Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005812

Physical Location & Seq

Genomic Coordinates Forward (+)

49821838 .. 49828729

Gene Structure 6892 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0322700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGGGAGGGGGAGAGTTGAGCTGAAGAGGATTGAGAACAAGATCAACAGGCAGGTGACCTTTGCAAAGAGAAGGAACGGACTATTGAAGAAAGCCTACGAGCTTTCCGTTCTTTGCGATGCCGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAGCTGTACGAGTTTTGCAGTAGTTCAAGCAGCATGCTCAAAACACTTGAGAGGTACCAGAAGTGCAACTATGGAGCACCGGAGACAAATGTATCTACAAGGGAGGCCTTGGAATTGAGTAGCCAGCAGGAGTATTTGAAGCTCAAGGCACGTTATGAAGCCCTACAAAGAAACCAAAGGAATCTTCTTGGAGAAGATCTTGGCCCTTTAAGTAGCAAAGAGCTTGAATCACTTGAAAGGCAGCTGGATATGTCATTGAAGCAGATCAGATCAACACGGACCCAATGCATGCTGGATCAGCTCACAGATCTTCAGCGAAAGGAACACATGCTTAATGAAGCAAACAGGACACTGAAACAAAGGTTGTTTGAGGGATACAATGTACATCAACTCCAACTGAATGCAAATGCTGAGGATGTGGGATATGGCCGGCAACAAGCTCATCATCAACCTCAGGGCGAGGGCTTCTTCCAACCCTTAGAGTGCGAGCCCACGTTACAAATTGGGTATCACCAGAATGATCAGATACAAGTTGTGACGGCCGGGCCGAGCGTGAATTACATGGGAGGATGGCTGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF616

Protein Analysis

245

Amino Acids

28.21

Weight (kDa)

8.74

Isoelectric Point (pI)

