MD16G1074200.v1.1

Domain of unknown function (DUF383)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0013408
Physical Location & Seq
Reverse (-)
5190396 .. 5193802
3407 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1074200.v1.1.491

Sequence Viewer

Length: 1011 bp
ATGGCGACGGAACTGGAAGAGCTAGTGGGATTTCTATCCTCTCCATCTCCAGCAGTGACAAAGGCAGCTGTTGATATCGTTCGGGGGCTAACCGGCTCCGACGACGGCCTGCAGTCTTTGGCCAATTATTCGAAGATTCTGCTTCCGTCGTTATCTCGTCTCGTAGCCGGAAACAAGGAGGTCGCGGAACCTGCAGCGGAAGCTCTTGTTAATCTTTCACAAAATTCAGGTCTAGCGGCGAAGATGGTTGACATGGGAATGATTAACGTTGCTATGGACGTTTTGTATAAGCCAGGGTCTGGCATTAGCCCATTGCTGGTTATGCTTTTAGTTAATCTCACGCAGTTGGATGTCGGTGTTACTTCTTTACTGCAGACTGGAGACGAGAAGATGCAAGGGCTCTATGTTATGAAGCTTGTGAGATCATTTTGTAGATCTTCGGATGAAGCTAGCGAAGATCCATTTGAGCATGTTGGTTCCATACTTGTAAACATCTCAAAGCAGGAAGCAGGAAGGAAGCTTTTGCTGGACCCTAAGCGAGGGCTTTTAAGGCAGATTATTAGACAGTTCGACTCTCCTAGTCCTTTGAGAAGGAAAGGGGTTTCTGGAACTATTCGCAACTGTTGCTTTGAGGCTGAGAGCCAGCTTCAGAATTTGCTTTTGATTTCAGAGTTTCTCTGGCCAGCTCTGCTTCTTCCGGTTGCTGGTAACAAGATTTACAGTGAACAGGATAGATCGAAAATGCCACTTGAGCTTGGGAGTGCTCTCTCAATTGAGCGTGAACCAGTTGATGATCCTGAAATTCGTGTTCAAGCACTGGAGGCCATATACTTGATAACATTACAGGAGGCAGGTCTAAGAGCCTTCTGGTCCGTCAATGGACCGAGAATAATACAAGTAGGCTACGAAGACGAGGAAGATCTTAAAGTAATGGGAGCATATGAGCAACTTGGCGCCTTGTTGATTAACAGCAGCGGGACAGAGGAACCAACAACCGAGACATCTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF383 DUF384

Protein Analysis

337

Amino Acids

36.5

Weight (kDa)

4.7

Isoelectric Point (pI)

