 652, 663, 771, 801, 993, 1006
TauI GCSGC 1 cut(s) 543
Tru1I TTAA 6 cut(s) 89, 210, 264, 288, 662, 966
Tru9I TTAA 6 cut(s) 89, 210, 264, 288, 662, 966
TseI GCWGC 5 cut(s) 65, 142, 194, 236, 972
TspDTI ATGAA 3 cut(s) 71, 425, 921
TspGWI ACGGA 1 cut(s) 23
VpaK11BI GGWCC 4 cut(s) 96, 277, 529, 881
VspI ATTAAT 2 cut(s) 662, 966
XapI RAATTY 2 cut(s) 652, 801
XceI RCATGY 2 cut(s) 131, 473
XcmI CCANNNNNNNNNTGG 1 cut(s) 350
XspI CTAG 4 cut(s) 23, 119, 164, 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.