AT2G02910

Protein of unknown function (DUF616)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0005812
Physical Location & Seq
Reverse (-)
847139 .. 849703
2565 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G02910.1

Sequence Viewer

Length: 1383 bp
ATGTTACCGGAGAGAAGAAGCACGGTGTTTTCTTCTTCTTCTTCATATCTGAATCCATCTGGTCACAATGATAATTCTTTTTTACTTCTTCGGAGAGGCAAAAAGTTTGGTCGTATTGTGAAATTGAAGCTTTCACATTTCTTTTTGTTCTTTGTGTCACTCTTTTTCTTCTCTTGCATGTTCTCTGGCCATAAACTACTCTTTCATGGTTCTGAGTTCTTACCTCATTTTGAGCAAAACCCTTACATGAACAGTCATATGTTGGTTTCATCGGAGATTGATATAGGATTAAACAAATCCAACATCGAAAGACCACCTGGAAGCAAGAAGAGAACCAAGCATTTACCTTGTGAAGTTCCACTTGCTGAATCTGCTGATCGCATACTTGAGCCTCAGGATTATTTGAATTTCACTCGGTTTTCGTTAGGCTTTGTAGAGACTGAGACATATGATAACCCTAGGTTTGGAGGGCATCAAACACTCAGTGAAAGAGAGAGATCTTACTCTGCAGTAAATCAGACAATTCACTGTGGTTTTGTCAAAGGAACTGGATTTGATTTGAGCGAAAAGGATAGGGCCTATATGAAGAACTGTGTAGTCTCTGTGTCTTCTTGCATTTTTGGAAGCTCTGATTTTCTAAGGAGACCTGCAACCAAAAAGATTAGTGAGTTTTCGAAGCGAAATGTTTGCTTTGTGATGTTTGTTGATGAGCAAACGCTATCGAAACTGGCTAGTGAAGGGCATGTTCCTGACAAGCAAGGATTTGTTGGTTTGTGGAAAACTGTAGTAGTGAGCAATTTGCCTTATAATGATATGCGAAAGACTGGCAAGGTTCCGAAATTTCTGTCACACCGCCTTTTTCCTTCTTCTAGGTATTCAATTTGGCTAGATAGTAAGATGAGACTCACTACAGATCCTATGCTGATCATTGACTTCTTCTTATGGAGAACAAAATCAGAATTCGCTATCTCCAACCATTATGACCGGCATTGTGTGTGGGATGAAGTGTTACAGAACAAACGGCTGAATAAGTACAACCATTCGGCCATTGATGAACAGTTTATGTTTTACCGATCAGATGGTCTCAAGAAATTTGATCCTTCAGATCCTAATTCTCCTCTTCCAAGTTATGTACCGGAAGGTTCTTTTATTGTAAGGGCTCATACACCAATGTCAAACCTCTTCACTTGCCTTTGGTTCAATGAAGTTGATCGGTTTACCTCACGAGATCAGTTGAGTTTTGCATACACATACCTTAAACTTCAGAGACTGAATTCGGATAGACCCTTGCGCCTAAACATGTTCAAGGATTGTGAGCGTCGAGCATTAACTAAGCTCTTCCACCATCGCGTAGATTCATCGCCTCCTTCACCTCCTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF616

Protein Analysis

460

Amino Acids

53.46

Weight (kDa)

9.38

Isoelectric Point (pI)