57.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF383 PF04063 96 - 269 2.9e-37 Domain of unknown function (DUF383)
DUF384 PF04064 275 - 327 9.5e-09 Domain of unknown function (DUF384)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013408)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14300 AT1G14300
fragaria_vesca FvH4_4g31470 FvH4_4g31470
malus_domestica MD16G1074200.v1.1
pyrus_communis pycom16g06420
rosa_chinensis RchiOBHm_Chr4g0439961
rosa_laevigata RLG00000006220
rosa_multiflora Rmu_sc0006000.1_g000004 Rmu_sc0023432.1_g000002
rosa_roxburghii Rroxscaffold_5G00380910
rosa_rugosa Rorug04G0322700
rosa_samantha Rh4AG373800 Rh4BG386100 Rh4CG377200 Rh4CG400600 Rh4DG380400
rosa_wichuraiana Rw4G031970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 199, 842
AccB1I GGYRCC 1 cut(s) 953
AccB7I CCANNNNNTGG 1 cut(s) 299
AccII CGCG 1 cut(s) 185
AciI CCGC 4 cut(s) 185, 197, 236, 975
AclI AACGTT 1 cut(s) 267
AclWI GGATC 2 cut(s) 452, 788
AcoI YGGCCR 2 cut(s) 120, 680
AcsI RAATTY 3 cut(s) 223, 652, 801
AcuI CTGAAG 1 cut(s) 632
AcyI GRCGYC 1 cut(s) 954
AfiI CCNNNNNNNGG 4 cut(s) 299, 316, 539, 704
AgsI TTSAA 1 cut(s) 812
AjnI CCWGG 1 cut(s) 292
AluBI AGCT 9 cut(s) 22, 68, 203, 415, 449, 520, 646, 686, 754
AluI AGCT 9 cut(s) 22, 68, 203, 415, 449, 520, 646, 686, 754
Alw21I GWGCWC 1 cut(s) 766
Alw26I GTCTC 3 cut(s) 164, 375, 992
AlwI GGATC 2 cut(s) 452, 788
AlwNI CAGNNNCTG 1 cut(s) 299
AoxI GGCC 4 cut(s) 106, 120, 680, 822
ApeKI GCWGC 3 cut(s) 65, 194, 972
ApoI RAATTY 3 cut(s) 223, 652, 801
ArsI GACNNNNNNTTYG 2 cut(s) 214, 246
AspLEI GCGC 1 cut(s) 956
AspS9I GGNCC 3 cut(s) 529, 870, 881
AsuII TTCGAA 1 cut(s) 131
AsuNHI GCTAGC 1 cut(s) 449
AvaII GGWCC 3 cut(s) 529, 870, 881
BalI TGGCCA 2 cut(s) 122, 682
BanI GGYRCC 1 cut(s) 953
BanII GRGCYC 1 cut(s) 402
BbsI GAAGAC 1 cut(s) 915
Bbv12I GWGCWC 1 cut(s) 766
BbvI GCAGC 3 cut(s) 77, 206, 984
BccI CCATC 2 cut(s) 52, 238
BceAI ACGGC 1 cut(s) 121
BcgI CGANNNNNNTGC 2 cut(s) 121, 155
BciT130I CCWGG 1 cut(s) 294
BcoDI GTCTC 3 cut(s) 164, 375, 992
BfaI CTAG 4 cut(s) 23, 233, 450, 579
BfmI CTRYAG 3 cut(s) 110, 192, 371
BfoI RGCGCY 1 cut(s) 957
BfuAI ACCTGC 2 cut(s) 199, 842
BglII AGATCT 2 cut(s) 434, 919
BisI GCNGC 4 cut(s) 66, 195, 237, 973
BlsI GCNGC 4 cut(s) 67, 196, 238, 974
Bme1390I CCNGG 1 cut(s) 294
Bme18I GGWCC 3 cut(s) 529, 870, 881
BmgT120I GGNCC 3 cut(s) 529, 870, 881
BmiI GGNNCC 6 cut(s) 97, 189, 478, 531, 955, 987
BmrFI CCNGG 1 cut(s) 294
BmsI GCATC 1 cut(s) 381
BmtI GCTAGC 1 cut(s) 453
BpiI GAAGAC 1 cut(s) 915
BpmI CTGGAG 3 cut(s) 33, 399, 839
Bpu10I CCTNAGC 1 cut(s) 534
Bpu14I TTCGAA 1 cut(s) 131
BpuEI CTTGAG 1 cut(s) 770
BsaBI GATNNNNATC 1 cut(s) 34
BsaHI GRCGYC 1 cut(s) 954
BsaJI CCNNGG 1 cut(s) 293
