Rh4CG377200

Domain of unknown function (DUF383)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0013408
Physical Location & Seq
Reverse (-)
63039142 .. 63040043
902 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG377200.1

Sequence Viewer

Length: 387 bp
ATGGTTGATATGGGAATGATTAACCTGGCTATGGACCTTTTATTTAAGTCAGAACCTAATATAAGCCGGTTGCTGGTAATGCTTTTAGTTAATCTCACGCAATTAGAAAGTGGTACTGCCTCTTTACTGCAGACTGGAGATGAGAAAATGCAAGGGCTCTATGTTATGAAGCTTGTGAGATCATTTTGTAGATCCTCCTCCAGTGAAGATAGCGGCTTTCTTAATGGATTCAAATTCTTCATCTATCAAGGACAGCTTACTGTGGTTTCTGGAACTATTCGTAACTGTTGTTTTGAAGCTGTGAGCGAGCTGCAGAATTTGCTTTTGATTTCAGAGTTTCTCTGGCCAGCTCTGCTTCTACCTGTTGTCGGTAACAAGGTAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF383 DUF384

Protein Analysis

128

Amino Acids

14.27

Weight (kDa)

5.33

Isoelectric Point (pI)

44.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF383 PF04063 17 - 71 6.9e-06 Domain of unknown function (DUF383)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013408)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14300 AT1G14300
fragaria_vesca FvH4_4g31470 FvH4_4g31470
malus_domestica MD16G1074200.v1.1
pyrus_communis pycom16g06420
rosa_chinensis RchiOBHm_Chr4g0439961
rosa_laevigata RLG00000006220
rosa_multiflora Rmu_sc0006000.1_g000004 Rmu_sc0023432.1_g000002
rosa_roxburghii Rroxscaffold_5G00380910
rosa_rugosa Rorug04G0322700
rosa_samantha Rh4AG373800 Rh4BG386100 Rh4CG377200 Rh4CG400600 Rh4DG380400
rosa_wichuraiana Rw4G031970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 213
AclWI GGATC 1 cut(s) 186
AcoI YGGCCR 1 cut(s) 344
AcsI RAATTY 2 cut(s) 233, 316
AfaI GTAC 1 cut(s) 115
AfiI CCNNNNNNNGG 3 cut(s) 31, 73, 368
AgsI TTSAA 2 cut(s) 232, 296
AjnI CCWGG 1 cut(s) 24
AluBI AGCT 5 cut(s) 172, 256, 299, 310, 350
AluI AGCT 5 cut(s) 172, 256, 299, 310, 350
AlwI GGATC 1 cut(s) 186
AoxI GGCC 1 cut(s) 344
ApeKI GCWGC 1 cut(s) 310
ApoI RAATTY 2 cut(s) 233, 316
AspS9I GGNCC 1 cut(s) 34
AvaII GGWCC 1 cut(s) 34
BalI TGGCCA 1 cut(s) 346
BanII GRGCYC 1 cut(s) 159
BbvI GCAGC 1 cut(s) 297
BciT130I CCWGG 1 cut(s) 26
BfmI CTRYAG 2 cut(s) 128, 311
BisI GCNGC 2 cut(s) 214, 311
BlsI GCNGC 2 cut(s) 215, 312
Bme1390I CCNGG 1 cut(s) 26
Bme18I GGWCC 1 cut(s) 34
BmgT120I GGNCC 1 cut(s) 34
BmrFI CCNGG 1 cut(s) 26
BpmI CTGGAG 2 cut(s) 156, 184
Bsc4I CCNNNNNNNGG 3 cut(s) 31, 73, 368
Bse118I RCCGGY 1 cut(s) 66
Bse1I ACTGG 2 cut(s) 139, 201
BseBI CCWGG 1 cut(s) 26
BseLI CCNNNNNNNGG 3 cut(s) 31, 73, 368
BseNI ACTGG 2 cut(s) 139, 201
BseRI GAGGAG 1 cut(s) 187
BseXI GCAGC 1 cut(s) 297
BshFI GGCC 1 cut(s) 346
BsiSI CCGG 1 cut(s) 67
BslI CCNNNNNNNGG 3 cut(s) 31, 73, 368
BsnI GGCC 1 cut(s) 346
Bsp1286I GDGCHC 1 cut(s) 159
Bsp143I GATC 2 cut(s) 179, 191
BspACI CCGC 1 cut(s) 213
BspANI GGCC 1 cut(s) 346
BspMAI CTGCAG 2 cut(s) 132, 315
BspPI GGATC 1 cut(s) 186
BsrFI RCCGGY 1 cut(s) 66
BsrI ACTGG 2 cut(s) 139, 201