54.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TOD1_MUCI70 PF04765 147 - 449 5.1e-138 TOD1/MUCI70, glycosyltransferase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 807
Acc36I ACCTGC 1 cut(s) 655
AccII CGCG 1 cut(s) 1350
AciI CCGC 1 cut(s) 853
AclWI GGATC 3 cut(s) 908, 1091, 1100
AcoI YGGCCR 2 cut(s) 187, 1044
AcsI RAATTY 5 cut(s) 406, 839, 959, 1091, 1273
AcuI CTGAAG 2 cut(s) 1086, 1247
AdeI CACNNNGTG 1 cut(s) 485
AfaI GTAC 2 cut(s) 1034, 1134
AfiI CCNNNNNNNGG 1 cut(s) 464
AflIII ACRYGT 1 cut(s) 1299
AgsI TTSAA 5 cut(s) 127, 406, 879, 1201, 1306
AjnI CCWGG 1 cut(s) 316
AluBI AGCT 3 cut(s) 130, 627, 1336
AluI AGCT 3 cut(s) 130, 627, 1336
Alw26I GTCTC 7 cut(s) 431, 437, 604, 637, 895, 1088, 1261
AlwI GGATC 3 cut(s) 908, 1091, 1100
AlwNI CAGNNNCTG 1 cut(s) 1270
AoxI GGCC 3 cut(s) 187, 576, 1044
ApoI RAATTY 5 cut(s) 406, 839, 959, 1091, 1273
ArsI GACNNNNNNTTYG 2 cut(s) 830, 862
AspA2I CCTAGG 1 cut(s) 458
AspLEI GCGC 1 cut(s) 1293
AspS9I GGNCC 1 cut(s) 576
AsuHPI GGTGA 1 cut(s) 1362
AsuII TTCGAA 1 cut(s) 674
AvrII CCTAGG 1 cut(s) 458
AxyI CCTNAGG 1 cut(s) 393
BalI TGGCCA 1 cut(s) 189
BanII GRGCYC 1 cut(s) 1162
BauI CACGAG 1 cut(s) 1224
BbsI GAAGAC 1 cut(s) 600
BccI CCATC 3 cut(s) 64, 1073, 1353
BceAI ACGGC 1 cut(s) 1037
BcgI CGANNNNNNTGC 2 cut(s) 669, 703
BciT130I CCWGG 1 cut(s) 318
BclI TGATCA 1 cut(s) 924
BcoDI GTCTC 7 cut(s) 431, 437, 604, 637, 895, 1088, 1261
BfaI CTAG 4 cut(s) 459, 732, 870, 887
BfmI CTRYAG 3 cut(s) 507, 783, 909
BfuAI ACCTGC 1 cut(s) 655
BglII AGATCT 1 cut(s) 497
BlnI CCTAGG 1 cut(s) 458
Bme1390I CCNGG 1 cut(s) 318
BmgT120I GGNCC 1 cut(s) 576
BmiI GGNNCC 1 cut(s) 834
BmrFI CCNGG 1 cut(s) 318
BmsI GCATC 1 cut(s) 481
BpiI GAAGAC 1 cut(s) 600
Bpu14I TTCGAA 1 cut(s) 674
BpuEI CTTGAG 2 cut(s) 407, 1070
BsaI GGTCTC 2 cut(s) 637, 1088
BsaJI CCNNGG 1 cut(s) 458
BsaWI WCCGGW 2 cut(s) 7, 1135
Bsc4I CCNNNNNNNGG 1 cut(s) 464
Bse118I RCCGGY 1 cut(s) 984
Bse1I ACTGG 3 cut(s) 553, 732, 829
Bse21I CCTNAGG 1 cut(s) 393
BseBI CCWGG 1 cut(s) 318
BseDI CCNNGG 1 cut(s) 458
BseGI GGATG 1 cut(s) 1006
BseLI CCNNNNNNNGG 1 cut(s) 464
BseMII CTCAG 4 cut(s) 204, 407, 432, 496
BseNI ACTGG 3 cut(s) 553, 732, 829
BseRI GAGGAG 1 cut(s) 1107