43.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	1.6e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	92 - 174	1.2e-26	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02910 AT2G02910
fragaria_vesca	FvH4_4g31480 FvH4_4g31480 FvH4_4g31480 FvH4_4g31480 FvH4_4g31480 FvH4_4g31480 FvH4_4g31480 FvH4_4g31480 FvH4_4g31480 FvH4_4g31480 FvH4_4g31480
malus_domestica	MD16G1074300.v1.1
prunus_persica	Prupe.1G273000_v2.0.a1
pyrus_communis	pycom16g06430
rosa_chinensis	RchiOBHm_Chr4g0439971
rosa_laevigata	RLG00000006219
rosa_multiflora	Rmu_sc0006000.1_g000005
rosa_roxburghii	Rroxscaffold_5G00380920
rosa_rugosa	Rorug04G0322700 Rorug04G0322800 Rorug04G0322800
rosa_samantha	Rh4AG373900 Rh4BG386200 Rh4CG400700 Rh4DG380500
rosa_wichuraiana	Rw4G031980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	43
Acc65I	GGTACC	1 cut(s)	210
AccB1I	GGYRCC	1 cut(s)	210
AclWI	GGATC	1 cut(s)	459
AcoI	YGGCCR	2 cut(s)	583, 696
AcuI	CTGAAG	2 cut(s)	44, 452
AfaI	GTAC	3 cut(s)	164, 212, 540
AgsI	TTSAA	6 cut(s)	88, 183, 295, 383, 392, 415
AjuI	GAANNNNNNNTTGG	2 cut(s)	324, 356
AluBI	AGCT	8 cut(s)	22, 103, 160, 298, 379, 400, 457, 596
AluI	AGCT	8 cut(s)	22, 103, 160, 298, 379, 400, 457, 596
Alw21I	GWGCWC	1 cut(s)	235
Alw26I	GTCTC	1 cut(s)	233
AlwI	GGATC	1 cut(s)	459
AoxI	GGCC	5 cut(s)	261, 358, 583, 696, 701
ApeKI	GCWGC	3 cut(s)	186, 397, 730
Asp718I	GGTACC	1 cut(s)	210
AspS9I	GGNCC	3 cut(s)	359, 435, 701
AsuC2I	CCSGG	1 cut(s)	700
AsuHPI	GGTGA	2 cut(s)	67, 659
AvaII	GGWCC	1 cut(s)	435
AxyI	CCTNAGG	1 cut(s)	609
BaeI	ACNNNNGTAYC	2 cut(s)	231, 264
BanI	GGYRCC	1 cut(s)	210
BanII	GRGCYC	1 cut(s)	648
BarI	GAAGNNNNNNTAC	2 cut(s)	80, 112
Bbv12I	GWGCWC	1 cut(s)	235
BbvCI	CCTCAGC	1 cut(s)	567
BbvI	GCAGC	3 cut(s)	198, 409, 717
BccI	CCATC	1 cut(s)	720
BceAI	ACGGC	1 cut(s)	711
BciVI	GTATCC	1 cut(s)	524
BclI	TGATCA	1 cut(s)	676
BcnI	CCSGG	1 cut(s)	700
BcoDI	GTCTC	1 cut(s)	233
BfuAI	ACCTGC	1 cut(s)	43
BfuI	GTATCC	1 cut(s)	524
BglII	AGATCT	2 cut(s)	352, 463
BisI	GCNGC	3 cut(s)	187, 398, 731
BlsI	GCNGC	3 cut(s)	188, 399, 732
Bme1390I	CCNGG	1 cut(s)	700
Bme18I	GGWCC	1 cut(s)	435
BmgT120I	GGNCC	3 cut(s)	359, 435, 701
BmiI	GGNNCC	2 cut(s)	212, 437
BmrFI	CCNGG	1 cut(s)	700
BmsI	GCATC	1 cut(s)	109
Bpu10I	CCTNAGC	1 cut(s)	567
BpuEI	CTTGAG	2 cut(s)	224, 284
BpuMI	CCSGG	1 cut(s)	700
BsaJI	CCNNGG	2 cut(s)	123, 264
BsaWI	WCCGGW	1 cut(s)	235
BsaXI	ACNNNNNCTCC	2 cut(s)	531, 561
Bse118I	RCCGGY	1 cut(s)	585
Bse21I	CCTNAGG	1 cut(s)	609
BseDI	CCNNGG	2 cut(s)	123, 264
BseGI	GGATG	2 cut(s)	577, 731
BseMII	CTCAG	2 cut(s)	558, 623
BseX3I	CGGCCG	1 cut(s)	696
BseXI	GCAGC	3 cut(s)	198, 409, 717
Bsh1285I	CGRYCG	1 cut(s)	699
BshFI	GGCC	5 cut(s)	263, 360, 585, 698, 703
BshNI	GGYRCC	1 cut(s)	210
BsiEI	CGRYCG	1 cut(s)	699
BsiHKAI	GWGCWC	1 cut(s)	235
BsiSI	CCGG	3 cut(s)	236, 586, 699
BsmAI	GTCTC	1 cut(s)	233
BsmI	GAATGC	1 cut(s)	562
BsnI	GGCC	5 cut(s)	263, 360, 585, 698, 703
