Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0005812

Physical Location & Seq

Genomic Coordinates Forward (+)

4134419 .. 4137168

Gene Structure 2750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g06430.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1455 bp

ATGGTAAAAAGTGAAAAAAAAAGATCTCCGACCAGGAAAACCCGCCATGAAAACAGCTCCATAGACGACGGTGGCGAATCGCTGTTGCCGGAGGAGATGAGGAGAGGTATAATCGGCGCGTTGTTGAAGTATCAGGGTGAGCACGGCACTCGCCTTGTTCGCAAAGGAAGGAGGCTAGGTCGAATCGCCAGGAACAAATTCTGGTTCTGGGTTTTTCTCTTTGCAGCCATTTTTTTTATTCACTTGCTGCTCGTCGGCTTCAAAATGCATCCTCCTGCTAAACTAGAAGGTAGTGGTAGTAGTATTAGTATTTCGGTTCACCCAGAAATTTTGCCGTCTGGTGTTGGAAAACCACCCAGAAGCAAGCGTCGTGCCAAGTATTTGCCTTGTGAAGTTGGGTTACTGGAATCAGTTGAGTATCTTGTTGAACCCAGGGAAGTCAGGAACTTCACATATTTTTCACTGGAATACATTGACCAAGAGGGATTACCTTCTCGTAGTAATATGTACGAACCTAGATTTGGAGGGCATCAGACACTTGAGGAAAGAGAGCAATCCTTCTTTGCGAAAAATCAAACTCTGCATTGTGGATTTGTCAAGGGACCCCTGGGATTCTCAAGCTCTGGATTTGATTTACACGTTAAGGACAAGGCATACATGAATGGCTGTAAGATTGTAGTATCTTCTTGCATTTTCGGAAGCTCTGACTTTCTAAGGAGGCCTACAACCAAAAAGATGAGCGAATATTCCAAGAAAAATGTTTGTTTTGTAATGTTTGTGGATGAGCAAACATTGGCAAAACTATCAACAGAGGGACATGTTCCTGATGATACAGGACGAATTGGCTTGTGGAGGATAGTCATAGTGAAGAATTTACCATATGAGGATATGCGCAGAACTGGAAAGGTGCCAAAACTTTTATCACATCGCCTTTTCCCCAATTCATGGTATTCCATTTGGCTTGACAGCAAGATGCGACTCAATACTGATCCGATGCTGATTATTGAATACTTTTTATGGCGCACAAAATCAGAGTATGCCATTTCCAACCATTATGGTCGCCATTGTGTCTGGGACGAGGTACTCCAAAACAAGCGTCTAGATAAGTACAATCACACAGCTATTGATGAACAGTTTACATTTTACCAGTCTGATGGCCTCACCAAGTTTGACCCTTCAGACCCGAATACTCCTCTTCCAAGTTACGTTCCTGAAGGTTCATTTATAGTCCGGGCACATACACCAATTTCAAATTTGTTTTCCTGCCTTTGGTTTAATGAAGTTAACAGGTTTACCTCCCGTGATCAACTAAGCTTCGCATATACTTACCTAAAATTGAGAAGAATGAACCCAGAGAGACCATTCTACCTAAACATGTTCAAGGACTGTGAACGTAGAGCACTAACGAAGCTATTCCAGCACAGGGAAGCACCGCCTTCTCCACCCATTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF616

Protein Analysis

485

Amino Acids

56.26

Weight (kDa)

9.51

Isoelectric Point (pI)