Bsh1236I CGCG 1 cut(s) 1350
BshFI GGCC 3 cut(s) 189, 578, 1046
BsiSI CCGG 3 cut(s) 8, 985, 1136
BslI CCNNNNNNNGG 1 cut(s) 464
BsmAI GTCTC 7 cut(s) 431, 437, 604, 637, 895, 1088, 1261
BsnI GGCC 3 cut(s) 189, 578, 1046
Bso31I GGTCTC 2 cut(s) 637, 1088
Bsp119I TTCGAA 1 cut(s) 674
Bsp1286I GDGCHC 1 cut(s) 1162
Bsp143I GATC 9 cut(s) 376, 497, 913, 924, 1073, 1096, 1105, 1210, 1228
BspACI CCGC 1 cut(s) 853
BspANI GGCC 3 cut(s) 189, 578, 1046
BspCNI CTCAG 4 cut(s) 205, 406, 433, 495
BspFNI CGCG 1 cut(s) 1350
BspLI GGNNCC 1 cut(s) 834
BspMAI CTGCAG 1 cut(s) 511
BspMI ACCTGC 1 cut(s) 655
BspPI GGATC 3 cut(s) 908, 1091, 1100
BspQI GCTCTTC 1 cut(s) 1343
BspT104I TTCGAA 1 cut(s) 674
BspTNI GGTCTC 2 cut(s) 637, 1088
BsrFI RCCGGY 1 cut(s) 984
BsrI ACTGG 3 cut(s) 553, 732, 829
BssAI RCCGGY 1 cut(s) 984
BssECI CCNNGG 1 cut(s) 458
BssMI GATC 9 cut(s) 376, 497, 913, 924, 1073, 1096, 1105, 1210, 1228
BssSI CACGAG 1 cut(s) 1224
BssT1I CCWWGG 1 cut(s) 458
Bst2BI CACGAG 1 cut(s) 1224
Bst2UI CCWGG 1 cut(s) 318
Bst4CI ACNGT 6 cut(s) 25, 254, 530, 593, 784, 1059
Bst6I CTCTTC 4 cut(s) 323, 1125, 1187, 1343
BstBI TTCGAA 1 cut(s) 674
BstDEI CTNAG 6 cut(s) 213, 393, 441, 482, 638, 1332
BstF5I GGATG 1 cut(s) 1006
BstFNI CGCG 1 cut(s) 1350
BstHHI GCGC 1 cut(s) 1293
BstKTI GATC 9 cut(s) 379, 500, 916, 927, 1076, 1099, 1108, 1213, 1231
BstMAI GTCTC 7 cut(s) 431, 437, 604, 637, 895, 1088, 1261
BstMBI GATC 9 cut(s) 376, 497, 913, 924, 1073, 1096, 1105, 1210, 1228
BstMWI GCNNNNNNNGC 1 cut(s) 371
BstNI CCWGG 1 cut(s) 318
BstNSI RCATGY 3 cut(s) 181, 746, 1303
BstSCI CCNGG 1 cut(s) 316
BstSFI CTRYAG 3 cut(s) 507, 783, 909
BstUI CGCG 1 cut(s) 1350
BstV2I GAAGAC 1 cut(s) 600
BstX2I RGATCY 3 cut(s) 497, 913, 1105
BstYI RGATCY 3 cut(s) 497, 913, 1105
Bsu36I CCTNAGG 1 cut(s) 393
BsuRI GGCC 3 cut(s) 189, 578, 1046
BtgZI GCGATG 2 cut(s) 1331, 1344
BtsCI GGATG 1 cut(s) 1006
BtsIMutI CAGTG 2 cut(s) 490, 526
BveI ACCTGC 1 cut(s) 655
CaiI CAGNNNCTG 1 cut(s) 1270
CfoI GCGC 1 cut(s) 1293
Cfr10I RCCGGY 1 cut(s) 984
Cfr13I GGNCC 1 cut(s) 576
CseI GACGC 1 cut(s) 1307
Csp6I GTAC 2 cut(s) 1033, 1133
CviAII CATG 5 cut(s) 178, 206, 247, 743, 1300
CviQI GTAC 2 cut(s) 1033, 1133
DdeI CTNAG 6 cut(s) 213, 393, 441, 482, 638, 1332