Bsp1286I	GDGCHC	2 cut(s)	235, 648
Bsp1407I	TGTACA	1 cut(s)	538
Bsp143I	GATC	7 cut(s)	42, 352, 420, 425, 451, 463, 676
BspANI	GGCC	5 cut(s)	263, 360, 585, 698, 703
BspCNI	CTCAG	2 cut(s)	559, 622
BspLI	GGNNCC	2 cut(s)	212, 437
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	1 cut(s)	459
BspT107I	GGYRCC	1 cut(s)	210
BsrFI	RCCGGY	1 cut(s)	585
BsrGI	TGTACA	1 cut(s)	538
BssAI	RCCGGY	1 cut(s)	585
BssECI	CCNNGG	2 cut(s)	123, 264
BssMI	GATC	7 cut(s)	42, 352, 420, 425, 451, 463, 676
BssT1I	CCWWGG	1 cut(s)	264
Bst6I	CTCTTC	1 cut(s)	20
BstAUI	TGTACA	1 cut(s)	538
BstC8I	GCNNGC	5 cut(s)	191, 281, 446, 587, 644
BstDEI	CTNAG	3 cut(s)	567, 609, 634
BstEII	GGTNACC	1 cut(s)	55
BstF5I	GGATG	2 cut(s)	577, 731
BstKTI	GATC	7 cut(s)	45, 355, 423, 428, 454, 466, 679
BstMAI	GTCTC	1 cut(s)	233
BstMBI	GATC	7 cut(s)	42, 352, 420, 425, 451, 463, 676
BstMCI	CGRYCG	1 cut(s)	699
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 454
BstNSI	RCATGY	3 cut(s)	193, 448, 487
BstPI	GGTNACC	1 cut(s)	55
BstSCI	CCNGG	1 cut(s)	698
BstV1I	GCAGC	3 cut(s)	198, 409, 717
BstX2I	RGATCY	2 cut(s)	352, 463
BstYI	RGATCY	2 cut(s)	352, 463
BstZI	CGGCCG	1 cut(s)	696
Bsu36I	CCTNAGG	1 cut(s)	609
BsuI	GTATCC	1 cut(s)	524
BsuRI	GGCC	5 cut(s)	263, 360, 585, 698, 703
BtgZI	GCGATG	1 cut(s)	132
BtsCI	GGATG	2 cut(s)	577, 731
BtsIMutI	CAGTG	1 cut(s)	506
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	5 cut(s)	191, 281, 446, 587, 644
Cfr10I	RCCGGY	1 cut(s)	585
Cfr13I	GGNCC	3 cut(s)	359, 435, 701
Csp6I	GTAC	3 cut(s)	163, 211, 539
CviAII	CATG	5 cut(s)	190, 445, 484, 718, 735
CviQI	GTAC	3 cut(s)	163, 211, 539
DdeI	CTNAG	3 cut(s)	567, 609, 634
DpnI	GATC	7 cut(s)	44, 354, 422, 427, 453, 465, 678
DpnII	GATC	7 cut(s)	42, 352, 420, 425, 451, 463, 676
EaeI	YGGCCR	2 cut(s)	583, 696
EagI	CGGCCG	1 cut(s)	696
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
EclXI	CGGCCG	1 cut(s)	696
Eco130I	CCWWGG	1 cut(s)	264
Eco147I	AGGCCT	1 cut(s)	263
Eco24I	GRGCYC	1 cut(s)	648
Eco47I	GGWCC	1 cut(s)	435
Eco52I	CGGCCG	1 cut(s)	696
Eco57I	CTGAAG	2 cut(s)	44, 452
Eco81I	CCTNAGG	1 cut(s)	609
Eco91I	GGTNACC	1 cut(s)	55
EcoO65I	GGTNACC	1 cut(s)	55
EcoT14I	CCWWGG	1 cut(s)	264
EcoT22I	ATGCAT	1 cut(s)	446
EcoT38I	GRGCYC	1 cut(s)	648
ErhI	CCWWGG	1 cut(s)	264
FaeI	CATG	5 cut(s)	193, 448, 487, 721, 738
FaiI	YATR	9 cut(s)	191, 228, 312, 407, 446, 485, 582, 719, 736
FatI	CATG	5 cut(s)	189, 444, 483, 717, 734
FbaI	TGATCA	1 cut(s)	676
Fnu4HI	GCNGC	3 cut(s)	187, 398, 731
FokI	GGATG	1 cut(s)	584
FriOI	GRGCYC	1 cut(s)	648
Fsp4HI	GCNGC	3 cut(s)	187, 398, 731
GluI	GCNGC	3 cut(s)	187, 398, 731
HaeIII	GGCC	5 cut(s)	263, 360, 585, 698, 703
HapII	CCGG	3 cut(s)	236, 586, 699
Hin1II	CATG	5 cut(s)	193, 448, 487, 721, 738
HinfI	GANTC	2 cut(s)	337, 383
HpaII	CCGG	3 cut(s)	236, 586, 699
HphI	GGTGA	2 cut(s)	67, 659
Hpy188I	TCNGA	2 cut(s)	425, 681
HpyAV	CCTTC	1 cut(s)	66
HpyCH4IV	ACGT	2 cut(s)	307, 650
HpyCH4V	TGCA	5 cut(s)	65, 174, 222, 444, 560