54.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02910 AT2G02910
fragaria_vesca	FvH4_4g31480 FvH4_4g31480 FvH4_4g31480 FvH4_4g31480 FvH4_4g31480 FvH4_4g31480 FvH4_4g31480 FvH4_4g31480 FvH4_4g31480 FvH4_4g31480 FvH4_4g31480
malus_domestica	MD16G1074300.v1.1
prunus_persica	Prupe.1G273000_v2.0.a1
pyrus_communis	pycom16g06430
rosa_chinensis	RchiOBHm_Chr4g0439971
rosa_laevigata	RLG00000006219
rosa_multiflora	Rmu_sc0006000.1_g000005
rosa_roxburghii	Rroxscaffold_5G00380920
rosa_rugosa	Rorug04G0322700 Rorug04G0322800 Rorug04G0322800
rosa_samantha	Rh4AG373900 Rh4BG386200 Rh4CG400700 Rh4DG380500
rosa_wichuraiana	Rw4G031980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	893
AccB1I	GGYRCC	1 cut(s)	907
AccB7I	CCANNNNNTGG	1 cut(s)	945
AccII	CGCG	1 cut(s)	119
AciI	CCGC	2 cut(s)	43, 1433
AclWI	GGATC	1 cut(s)	983
AcsI	RAATTY	4 cut(s)	197, 327, 871, 1252
AcuI	CTGAAG	2 cut(s)	1161, 1233
AfaI	GTAC	3 cut(s)	509, 1083, 1109
AfiI	CCNNNNNNNGG	4 cut(s)	521, 945, 1269, 1423
AflIII	ACRYGT	3 cut(s)	637, 817, 1374
AgsI	TTSAA	6 cut(s)	127, 262, 428, 1007, 1251, 1381
AjnI	CCWGG	4 cut(s)	32, 188, 431, 606
AjuI	GAANNNNNNNTTGG	2 cut(s)	504, 536
AluBI	AGCT	6 cut(s)	57, 621, 702, 1121, 1314, 1411
AluI	AGCT	6 cut(s)	57, 621, 702, 1121, 1314, 1411
Alw21I	GWGCWC	2 cut(s)	144, 1402
Alw26I	GTCTC	1 cut(s)	1351
AlwI	GGATC	1 cut(s)	983
AoxI	GGCC	2 cut(s)	719, 1156
ApeKI	GCWGC	2 cut(s)	224, 247
ApoI	RAATTY	4 cut(s)	197, 327, 871, 1252
ArsI	GACNNNNNNTTYG	2 cut(s)	1081, 1113
Asp700I	GAANNNNTTC	2 cut(s)	197, 1412
AspLEI	GCGC	3 cut(s)	119, 894, 1023
AspS9I	GGNCC	1 cut(s)	602
AsuC2I	CCSGG	1 cut(s)	1232
AsuHPI	GGTGA	3 cut(s)	149, 311, 1153
AvaII	GGWCC	1 cut(s)	602
BaeGI	GKGCMC	1 cut(s)	1237
BanI	GGYRCC	1 cut(s)	907
BarI	GAAGNNNNNNTAC	2 cut(s)	384, 416
Bbv12I	GWGCWC	2 cut(s)	144, 1402
BbvI	GCAGC	2 cut(s)	234, 236
BccI	CCATC	1 cut(s)	1148
BceAI	ACGGC	2 cut(s)	160, 319
BcgI	CGANNNNNNTGC	2 cut(s)	131, 165
BciT130I	CCWGG	4 cut(s)	34, 190, 433, 608
BclI	TGATCA	1 cut(s)	1303
BcnI	CCSGG	1 cut(s)	1232
BcoDI	GTCTC	1 cut(s)	1351
BfaI	CTAG	4 cut(s)	176, 284, 516, 1100
BglII	AGATCT	1 cut(s)	23
BisI	GCNGC	2 cut(s)	225, 248
BlsI	GCNGC	2 cut(s)	226, 249
Bme1390I	CCNGG	5 cut(s)	34, 190, 433, 608, 1232
Bme18I	GGWCC	1 cut(s)	602
BmgT120I	GGNCC	1 cut(s)	602
BmiI	GGNNCC	3 cut(s)	603, 604, 909
BmrFI	CCNGG	5 cut(s)	34, 190, 433, 608, 1232
BmsI	GCATC	4 cut(s)	277, 538, 963, 984
BpuEI	CTTGAG	2 cut(s)	560, 601
BpuMI	CCSGG	1 cut(s)	1232
