Rh4CG400600

Domain of unknown function (DUF383)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0013408
Physical Location & Seq
Reverse (-)
64921421 .. 64925254
3834 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG400600.1

Sequence Viewer

Length: 726 bp
ATGGCGACGGAACTCGAAGAACTAGTGGGATTTCTATCTTCCCCATCTCCAAATTTGACAAAGGCAGCTGTTGATATTGTTCATGGATTAACCGGGTCCGAAGATGGCTTGAAGTCCCTAGCCAATCATGCAGAGATTCTGCTGCCGTCATTATCGCGGCTCTTAGCCGGAAAGAAGGAGGTCTCGGAACCTGCAGCAGTAGCTCTTGTTAATCTTTCCCAGAGGTCGGCTGTAGCAGCAAAGATGGTTGATATGGGAATGATTAACCTGGCTATGGACCTTTTATTTAAGTCAGAACCTAATATAAGCCGGTTGCTGGTAATGCTTTTAGTTAATCTCACGCAATTAGAAAGTGGGACTGCCTCTTTACTGCAGACTGGAGATGAGAAAATGCAAGGGCTCTATGTTATGAAGCTTGTGAGATCATTTTGTAGATCCTCCTCCAGTGAAGATAGCGAAGATCCATTTGAACATGTTGGGTCTATACTTGTGAACATCTCAAAGAAAGAAGCAGGCAGGAAACTTTTACTGGACCCTAAGCGAGGACTTCTGAAGCAGATTATTAGACAGTATGACTCTTCTAGCCCGTTGAGAAGGAAAGGGGTTTCTGGAACTATTCGTAACTGTTGTTTTGAAGCTGCGAGCGAGCTTCAGAATTTGCTTTTGATTTCAGAGTTTCTCTGGCCAGCTCTGCTTCTGCCTGTTGCTGGTAACAAGGTAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF383 DUF384

Protein Analysis

241

Amino Acids

26.14

Weight (kDa)

7.71

Isoelectric Point (pI)