BsaWI WCCGGW 1 cut(s) 697
Bsc4I CCNNNNNNNGG 4 cut(s) 299, 316, 539, 704
Bse118I RCCGGY 1 cut(s) 92
Bse1I ACTGG 4 cut(s) 18, 382, 785, 822
Bse3DI GCAATG 1 cut(s) 311
Bse8I GATNNNNATC 1 cut(s) 34
BseBI CCWGG 1 cut(s) 294
BseDI CCNNGG 1 cut(s) 293
BseGI GGATG 2 cut(s) 355, 448
BseJI GATNNNNATC 1 cut(s) 34
BseLI CCNNNNNNNGG 4 cut(s) 299, 316, 539, 704
BseMI GCAATG 1 cut(s) 311
BseMII CTCAG 1 cut(s) 627
BseNI ACTGG 4 cut(s) 18, 382, 785, 822
BseXI GCAGC 3 cut(s) 77, 206, 984
Bsh1236I CGCG 1 cut(s) 185
BshFI GGCC 4 cut(s) 108, 122, 682, 824
BshNI GGYRCC 1 cut(s) 953
BsiHKAI GWGCWC 1 cut(s) 766
BsiSI CCGG 3 cut(s) 93, 168, 698
BslFI GGGAC 1 cut(s) 991
BslI CCNNNNNNNGG 4 cut(s) 299, 316, 539, 704
BsmAI GTCTC 3 cut(s) 164, 375, 992
BsmBI CGTCTC 2 cut(s) 164, 375
BsmFI GGGAC 1 cut(s) 991
BsnI GGCC 4 cut(s) 108, 122, 682, 824
Bsp119I TTCGAA 1 cut(s) 131
Bsp1286I GDGCHC 2 cut(s) 402, 766
Bsp143I GATC 6 cut(s) 422, 434, 457, 734, 793, 919
BspACI CCGC 4 cut(s) 185, 197, 236, 975
BspANI GGCC 4 cut(s) 108, 122, 682, 824
BspCNI CTCAG 1 cut(s) 628
BspFNI CGCG 1 cut(s) 185
BspLI GGNNCC 6 cut(s) 97, 189, 478, 531, 955, 987
BspMAI CTGCAG 3 cut(s) 114, 196, 375
BspMI ACCTGC 2 cut(s) 199, 842
BspOI GCTAGC 1 cut(s) 453
BspPI GGATC 2 cut(s) 452, 788
BspQI GCTCTTC 1 cut(s) 12
BspT104I TTCGAA 1 cut(s) 131
BspT107I GGYRCC 1 cut(s) 953
BsrDI GCAATG 1 cut(s) 311
BsrFI RCCGGY 1 cut(s) 92
BsrI ACTGG 4 cut(s) 18, 382, 785, 822
BssAI RCCGGY 1 cut(s) 92
BssECI CCNNGG 1 cut(s) 293
BssMI GATC 6 cut(s) 422, 434, 457, 734, 793, 919
BssNI GRCGYC 1 cut(s) 954
Bst2UI CCWGG 1 cut(s) 294
Bst4CI ACNGT 3 cut(s) 567, 623, 722
Bst6I CTCTTC 1 cut(s) 12
BstACI GRCGYC 1 cut(s) 954
BstAPI GCANNNNNTGC 1 cut(s) 624
BstBI TTCGAA 1 cut(s) 131
BstC8I GCNNGC 4 cut(s) 110, 451, 644, 684
BstDEI CTNAG 3 cut(s) 534, 636, 857
BstENI CCTNNNNNAGG 1 cut(s) 537
BstF5I GGATG 2 cut(s) 355, 448
BstFNI CGCG 1 cut(s) 185
BstH2I RGCGCY 1 cut(s) 957
BstHHI GCGC 1 cut(s) 956
BstKTI GATC 6 cut(s) 425, 437, 460, 737, 796, 922
BstMAI GTCTC 3 cut(s) 164, 375, 992
BstMBI GATC 6 cut(s) 422, 434, 457, 734, 793, 919
BstMWI GCNNNNNNNGC 8 cut(s) 191, 200, 322, 550, 624, 688, 751, 821
BstNI CCWGG 1 cut(s) 294
BstNSI RCATGY 1 cut(s) 473
BstSCI CCNGG 1 cut(s) 292
BstSFI CTRYAG 3 cut(s) 110, 192, 371
BstUI CGCG 1 cut(s) 185
BstV1I GCAGC 3 cut(s) 77, 206, 984
BstV2I GAAGAC 1 cut(s) 915
BstX2I RGATCY 3 cut(s) 434, 457, 919
BstYI RGATCY 3 cut(s) 434, 457, 919
BsuRI GGCC 4 cut(s) 108, 122, 682, 824
BtsCI GGATG 2 cut(s) 355, 448
BtsI GCAGTG 1 cut(s) 60
BtsIMutI CAGTG 3 cut(s) 60, 727, 815
BveI ACCTGC 2 cut(s) 199, 842
Cac8I GCNNGC 4 cut(s) 110, 451, 644, 684
CaiI CAGNNNCTG 1 cut(s) 299
CfoI GCGC 1 cut(s) 956
Cfr10I RCCGGY 1 cut(s) 92