DpnI GATC 9 cut(s) 378, 499, 915, 926, 1075, 1098, 1107, 1212, 1230
DpnII GATC 9 cut(s) 376, 497, 913, 924, 1073, 1096, 1105, 1210, 1228
DraIII CACNNNGTG 1 cut(s) 485
EaeI YGGCCR 2 cut(s) 187, 1044
Eam1104I CTCTTC 4 cut(s) 323, 1125, 1187, 1343
EarI CTCTTC 4 cut(s) 323, 1125, 1187, 1343
Eco130I CCWWGG 1 cut(s) 458
Eco24I GRGCYC 1 cut(s) 1162
Eco31I GGTCTC 2 cut(s) 637, 1088
Eco57I CTGAAG 2 cut(s) 1086, 1247
Eco81I CCTNAGG 1 cut(s) 393
EcoO109I RGGNCCY 1 cut(s) 576
EcoRI GAATTC 2 cut(s) 959, 1273
EcoRII CCWGG 1 cut(s) 316
EcoT14I CCWWGG 1 cut(s) 458
EcoT38I GRGCYC 1 cut(s) 1162
ErhI CCWWGG 1 cut(s) 458
FaeI CATG 5 cut(s) 181, 209, 250, 746, 1303
FalI AAGNNNNNCTT 2 cut(s) 345, 377
FatI CATG 5 cut(s) 177, 205, 246, 742, 1299
FauNDI CATATG 2 cut(s) 258, 448
FbaI TGATCA 1 cut(s) 924
FokI GGATG 1 cut(s) 1013
FriOI GRGCYC 1 cut(s) 1162
FspBI CTAG 4 cut(s) 459, 732, 870, 887
GlaI GCGC 1 cut(s) 1292
HaeIII GGCC 3 cut(s) 189, 578, 1046
HapII CCGG 3 cut(s) 8, 985, 1136
HgaI GACGC 1 cut(s) 1307
HhaI GCGC 1 cut(s) 1293
Hin1II CATG 5 cut(s) 181, 209, 250, 746, 1303
Hin6I GCGC 1 cut(s) 1291
HinP1I GCGC 1 cut(s) 1291
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 4 cut(s) 52, 368, 903, 1355
HpaII CCGG 3 cut(s) 8, 985, 1136
HphI GGTGA 1 cut(s) 1362
Hpy166II GTNNAC 1 cut(s) 1218
Hpy188III TCNNGA 4 cut(s) 395, 749, 1087, 1224
Hpy8I GTNNAC 1 cut(s) 1218
Hpy99I CGWCG 1 cut(s) 1323
HpyAV CCTTC 5 cut(s) 731, 873, 1110, 1133, 1377
HpyCH4III ACNGT 6 cut(s) 25, 254, 530, 593, 784, 1059
HpyCH4V TGCA 5 cut(s) 177, 509, 615, 650, 1244
HpyF10VI GCNNNNNNNGC 1 cut(s) 371
HpyF3I CTNAG 6 cut(s) 213, 393, 441, 482, 638, 1332
Hsp92II CATG 5 cut(s) 181, 209, 250, 746, 1303
HspAI GCGC 1 cut(s) 1291
Ksp22I TGATCA 1 cut(s) 924
Kzo9I GATC 9 cut(s) 376, 497, 913, 924, 1073, 1096, 1105, 1210, 1228
LguI GCTCTTC 1 cut(s) 1343
LweI GCATC 1 cut(s) 481
MaeI CTAG 4 cut(s) 459, 732, 870, 887
MaeIII GTNAC 5 cut(s) 3, 62, 156, 846, 1008
MalI GATC 9 cut(s) 378, 499, 915, 926, 1075, 1098, 1107, 1212, 1230
MboI GATC 9 cut(s) 376, 497, 913, 924, 1073, 1096, 1105, 1210, 1228
MflI RGATCY 3 cut(s) 497, 913, 1105
MhlI GDGCHC 1 cut(s) 1162
MlsI TGGCCA 1 cut(s) 189
MluNI TGGCCA 1 cut(s) 189