BsaI	GGTCTC	1 cut(s)	1351
BsaJI	CCNNGG	4 cut(s)	431, 432, 606, 607
BsaXI	ACNNNNNCTCC	2 cut(s)	163, 193
Bsc4I	CCNNNNNNNGG	4 cut(s)	521, 945, 1269, 1423
Bse1I	ACTGG	4 cut(s)	408, 468, 904, 1147
BseBI	CCWGG	4 cut(s)	34, 190, 433, 608
BseDI	CCNNGG	4 cut(s)	431, 432, 606, 607
BseGI	GGATG	2 cut(s)	268, 787
BseLI	CCNNNNNNNGG	4 cut(s)	521, 945, 1269, 1423
BseNI	ACTGG	4 cut(s)	408, 468, 904, 1147
BseRI	GAGGAG	3 cut(s)	107, 115, 1182
BseSI	GKGCMC	1 cut(s)	1237
BseXI	GCAGC	2 cut(s)	234, 236
Bsh1236I	CGCG	1 cut(s)	119
BshFI	GGCC	2 cut(s)	721, 1158
BshNI	GGYRCC	1 cut(s)	907
BsiHKAI	GWGCWC	2 cut(s)	144, 1402
BsiSI	CCGG	2 cut(s)	89, 1231
BslFI	GGGAC	3 cut(s)	615, 828, 1088
BslI	CCNNNNNNNGG	4 cut(s)	521, 945, 1269, 1423
BsmAI	GTCTC	1 cut(s)	1351
BsmFI	GGGAC	3 cut(s)	615, 828, 1088
BsnI	GGCC	2 cut(s)	721, 1158
Bso31I	GGTCTC	1 cut(s)	1351
Bsp1286I	GDGCHC	3 cut(s)	144, 1237, 1402
Bsp143I	GATC	3 cut(s)	23, 988, 1303
BspACI	CCGC	2 cut(s)	43, 1433
BspANI	GGCC	2 cut(s)	721, 1158
BspFNI	CGCG	1 cut(s)	119
BspLI	GGNNCC	3 cut(s)	603, 604, 909
BspPI	GGATC	1 cut(s)	983
BspT107I	GGYRCC	1 cut(s)	907
BspTNI	GGTCTC	1 cut(s)	1351
BsrI	ACTGG	4 cut(s)	408, 468, 904, 1147
BssECI	CCNNGG	4 cut(s)	431, 432, 606, 607
BssMI	GATC	3 cut(s)	23, 988, 1303
Bst2UI	CCWGG	4 cut(s)	34, 190, 433, 608
Bst4CI	ACNGT	3 cut(s)	71, 1134, 1388
Bst6I	CTCTTC	1 cut(s)	1200
BstC8I	GCNNGC	1 cut(s)	365
BstDEI	CTNAG	2 cut(s)	713, 1310
BstF5I	GGATG	2 cut(s)	268, 787
BstFNI	CGCG	1 cut(s)	119
BstHHI	GCGC	3 cut(s)	119, 894, 1023
BstKTI	GATC	3 cut(s)	26, 991, 1306
BstMAI	GTCTC	1 cut(s)	1351
BstMBI	GATC	3 cut(s)	23, 988, 1303
BstMWI	GCNNNNNNNGC	2 cut(s)	159, 1417
BstNI	CCWGG	4 cut(s)	34, 190, 433, 608
BstNSI	RCATGY	2 cut(s)	821, 1378
BstSCI	CCNGG	5 cut(s)	32, 188, 431, 606, 1230
BstSLI	GKGCMC	1 cut(s)	1237
BstUI	CGCG	1 cut(s)	119
BstV1I	GCAGC	2 cut(s)	234, 236
BstX2I	RGATCY	1 cut(s)	23
BstXI	CCANNNNNNTGG	1 cut(s)	1154
BstYI	RGATCY	1 cut(s)	23
BsuRI	GGCC	2 cut(s)	721, 1158
BtgZI	GCGATG	1 cut(s)	911
BtsCI	GGATG	2 cut(s)	268, 787
BtsIMutI	CAGTG	1 cut(s)	461
Cac8I	GCNNGC	1 cut(s)	365
CfoI	GCGC	3 cut(s)	119, 894, 1023
Cfr13I	GGNCC	1 cut(s)	602
CseI	GACGC	2 cut(s)	356, 1085
Csp6I	GTAC	3 cut(s)	508, 1082, 1108
CviAII	CATG	5 cut(s)	47, 658, 818, 945, 1375
CviQI	GTAC	3 cut(s)	508, 1082, 1108
DdeI	CTNAG	2 cut(s)	713, 1310
DpnI	GATC	3 cut(s)	25, 990, 1305
DpnII	GATC	3 cut(s)	23, 988, 1303
Eam1104I	CTCTTC	1 cut(s)	1200
EarI	CTCTTC	1 cut(s)	1200