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 454
HpyF3I	CTNAG	3 cut(s)	567, 609, 634
HpySE526I	ACGT	2 cut(s)	307, 650
Hsp92II	CATG	5 cut(s)	193, 448, 487, 721, 738
KpnI	GGTACC	1 cut(s)	214
KroI	GCCGGC	1 cut(s)	585
KroNI	GCCGGC	1 cut(s)	587
Ksp22I	TGATCA	1 cut(s)	676
Kzo9I	GATC	7 cut(s)	42, 352, 420, 425, 451, 463, 676
LmnI	GCTCC	1 cut(s)	230
Lsp1109I	GCAGC	3 cut(s)	198, 409, 717
LweI	GCATC	1 cut(s)	109
MaeII	ACGT	2 cut(s)	307, 650
MaeIII	GTNAC	3 cut(s)	55, 651, 691
MalI	GATC	7 cut(s)	44, 354, 422, 427, 453, 465, 678
MboI	GATC	7 cut(s)	42, 352, 420, 425, 451, 463, 676
MboII	GAAGA	7 cut(s)	37, 100, 133, 332, 362, 458, 616
MflI	RGATCY	2 cut(s)	352, 463
MhlI	GDGCHC	2 cut(s)	235, 648
MluCI	AATT	3 cut(s)	269, 657, 712
MmeI	TCCRAC	2 cut(s)	574, 652
Mph1103I	ATGCAT	1 cut(s)	446
MroNI	GCCGGC	1 cut(s)	585
MseI	TTAA	2 cut(s)	365, 489
MslI	CAYNNNNRTG	1 cut(s)	672
MspA1I	CMGCKG	1 cut(s)	400
MspI	CCGG	3 cut(s)	236, 586, 699
MspR9I	CCNGG	1 cut(s)	700
Mva1269I	GAATGC	1 cut(s)	562
MwoI	GCNNNNNNNGC	2 cut(s)	128, 454
NaeI	GCCGGC	1 cut(s)	587
NciI	CCSGG	1 cut(s)	700
NdeII	GATC	7 cut(s)	42, 352, 420, 425, 451, 463, 676
NgoMIV	GCCGGC	1 cut(s)	585
NlaIII	CATG	5 cut(s)	193, 448, 487, 721, 738
NlaIV	GGNNCC	2 cut(s)	212, 437
NmeAIII	GCCGAG	2 cut(s)	148, 729
NmuCI	GTSAC	2 cut(s)	55, 691
NsiI	ATGCAT	1 cut(s)	446
NspI	RCATGY	3 cut(s)	193, 448, 487
PaeI	GCATGC	2 cut(s)	193, 448
PaqCI	CACCTGC	1 cut(s)	43
PceI	AGGCCT	1 cut(s)	263
PcsI	WCGNNNNNNNCGW	2 cut(s)	105, 701
PctI	GAATGC	1 cut(s)	562
PdiI	GCCGGC	1 cut(s)	587
PfeI	GAWTC	2 cut(s)	337, 383
PkrI	GCNGC	3 cut(s)	188, 399, 732
PspEI	GGTNACC	1 cut(s)	55
PspN4I	GGNNCC	2 cut(s)	212, 437
PspPI	GGNCC	3 cut(s)	359, 435, 701
PsuI	RGATCY	2 cut(s)	352, 463
PvuII	CAGCTG	1 cut(s)	400
RsaI	GTAC	3 cut(s)	164, 212, 540
RsaNI	GTAC	3 cut(s)	163, 211, 539
RseI	CAYNNNNRTG	1 cut(s)	672
SaqAI	TTAA	2 cut(s)	365, 489
SatI	GCNGC	3 cut(s)	187, 398, 731
Sau3AI	GATC	7 cut(s)	42, 352, 420, 425, 451, 463, 676
Sau96I	GGNCC	3 cut(s)	359, 435, 701
ScrFI	CCNGG	1 cut(s)	700
SduI	GDGCHC	2 cut(s)	235, 648
SfaNI	GCATC	1 cut(s)	109
SinI	GGWCC	1 cut(s)	435
SmiMI	CAYNNNNRTG	1 cut(s)	672
SmlI	CTYRAG	2 cut(s)	203, 299
SmoI	CTYRAG	2 cut(s)	203, 299
SphI	GCATGC	2 cut(s)	193, 448
Sse9I	AATT	3 cut(s)	269, 657, 712
SseBI	AGGCCT	1 cut(s)	263
StuI	AGGCCT	1 cut(s)	263
StyD4I	CCNGG	1 cut(s)	698
StyI	CCWWGG	1 cut(s)	264
TaiI	ACGT	2 cut(s)	310, 653
TasI	AATT	3 cut(s)	269, 657, 712
TatI	WGTACW	1 cut(s)	538
TfiI	GAWTC	2 cut(s)	337, 383
Tru1I	TTAA	2 cut(s)	365, 489
Tru9I	TTAA	2 cut(s)	365, 489
TscAI	CASTG	1 cut(s)	513
TseFI	GTSAC	2 cut(s)	55, 691
TseI	GCWGC	3 cut(s)	186, 397, 730
Tsp45I	GTSAC	2 cut(s)	55, 691
TspDTI	ATGAA	2 cut(s)	327, 507
TspGWI	ACGGA	3 cut(s)	93, 97, 448
TspRI	CASTG	1 cut(s)	513
VpaK11BI	GGWCC	1 cut(s)	435
XceI	RCATGY	3 cut(s)	193, 448, 487
Zsp2I	ATGCAT	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.