61.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF383 PF04063 98 - 239 1.1e-30 Domain of unknown function (DUF383)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013408)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14300 AT1G14300
fragaria_vesca FvH4_4g31470 FvH4_4g31470
malus_domestica MD16G1074200.v1.1
pyrus_communis pycom16g06420
rosa_chinensis RchiOBHm_Chr4g0439961
rosa_laevigata RLG00000006220
rosa_multiflora Rmu_sc0006000.1_g000004 Rmu_sc0023432.1_g000002
rosa_roxburghii Rroxscaffold_5G00380910
rosa_rugosa Rorug04G0322700
rosa_samantha Rh4AG373800 Rh4BG386100 Rh4CG377200 Rh4CG400600 Rh4DG380400
rosa_wichuraiana Rw4G031970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 199
AccII CGCG 1 cut(s) 157
AciI CCGC 1 cut(s) 157
AclWI GGATC 2 cut(s) 429, 455
AcoI YGGCCR 1 cut(s) 683
AcsI RAATTY 2 cut(s) 52, 655
AcuI CTGAAG 2 cut(s) 572, 635
AfiI CCNNNNNNNGG 5 cut(s) 226, 274, 316, 542, 707
AflIII ACRYGT 1 cut(s) 472
AgsI TTSAA 3 cut(s) 112, 470, 635
AhlI ACTAGT 1 cut(s) 22
AjnI CCWGG 1 cut(s) 267
AluBI AGCT 6 cut(s) 68, 203, 415, 638, 649, 689
AluI AGCT 6 cut(s) 68, 203, 415, 638, 649, 689
Alw26I GTCTC 1 cut(s) 187
AlwI GGATC 2 cut(s) 429, 455
AoxI GGCC 1 cut(s) 683
ApeKI GCWGC 5 cut(s) 65, 142, 194, 236, 638
ApoI RAATTY 2 cut(s) 52, 655
AspS9I GGNCC 3 cut(s) 96, 277, 532
AsuC2I CCSGG 1 cut(s) 94
AvaII GGWCC 3 cut(s) 96, 277, 532
BalI TGGCCA 1 cut(s) 685
BanII GRGCYC 1 cut(s) 402
BbvI GCAGC 5 cut(s) 77, 129, 206, 248, 625
BccI CCATC 3 cut(s) 52, 98, 238
BceAI ACGGC 1 cut(s) 130
BciT130I CCWGG 1 cut(s) 269
BcnI CCSGG 1 cut(s) 94
BcoDI GTCTC 1 cut(s) 187
BcuI ACTAGT 1 cut(s) 22
BfaI CTAG 3 cut(s) 23, 119, 582
BfmI CTRYAG 3 cut(s) 192, 231, 371
BfuAI ACCTGC 1 cut(s) 199
BisI GCNGC 6 cut(s) 66, 143, 158, 195, 237, 639
BlsI GCNGC 6 cut(s) 67, 144, 159, 196, 238, 640
Bme1390I CCNGG 2 cut(s) 94, 269
Bme18I GGWCC 3 cut(s) 96, 277, 532
BmgT120I GGNCC 3 cut(s) 96, 277, 532
BmiI GGNNCC 3 cut(s) 97, 189, 534
BmrFI CCNGG 2 cut(s) 94, 269
BpmI CTGGAG 2 cut(s) 399, 427
Bpu10I CCTNAGC 1 cut(s) 537
BpuMI CCSGG 1 cut(s) 94
BsaBI GATNNNNATC 1 cut(s) 34
BsaI GGTCTC 1 cut(s) 187
Bsc4I CCNNNNNNNGG 5 cut(s) 226, 274, 316, 542, 707
Bse118I RCCGGY 1 cut(s) 309
Bse1I ACTGG 3 cut(s) 382, 444, 534
Bse8I GATNNNNATC 1 cut(s) 34
BseBI CCWGG 1 cut(s) 269
BseJI GATNNNNATC 1 cut(s) 34
BseLI CCNNNNNNNGG 5 cut(s) 226, 274, 316, 542, 707
BseNI ACTGG 3 cut(s) 382, 444, 534
BseRI GAGGAG 1 cut(s) 430
BseXI GCAGC 5 cut(s) 77, 129, 206, 248, 625
Bsh1236I CGCG 1 cut(s) 157
BshFI GGCC 1 cut(s) 685