Cfr13I GGNCC 3 cut(s) 529, 870, 881
CviAII CATG 2 cut(s) 253, 470
DdeI CTNAG 3 cut(s) 534, 636, 857
DinI GGCGCC 1 cut(s) 955
DpnI GATC 6 cut(s) 424, 436, 459, 736, 795, 921
DpnII GATC 6 cut(s) 422, 434, 457, 734, 793, 919
EaeI YGGCCR 2 cut(s) 120, 680
Eam1104I CTCTTC 1 cut(s) 12
EarI CTCTTC 1 cut(s) 12
Eco24I GRGCYC 1 cut(s) 402
Eco32I GATATC 1 cut(s) 76
Eco47I GGWCC 3 cut(s) 529, 870, 881
Eco57I CTGAAG 1 cut(s) 632
EcoNI CCTNNNNNAGG 1 cut(s) 537
EcoRII CCWGG 1 cut(s) 292
EcoRV GATATC 1 cut(s) 76
EcoT38I GRGCYC 1 cut(s) 402
EgeI GGCGCC 1 cut(s) 955
EheI GGCGCC 1 cut(s) 955
Esp3I CGTCTC 2 cut(s) 164, 375
FaeI CATG 2 cut(s) 256, 473
FaqI GGGAC 1 cut(s) 991
FatI CATG 2 cut(s) 252, 469
FauI CCCGC 1 cut(s) 968
FauNDI CATATG 1 cut(s) 940
Fnu4HI GCNGC 4 cut(s) 66, 195, 237, 973
FokI GGATG 2 cut(s) 362, 455
FriOI GRGCYC 1 cut(s) 402
Fsp4HI GCNGC 4 cut(s) 66, 195, 237, 973
FspBI CTAG 4 cut(s) 23, 233, 450, 579
GlaI GCGC 1 cut(s) 955
GluI GCNGC 4 cut(s) 66, 195, 237, 973
GsuI CTGGAG 3 cut(s) 33, 399, 839
HaeII RGCGCY 1 cut(s) 957
HaeIII GGCC 4 cut(s) 108, 122, 682, 824
HapII CCGG 3 cut(s) 93, 168, 698
HhaI GCGC 1 cut(s) 956
Hin1I GRCGYC 1 cut(s) 954
Hin1II CATG 2 cut(s) 256, 473
Hin6I GCGC 1 cut(s) 954
HinP1I GCGC 1 cut(s) 954
HincII GTYRAC 1 cut(s) 250
HindII GTYRAC 1 cut(s) 250
HindIII AAGCTT 2 cut(s) 413, 518
HinfI GANTC 2 cut(s) 136, 572
HpaII CCGG 3 cut(s) 93, 168, 698
Hpy166II GTNNAC 4 cut(s) 250, 490, 725, 782
Hpy188I TCNGA 4 cut(s) 100, 442, 651, 670
Hpy188III TCNNGA 2 cut(s) 606, 797
Hpy8I GTNNAC 4 cut(s) 250, 490, 725, 782
Hpy99I CGWCG 4 cut(s) 10, 104, 107, 151
HpyAV CCTTC 3 cut(s) 507, 585, 874
HpyCH4III ACNGT 3 cut(s) 567, 623, 722
HpyCH4IV ACGT 2 cut(s) 267, 279
HpyCH4V TGCA 4 cut(s) 112, 194, 373, 394
HpyF10VI GCNNNNNNNGC 8 cut(s) 191, 200, 322, 550, 624, 688, 751, 821
HpyF3I CTNAG 3 cut(s) 534, 636, 857
HpySE526I ACGT 2 cut(s) 267, 279
Hsp92I GRCGYC 1 cut(s) 954
Hsp92II CATG 2 cut(s) 256, 473
HspAI GCGC 1 cut(s) 954
KasI GGCGCC 1 cut(s) 953
Kzo9I GATC 6 cut(s) 422, 434, 457, 734, 793, 919
LguI GCTCTTC 1 cut(s) 12
LmnI GCTCC 2 cut(s) 101, 935
Lsp1109I GCAGC 3 cut(s) 77, 206, 984
LweI GCATC 1 cut(s) 381
MaeI CTAG 4 cut(s) 23, 233, 450, 579
MaeII ACGT 2 cut(s) 267, 279
MaeIII GTNAC 3 cut(s) 55, 358, 707
MalI GATC 6 cut(s) 424, 436, 459, 736, 795, 921
MboI GATC 6 cut(s) 422, 434, 457, 734, 793, 919
MboII GAAGA 9 cut(s) 29, 145, 253, 400, 429, 467, 686, 920, 929
MfeI CAATTG 1 cut(s) 771
MflI RGATCY 3 cut(s) 434, 457, 919
MhlI GDGCHC 2 cut(s) 402, 766
MlsI TGGCCA 2 cut(s) 122, 682
MluCI AATT 6 cut(s) 124, 223, 652, 771, 801, 1006
MluNI TGGCCA 2 cut(s) 122, 682
Mly113I GGCGCC 1 cut(s) 954
MlyI GAGTC 1 cut(s) 566
MmeI TCCRAC 2 cut(s) 123, 327
MnlI CCTC 8 cut(s) 49, 172, 533, 625, 814, 841, 907, 976