Eco147I	AGGCCT	1 cut(s)	721
Eco31I	GGTCTC	1 cut(s)	1351
Eco47I	GGWCC	1 cut(s)	602
Eco57I	CTGAAG	2 cut(s)	1161, 1233
EcoO109I	RGGNCCY	1 cut(s)	602
EcoRII	CCWGG	4 cut(s)	32, 188, 431, 606
EcoT22I	ATGCAT	1 cut(s)	270
FaeI	CATG	5 cut(s)	50, 661, 821, 948, 1378
FaqI	GGGAC	3 cut(s)	615, 828, 1088
FatI	CATG	5 cut(s)	46, 657, 817, 944, 1374
FauI	CCCGC	1 cut(s)	50
FauNDI	CATATG	1 cut(s)	880
FbaI	TGATCA	1 cut(s)	1303
Fnu4HI	GCNGC	2 cut(s)	225, 248
FokI	GGATG	2 cut(s)	255, 794
Fsp4HI	GCNGC	2 cut(s)	225, 248
FspBI	CTAG	4 cut(s)	176, 284, 516, 1100
FspI	TGCGCA	1 cut(s)	893
GlaI	GCGC	3 cut(s)	118, 893, 1022
GluI	GCNGC	2 cut(s)	225, 248
HaeIII	GGCC	2 cut(s)	721, 1158
HapII	CCGG	2 cut(s)	89, 1231
HgaI	GACGC	2 cut(s)	356, 1085
HhaI	GCGC	3 cut(s)	119, 894, 1023
Hin1II	CATG	5 cut(s)	50, 661, 821, 948, 1378
Hin6I	GCGC	3 cut(s)	117, 892, 1021
HinP1I	GCGC	3 cut(s)	117, 892, 1021
HincII	GTYRAC	1 cut(s)	1285
HindII	GTYRAC	1 cut(s)	1285
HindIII	AAGCTT	1 cut(s)	1312
HinfI	GANTC	5 cut(s)	77, 183, 407, 612, 978
HpaI	GTTAAC	1 cut(s)	1285
HpaII	CCGG	2 cut(s)	89, 1231
HphI	GGTGA	3 cut(s)	149, 311, 1153
Hpy166II	GTNNAC	5 cut(s)	319, 1137, 1285, 1293, 1391
Hpy188I	TCNGA	8 cut(s)	30, 534, 698, 706, 993, 1033, 1153, 1180
Hpy188III	TCNNGA	5 cut(s)	442, 624, 824, 1100, 1211
Hpy8I	GTNNAC	5 cut(s)	319, 1137, 1285, 1293, 1391
Hpy99I	CGWCG	3 cut(s)	71, 257, 372
HpyAV	CCTTC	7 cut(s)	162, 281, 501, 568, 1185, 1208, 1446
HpyCH4III	ACNGT	3 cut(s)	71, 1134, 1388
HpyCH4IV	ACGT	3 cut(s)	639, 1206, 1393
HpyCH4V	TGCA	4 cut(s)	224, 268, 583, 690
HpyF10VI	GCNNNNNNNGC	2 cut(s)	159, 1417
HpyF3I	CTNAG	2 cut(s)	713, 1310
HpySE526I	ACGT	3 cut(s)	639, 1206, 1393
Hsp92II	CATG	5 cut(s)	50, 661, 821, 948, 1378
HspAI	GCGC	3 cut(s)	117, 892, 1021
KflI	GGGWCCC	1 cut(s)	602
Ksp22I	TGATCA	1 cut(s)	1303
KspAI	GTTAAC	1 cut(s)	1285
Kzo9I	GATC	3 cut(s)	23, 988, 1303
LmnI	GCTCC	1 cut(s)	62
Lsp1109I	GCAGC	2 cut(s)	234, 236
LweI	GCATC	4 cut(s)	277, 538, 963, 984
MaeI	CTAG	4 cut(s)	176, 284, 516, 1100
MaeII	ACGT	3 cut(s)	639, 1206, 1393
MaeIII	GTNAC	2 cut(s)	399, 1202
MalI	GATC	3 cut(s)	25, 990, 1305
MboI	GATC	3 cut(s)	23, 988, 1303
MboII	GAAGA	4 cut(s)	675, 880, 1187, 1353
MflI	RGATCY	1 cut(s)	23
MhlI	GDGCHC	3 cut(s)	144, 1237, 1402
MluCI	AATT	8 cut(s)	197, 327, 840, 871, 940, 1245, 1252, 1334
MlyI	GAGTC	1 cut(s)	972
MmeI	TCCRAC	3 cut(s)	53, 325, 1071
Mph1103I	ATGCAT	1 cut(s)	270
MroXI	GAANNNNTTC	2 cut(s)	197, 1412
MseI	TTAA	3 cut(s)	642, 1275, 1284