BsiSI CCGG 3 cut(s) 93, 168, 310
BslFI GGGAC 2 cut(s) 100, 370
BslI CCNNNNNNNGG 5 cut(s) 226, 274, 316, 542, 707
BsmAI GTCTC 1 cut(s) 187
BsmFI GGGAC 2 cut(s) 100, 370
BsnI GGCC 1 cut(s) 685
Bso31I GGTCTC 1 cut(s) 187
Bsp1286I GDGCHC 1 cut(s) 402
Bsp143I GATC 3 cut(s) 422, 434, 460
BspACI CCGC 1 cut(s) 157
BspANI GGCC 1 cut(s) 685
BspFNI CGCG 1 cut(s) 157
BspLI GGNNCC 3 cut(s) 97, 189, 534
BspMAI CTGCAG 2 cut(s) 196, 375
BspMI ACCTGC 1 cut(s) 199
BspPI GGATC 2 cut(s) 429, 455
BspTNI GGTCTC 1 cut(s) 187
BsrFI RCCGGY 1 cut(s) 309
BsrI ACTGG 3 cut(s) 382, 444, 534
BssAI RCCGGY 1 cut(s) 309
BssMI GATC 3 cut(s) 422, 434, 460
Bst2UI CCWGG 1 cut(s) 269
Bst4CI ACNGT 2 cut(s) 570, 626
Bst6I CTCTTC 1 cut(s) 583
BstC8I GCNNGC 4 cut(s) 514, 643, 647, 687
BstDEI CTNAG 2 cut(s) 163, 537
BstENI CCTNNNNNAGG 1 cut(s) 540
BstFNI CGCG 1 cut(s) 157
BstKTI GATC 3 cut(s) 425, 437, 463
BstMAI GTCTC 1 cut(s) 187
BstMBI GATC 3 cut(s) 422, 434, 460
BstMWI GCNNNNNNNGC 5 cut(s) 128, 200, 236, 322, 691
BstNI CCWGG 1 cut(s) 269
BstNSI RCATGY 1 cut(s) 476
BstSCI CCNGG 2 cut(s) 92, 267
BstSFI CTRYAG 3 cut(s) 192, 231, 371
BstUI CGCG 1 cut(s) 157
BstV1I GCAGC 5 cut(s) 77, 129, 206, 248, 625
BstX2I RGATCY 2 cut(s) 434, 460
BstYI RGATCY 2 cut(s) 434, 460
BsuRI GGCC 1 cut(s) 685
BtsIMutI CAGTG 1 cut(s) 451
BveI ACCTGC 1 cut(s) 199
Cac8I GCNNGC 4 cut(s) 514, 643, 647, 687
Cfr10I RCCGGY 1 cut(s) 309
Cfr13I GGNCC 3 cut(s) 96, 277, 532
CviAII CATG 3 cut(s) 83, 128, 473
DdeI CTNAG 2 cut(s) 163, 537
DpnI GATC 3 cut(s) 424, 436, 462
DpnII GATC 3 cut(s) 422, 434, 460
EaeI YGGCCR 1 cut(s) 683
Eam1104I CTCTTC 1 cut(s) 583
EarI CTCTTC 1 cut(s) 583
Eco24I GRGCYC 1 cut(s) 402
Eco31I GGTCTC 1 cut(s) 187
Eco47I GGWCC 3 cut(s) 96, 277, 532
Eco57I CTGAAG 2 cut(s) 572, 635
EcoNI CCTNNNNNAGG 1 cut(s) 540
EcoRII CCWGG 1 cut(s) 267
EcoT38I GRGCYC 1 cut(s) 402
FaeI CATG 3 cut(s) 86, 131, 476
FaqI GGGAC 2 cut(s) 100, 370
FatI CATG 3 cut(s) 82, 127, 472
Fnu4HI GCNGC 6 cut(s) 66, 143, 158, 195, 237, 639
FriOI GRGCYC 1 cut(s) 402
Fsp4HI GCNGC 6 cut(s) 66, 143, 158, 195, 237, 639
FspBI CTAG 3 cut(s) 23, 119, 582
GluI GCNGC 6 cut(s) 66, 143, 158, 195, 237, 639
GsuI CTGGAG 2 cut(s) 399, 427
HaeIII GGCC 1 cut(s) 685
HapII CCGG 3 cut(s) 93, 168, 310
Hin1II CATG 3 cut(s) 86, 131, 476
HindIII AAGCTT 1 cut(s) 413
HinfI GANTC 2 cut(s) 136, 575
HpaII CCGG 3 cut(s) 93, 168, 310
Hpy166II GTNNAC 1 cut(s) 493
Hpy188I TCNGA 6 cut(s) 100, 187, 295, 552, 654, 673
Hpy188III TCNNGA 1 cut(s) 609
Hpy8I GTNNAC 1 cut(s) 493
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 2 cut(s) 169, 588