BssAI RCCGGY 1 cut(s) 66
BssMI GATC 2 cut(s) 179, 191
Bst2UI CCWGG 1 cut(s) 26
Bst4CI ACNGT 2 cut(s) 262, 287
BstAPI GCANNNNNTGC 1 cut(s) 319
BstC8I GCNNGC 2 cut(s) 308, 348
BstKTI GATC 2 cut(s) 182, 194
BstMBI GATC 2 cut(s) 179, 191
BstMWI GCNNNNNNNGC 3 cut(s) 79, 319, 352
BstNI CCWGG 1 cut(s) 26
BstSCI CCNGG 1 cut(s) 24
BstSFI CTRYAG 2 cut(s) 128, 311
BstV1I GCAGC 1 cut(s) 297
BstX2I RGATCY 1 cut(s) 191
BstYI RGATCY 1 cut(s) 191
BsuRI GGCC 1 cut(s) 346
BtsIMutI CAGTG 1 cut(s) 208
Cac8I GCNNGC 2 cut(s) 308, 348
Cfr10I RCCGGY 1 cut(s) 66
Cfr13I GGNCC 1 cut(s) 34
Csp6I GTAC 1 cut(s) 114
CviQI GTAC 1 cut(s) 114
DpnI GATC 2 cut(s) 181, 193
DpnII GATC 2 cut(s) 179, 191
EaeI YGGCCR 1 cut(s) 344
Eco24I GRGCYC 1 cut(s) 159
Eco47I GGWCC 1 cut(s) 34
EcoRII CCWGG 1 cut(s) 24
EcoT38I GRGCYC 1 cut(s) 159
FaiI YATR 5 cut(s) 11, 32, 62, 162, 167
FalI AAGNNNNNCTT 2 cut(s) 240, 272
Fnu4HI GCNGC 2 cut(s) 214, 311
FriOI GRGCYC 1 cut(s) 159
Fsp4HI GCNGC 2 cut(s) 214, 311
GluI GCNGC 2 cut(s) 214, 311
GsuI CTGGAG 2 cut(s) 156, 184
HaeIII GGCC 1 cut(s) 346
HapII CCGG 1 cut(s) 67
HindIII AAGCTT 1 cut(s) 170
HinfI GANTC 1 cut(s) 228
HpaII CCGG 1 cut(s) 67
Hpy188I TCNGA 2 cut(s) 52, 334
Hpy188III TCNNGA 1 cut(s) 270
HpyCH4III ACNGT 2 cut(s) 262, 287
HpyCH4V TGCA 3 cut(s) 130, 151, 313
HpyF10VI GCNNNNNNNGC 3 cut(s) 79, 319, 352
Kzo9I GATC 2 cut(s) 179, 191
Lsp1109I GCAGC 1 cut(s) 297
MaeIII GTNAC 2 cut(s) 281, 371
MalI GATC 2 cut(s) 181, 193
MboI GATC 2 cut(s) 179, 191
MboII GAAGA 2 cut(s) 218, 229
MflI RGATCY 1 cut(s) 191
MhlI GDGCHC 1 cut(s) 159
MlsI TGGCCA 1 cut(s) 346
MluCI AATT 3 cut(s) 101, 233, 316
MluNI TGGCCA 1 cut(s) 346
MnlI CCTC 3 cut(s) 130, 205, 208
Mox20I TGGCCA 1 cut(s) 346
MscI TGGCCA 1 cut(s) 346
MseI TTAA 4 cut(s) 21, 45, 90, 222
Msp20I TGGCCA 1 cut(s) 346
MspI CCGG 1 cut(s) 67
MspR9I CCNGG 1 cut(s) 26
MvaI CCWGG 1 cut(s) 26
MwoI GCNNNNNNNGC 3 cut(s) 79, 319, 352
NdeII GATC 2 cut(s) 179, 191
PfeI GAWTC 1 cut(s) 228
PkrI GCNGC 2 cut(s) 215, 312
Psp6I CCWGG 1 cut(s) 24
PspGI CCWGG 1 cut(s) 24
PspPI GGNCC 1 cut(s) 34
PstI CTGCAG 2 cut(s) 132, 315
PsuI RGATCY 1 cut(s) 191
RsaI GTAC 1 cut(s) 115
RsaNI GTAC 1 cut(s) 114
SaqAI TTAA 4 cut(s) 21, 45, 90, 222
SatI GCNGC 2 cut(s) 214, 311
Sau3AI GATC 2 cut(s) 179, 191
Sau96I GGNCC 1 cut(s) 34
ScrFI CCNGG 1 cut(s) 26
SduI GDGCHC 1 cut(s) 159
SfcI CTRYAG 2 cut(s) 128, 311
SinI GGWCC 1 cut(s) 34
Sse9I AATT 3 cut(s) 101, 233, 316
SsiI CCGC 1 cut(s) 213
StyD4I CCNGG 1 cut(s) 24
TaaI ACNGT 2 cut(s) 262, 287
TasI AATT 3 cut(s) 101, 233, 316
TauI GCSGC 1 cut(s) 216
TfiI GAWTC 1 cut(s) 228
Tru1I TTAA 4 cut(s) 21, 45, 90, 222
Tru9I TTAA 4 cut(s) 21, 45, 90, 222
TscAI CASTG 1 cut(s) 208
TseI GCWGC 1 cut(s) 310
TspDTI ATGAA 2 cut(s) 182, 229
TspRI CASTG 1 cut(s) 208
VpaK11BI GGWCC 1 cut(s) 34
XapI RAATTY 2 cut(s) 233, 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.