MspI	CCGG	2 cut(s)	89, 1231
MspR9I	CCNGG	5 cut(s)	34, 190, 433, 608, 1232
MvaI	CCWGG	4 cut(s)	34, 190, 433, 608
MvnI	CGCG	1 cut(s)	119
MwoI	GCNNNNNNNGC	2 cut(s)	159, 1417
NciI	CCSGG	1 cut(s)	1232
NdeI	CATATG	1 cut(s)	880
NdeII	GATC	3 cut(s)	23, 988, 1303
NlaIII	CATG	5 cut(s)	50, 661, 821, 948, 1378
NlaIV	GGNNCC	3 cut(s)	603, 604, 909
NsbI	TGCGCA	1 cut(s)	893
NsiI	ATGCAT	1 cut(s)	270
NspI	RCATGY	2 cut(s)	821, 1378
PasI	CCCWGGG	2 cut(s)	432, 607
PceI	AGGCCT	1 cut(s)	721
PciI	ACATGT	2 cut(s)	817, 1374
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PdmI	GAANNNNTTC	2 cut(s)	197, 1412
PfeI	GAWTC	4 cut(s)	77, 183, 407, 612
PflMI	CCANNNNNTGG	1 cut(s)	945
PkrI	GCNGC	2 cut(s)	226, 249
PleI	GAGTC	1 cut(s)	972
PpsI	GAGTC	1 cut(s)	972
PpuMI	RGGWCCY	1 cut(s)	602
PscI	ACATGT	2 cut(s)	817, 1374
Psp5II	RGGWCCY	1 cut(s)	602
Psp6I	CCWGG	4 cut(s)	32, 188, 431, 606
PspGI	CCWGG	4 cut(s)	32, 188, 431, 606
PspN4I	GGNNCC	3 cut(s)	603, 604, 909
PspPI	GGNCC	1 cut(s)	602
PspPPI	RGGWCCY	1 cut(s)	602
PsuI	RGATCY	1 cut(s)	23
RsaI	GTAC	3 cut(s)	509, 1083, 1109
RsaNI	GTAC	3 cut(s)	508, 1082, 1108
SaqAI	TTAA	3 cut(s)	642, 1275, 1284
SatI	GCNGC	2 cut(s)	225, 248
Sau3AI	GATC	3 cut(s)	23, 988, 1303
Sau96I	GGNCC	1 cut(s)	602
SchI	GAGTC	1 cut(s)	972
ScrFI	CCNGG	5 cut(s)	34, 190, 433, 608, 1232
SduI	GDGCHC	3 cut(s)	144, 1237, 1402
SfaNI	GCATC	4 cut(s)	277, 538, 963, 984
SinI	GGWCC	1 cut(s)	602
SmlI	CTYRAG	2 cut(s)	539, 616
SmoI	CTYRAG	2 cut(s)	539, 616
Sse9I	AATT	8 cut(s)	197, 327, 840, 871, 940, 1245, 1252, 1334
SseBI	AGGCCT	1 cut(s)	721
SsiI	CCGC	2 cut(s)	43, 1433
SspI	AATATT	1 cut(s)	746
SspMI	CTAG	4 cut(s)	176, 284, 516, 1100
StuI	AGGCCT	1 cut(s)	721
StyD4I	CCNGG	5 cut(s)	32, 188, 431, 606, 1230
TaaI	ACNGT	3 cut(s)	71, 1134, 1388
TaiI	ACGT	3 cut(s)	642, 1209, 1396
TaqI	TCGA	1 cut(s)	181
TasI	AATT	8 cut(s)	197, 327, 840, 871, 940, 1245, 1252, 1334
TatI	WGTACW	1 cut(s)	1107
TfiI	GAWTC	4 cut(s)	77, 183, 407, 612
Tru1I	TTAA	3 cut(s)	642, 1275, 1284
Tru9I	TTAA	3 cut(s)	642, 1275, 1284
TscAI	CASTG	1 cut(s)	468
TseI	GCWGC	2 cut(s)	224, 247
TspDTI	ATGAA	7 cut(s)	63, 674, 933, 1143, 1209, 1293, 1361
TspRI	CASTG	1 cut(s)	468
Van91I	CCANNNNNTGG	1 cut(s)	945
VpaK11BI	GGWCC	1 cut(s)	602
XapI	RAATTY	4 cut(s)	197, 327, 871, 1252
XbaI	TCTAGA	1 cut(s)	1099
XceI	RCATGY	2 cut(s)	821, 1378
XmnI	GAANNNNTTC	2 cut(s)	197, 1412
XspI	CTAG	4 cut(s)	176, 284, 516, 1100
Zsp2I	ATGCAT	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.