HpyCH4III ACNGT 2 cut(s) 570, 626
HpyCH4V TGCA 4 cut(s) 131, 194, 373, 394
HpyF10VI GCNNNNNNNGC 5 cut(s) 128, 200, 236, 322, 691
HpyF3I CTNAG 2 cut(s) 163, 537
Hsp92II CATG 3 cut(s) 86, 131, 476
Kzo9I GATC 3 cut(s) 422, 434, 460
Lsp1109I GCAGC 5 cut(s) 77, 129, 206, 248, 625
MaeI CTAG 3 cut(s) 23, 119, 582
MaeIII GTNAC 2 cut(s) 620, 710
MalI GATC 3 cut(s) 424, 436, 462
MboI GATC 3 cut(s) 422, 434, 460
MboII GAAGA 6 cut(s) 29, 30, 113, 461, 470, 570
MflI RGATCY 2 cut(s) 434, 460
MhlI GDGCHC 1 cut(s) 402
MlsI TGGCCA 1 cut(s) 685
MluCI AATT 3 cut(s) 52, 344, 655
MluNI TGGCCA 1 cut(s) 685
MlyI GAGTC 1 cut(s) 569
MnlI CCTC 6 cut(s) 172, 216, 373, 448, 451, 536
Mox20I TGGCCA 1 cut(s) 685
MscI TGGCCA 1 cut(s) 685
MseI TTAA 5 cut(s) 89, 210, 264, 288, 333
Msp20I TGGCCA 1 cut(s) 685
MspA1I CMGCKG 1 cut(s) 68
MspI CCGG 3 cut(s) 93, 168, 310
MspR9I CCNGG 2 cut(s) 94, 269
MvaI CCWGG 1 cut(s) 269
MvnI CGCG 1 cut(s) 157
MwoI GCNNNNNNNGC 5 cut(s) 128, 200, 236, 322, 691
NciI CCSGG 1 cut(s) 94
NdeII GATC 3 cut(s) 422, 434, 460
NlaIII CATG 3 cut(s) 86, 131, 476
NlaIV GGNNCC 3 cut(s) 97, 189, 534
NspI RCATGY 1 cut(s) 476
PciI ACATGT 1 cut(s) 472
PfeI GAWTC 1 cut(s) 136
PkrI GCNGC 6 cut(s) 67, 144, 159, 196, 238, 640
PleI GAGTC 1 cut(s) 569
PpsI GAGTC 1 cut(s) 569
PscI ACATGT 1 cut(s) 472
Psp6I CCWGG 1 cut(s) 267
PspGI CCWGG 1 cut(s) 267
PspN4I GGNNCC 3 cut(s) 97, 189, 534
PspPI GGNCC 3 cut(s) 96, 277, 532
PstI CTGCAG 2 cut(s) 196, 375
PsuI RGATCY 2 cut(s) 434, 460
PvuII CAGCTG 1 cut(s) 68
SaqAI TTAA 5 cut(s) 89, 210, 264, 288, 333
SatI GCNGC 6 cut(s) 66, 143, 158, 195, 237, 639
Sau3AI GATC 3 cut(s) 422, 434, 460
Sau96I GGNCC 3 cut(s) 96, 277, 532
SchI GAGTC 1 cut(s) 569
ScrFI CCNGG 2 cut(s) 94, 269
SduI GDGCHC 1 cut(s) 402
SfcI CTRYAG 3 cut(s) 192, 231, 371
SinI GGWCC 3 cut(s) 96, 277, 532
SpeI ACTAGT 1 cut(s) 22
Sse9I AATT 3 cut(s) 52, 344, 655
SsiI CCGC 1 cut(s) 157
SspMI CTAG 3 cut(s) 23, 119, 582
StyD4I CCNGG 2 cut(s) 92, 267
TaaI ACNGT 2 cut(s) 570, 626
TaqI TCGA 1 cut(s) 15
TasI AATT 3 cut(s) 52, 344, 655
TauI GCSGC 1 cut(s) 160
TfiI GAWTC 1 cut(s) 136
Tru1I TTAA 5 cut(s) 89, 210, 264, 288, 333
Tru9I TTAA 5 cut(s) 89, 210, 264, 288, 333
TscAI CASTG 1 cut(s) 451
TseI GCWGC 5 cut(s) 65, 142, 194, 236, 638
TspDTI ATGAA 2 cut(s) 71, 425
TspGWI ACGGA 1 cut(s) 23
TspRI CASTG 1 cut(s) 451
VpaK11BI GGWCC 3 cut(s) 96, 277, 532
XagI CCTNNNNNAGG 1 cut(s) 540
XapI RAATTY 2 cut(s) 52, 655
XceI RCATGY 1 cut(s) 476
XspI CTAG 3 cut(s) 23, 119, 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.