MlyI GAGTC 1 cut(s) 897
MmeI TCCRAC 2 cut(s) 324, 996
MnlI CCTC 9 cut(s) 89, 234, 402, 461, 1128, 1190, 1231, 1374, 1383
Mox20I TGGCCA 1 cut(s) 189
MscI TGGCCA 1 cut(s) 189
MseI TTAA 3 cut(s) 290, 1257, 1328
Msp20I TGGCCA 1 cut(s) 189
MspI CCGG 3 cut(s) 8, 985, 1136
MspR9I CCNGG 1 cut(s) 318
MvaI CCWGG 1 cut(s) 318
MvnI CGCG 1 cut(s) 1350
MwoI GCNNNNNNNGC 1 cut(s) 371
NdeI CATATG 2 cut(s) 258, 448
NdeII GATC 9 cut(s) 376, 497, 913, 924, 1073, 1096, 1105, 1210, 1228
NlaIII CATG 5 cut(s) 181, 209, 250, 746, 1303
NlaIV GGNNCC 1 cut(s) 834
NmuCI GTSAC 3 cut(s) 62, 156, 846
NspI RCATGY 3 cut(s) 181, 746, 1303
NspV TTCGAA 1 cut(s) 674
PciI ACATGT 1 cut(s) 1299
PciSI GCTCTTC 1 cut(s) 1343
PfeI GAWTC 3 cut(s) 52, 368, 1355
PleI GAGTC 1 cut(s) 897
PpsI GAGTC 1 cut(s) 897
PscI ACATGT 1 cut(s) 1299
PsiI TTATAA 1 cut(s) 807
Psp6I CCWGG 1 cut(s) 316
PspGI CCWGG 1 cut(s) 316
PspN4I GGNNCC 1 cut(s) 834
PspPI GGNCC 1 cut(s) 576
PstI CTGCAG 1 cut(s) 511
PstNI CAGNNNCTG 1 cut(s) 1270
PsuI RGATCY 3 cut(s) 497, 913, 1105
RsaI GTAC 2 cut(s) 1034, 1134
RsaNI GTAC 2 cut(s) 1033, 1133
SapI GCTCTTC 1 cut(s) 1343
SaqAI TTAA 3 cut(s) 290, 1257, 1328
Sau3AI GATC 9 cut(s) 376, 497, 913, 924, 1073, 1096, 1105, 1210, 1228
Sau96I GGNCC 1 cut(s) 576
SchI GAGTC 1 cut(s) 897
ScrFI CCNGG 1 cut(s) 318
SduI GDGCHC 1 cut(s) 1162
SfaNI GCATC 1 cut(s) 481
SfcI CTRYAG 3 cut(s) 507, 783, 909
SfuI TTCGAA 1 cut(s) 674
SmlI CTYRAG 2 cut(s) 386, 1085
SmoI CTYRAG 2 cut(s) 386, 1085
SsiI CCGC 1 cut(s) 853
SspMI CTAG 4 cut(s) 459, 732, 870, 887
StyD4I CCNGG 1 cut(s) 316
StyI CCWWGG 1 cut(s) 458
TaaI ACNGT 6 cut(s) 25, 254, 530, 593, 784, 1059
TaqI TCGA 4 cut(s) 306, 674, 722, 1321
TatI WGTACW 1 cut(s) 1032
TfiI GAWTC 3 cut(s) 52, 368, 1355
Tru1I TTAA 3 cut(s) 290, 1257, 1328
Tru9I TTAA 3 cut(s) 290, 1257, 1328
TscAI CASTG 2 cut(s) 490, 533
TseFI GTSAC 3 cut(s) 62, 156, 846
Tsp45I GTSAC 3 cut(s) 62, 156, 846
TspDTI ATGAA 9 cut(s) 33, 194, 258, 263, 599, 1017, 1068, 1218, 1347
TspRI CASTG 2 cut(s) 490, 533
XapI RAATTY 5 cut(s) 406, 839, 959, 1091, 1273
XceI RCATGY 3 cut(s) 181, 746, 1303
XmaJI CCTAGG 1 cut(s) 458
XspI CTAG 4 cut(s) 459, 732, 870, 887
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.