Mox20I TGGCCA 2 cut(s) 122, 682
MscI TGGCCA 2 cut(s) 122, 682
MseI TTAA 6 cut(s) 210, 264, 333, 548, 924, 966
MslI CAYNNNNRTG 1 cut(s) 257
Msp20I TGGCCA 2 cut(s) 122, 682
MspA1I CMGCKG 3 cut(s) 68, 197, 975
MspI CCGG 3 cut(s) 93, 168, 698
MspR9I CCNGG 1 cut(s) 294
MunI CAATTG 1 cut(s) 771
MvaI CCWGG 1 cut(s) 294
MvnI CGCG 1 cut(s) 185
MwoI GCNNNNNNNGC 8 cut(s) 191, 200, 322, 550, 624, 688, 751, 821
NarI GGCGCC 1 cut(s) 954
NdeI CATATG 1 cut(s) 940
NdeII GATC 6 cut(s) 422, 434, 457, 734, 793, 919
NheI GCTAGC 1 cut(s) 449
NlaIII CATG 2 cut(s) 256, 473
NlaIV GGNNCC 6 cut(s) 97, 189, 478, 531, 955, 987
NmuCI GTSAC 1 cut(s) 55
NspI RCATGY 1 cut(s) 473
NspV TTCGAA 1 cut(s) 131
PciSI GCTCTTC 1 cut(s) 12
PfeI GAWTC 1 cut(s) 136
PflMI CCANNNNNTGG 1 cut(s) 299
PkrI GCNGC 4 cut(s) 67, 196, 238, 974
PleI GAGTC 1 cut(s) 566
PluTI GGCGCC 1 cut(s) 957
PpsI GAGTC 1 cut(s) 566
Psp1406I AACGTT 1 cut(s) 267
Psp6I CCWGG 1 cut(s) 292
PspGI CCWGG 1 cut(s) 292
PspN4I GGNNCC 6 cut(s) 97, 189, 478, 531, 955, 987
PspPI GGNCC 3 cut(s) 529, 870, 881
PstI CTGCAG 3 cut(s) 114, 196, 375
PstNI CAGNNNCTG 1 cut(s) 299
PsuI RGATCY 3 cut(s) 434, 457, 919
PvuII CAGCTG 1 cut(s) 68
RseI CAYNNNNRTG 1 cut(s) 257
SapI GCTCTTC 1 cut(s) 12
SaqAI TTAA 6 cut(s) 210, 264, 333, 548, 924, 966
SatI GCNGC 4 cut(s) 66, 195, 237, 973
Sau3AI GATC 6 cut(s) 422, 434, 457, 734, 793, 919
Sau96I GGNCC 3 cut(s) 529, 870, 881
SchI GAGTC 1 cut(s) 566
ScrFI CCNGG 1 cut(s) 294
SduI GDGCHC 2 cut(s) 402, 766
SfaNI GCATC 1 cut(s) 381
SfcI CTRYAG 3 cut(s) 110, 192, 371
SfoI GGCGCC 1 cut(s) 955
SfuI TTCGAA 1 cut(s) 131
SinI GGWCC 3 cut(s) 529, 870, 881
SmiMI CAYNNNNRTG 1 cut(s) 257
SmlI CTYRAG 1 cut(s) 749
SmoI CTYRAG 1 cut(s) 749
Sse9I AATT 6 cut(s) 124, 223, 652, 771, 801, 1006
SsiI CCGC 4 cut(s) 185, 197, 236, 975
SspDI GGCGCC 1 cut(s) 953
SspMI CTAG 4 cut(s) 23, 233, 450, 579
StyD4I CCNGG 1 cut(s) 292
TaaI ACNGT 3 cut(s) 567, 623, 722
TaiI ACGT 2 cut(s) 270, 282
TaqI TCGA 3 cut(s) 131, 570, 737
TaqII GACCGA 1 cut(s) 898
TasI AATT 6 cut(s) 124, 223, 652, 771, 801, 1006
TauI GCSGC 1 cut(s) 239
TfiI GAWTC 1 cut(s) 136
Tru1I TTAA 6 cut(s) 210, 264, 333, 548, 924, 966
Tru9I TTAA 6 cut(s) 210, 264, 333, 548, 924, 966
TscAI CASTG 3 cut(s) 60, 727, 822
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 3 cut(s) 65, 194, 972
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 2 cut(s) 425, 459
TspGWI ACGGA 3 cut(s) 23, 135, 862
TspRI CASTG 3 cut(s) 60, 727, 822
Van91I CCANNNNNTGG 1 cut(s) 299
VpaK11BI GGWCC 3 cut(s) 529, 870, 881
XagI CCTNNNNNAGG 1 cut(s) 537
XapI RAATTY 3 cut(s) 223, 652, 801
XceI RCATGY 1 cut(s) 473
XspI CTAG 4 cut(s) 23, 233, 450, 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.