Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005812

Physical Location & Seq

Genomic Coordinates Forward (+)

49829729 .. 49832568

Gene Structure 2840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0322800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGATGAGGAGGGAGCAGCATCAGGACCAGCAATCTAGGGTTTTCTACGAGCTTTCCGCTCTAGTTCTCAGCCTTCTGCGGTCGCCGCCCACGCCGATTCAATTTTCCGATCAGTCTCCCGCGATTCCGCCGCCGCCGACGAATTCTTCTTCTTCTTCTGTGTCTAGCTCTTCATCCAGGCGGCCGGCGGCGGCGGCGCAGATCTCGCCGGCGGGGTTCGCGTCGCTGATGCTGGGGATTTCGATGGCGCTGATGCTGTGCGGATCGGTGACGTTCTTCATCGGGTTCTTGTTGATGCCTTGGGTGCTCGGGTTGGTTATGGTGTTTTATGTGGCTGGAGTCGTCTCCAGTCTCTCTGTCTTAGGGAAGTCGATTCTTTGTTACGCCCCGCCGCCGCCGCCGCCGTCACCGCGGAAGGAGATTCCGGCAGCTACTATTATGCCAAACTTCCAACCTTCATCCACCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

156

Amino Acids

16.64

Weight (kDa)

9.78

Isoelectric Point (pI)

87.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02910 AT2G02910
fragaria_vesca	FvH4_4g31480 FvH4_4g31480 FvH4_4g31480 FvH4_4g31480 FvH4_4g31480 FvH4_4g31480 FvH4_4g31480 FvH4_4g31480 FvH4_4g31480 FvH4_4g31480 FvH4_4g31480
malus_domestica	MD16G1074300.v1.1
prunus_persica	Prupe.1G273000_v2.0.a1
pyrus_communis	pycom16g06430
rosa_chinensis	RchiOBHm_Chr4g0439971
rosa_laevigata	RLG00000006219
rosa_multiflora	Rmu_sc0006000.1_g000005
rosa_roxburghii	Rroxscaffold_5G00380920
rosa_rugosa	Rorug04G0322700 Rorug04G0322800 Rorug04G0322800
rosa_samantha	Rh4AG373900 Rh4BG386200 Rh4CG400700 Rh4DG380500
rosa_wichuraiana	Rw4G031980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	59
AccII	CGCG	3 cut(s)	122, 221, 412
AclWI	GGATC	1 cut(s)	271
AcoI	YGGCCR	1 cut(s)	182
AcsI	RAATTY	1 cut(s)	142
AgsI	TTSAA	1 cut(s)	101
AjnI	CCWGG	1 cut(s)	176
AluBI	AGCT	3 cut(s)	52, 168, 431
AluI	AGCT	3 cut(s)	52, 168, 431
Alw21I	GWGCWC	1 cut(s)	309
Alw26I	GTCTC	3 cut(s)	120, 349, 356
AlwI	GGATC	1 cut(s)	271
Ama87I	CYCGRG	1 cut(s)	308
AoxI	GGCC	1 cut(s)	182
ApeKI	GCWGC	2 cut(s)	16, 428
ApoI	RAATTY	1 cut(s)	142
AspLEI	GCGC	2 cut(s)	199, 250
AspS9I	GGNCC	1 cut(s)	25
AsuHPI	GGTGA	2 cut(s)	280, 399
AvaI	CYCGRG	1 cut(s)	308
AvaII	GGWCC	1 cut(s)	25
Bbv12I	GWGCWC	1 cut(s)	309
BbvI	GCAGC	2 cut(s)	28, 440
BccI	CCATC	1 cut(s)	238
BceAI	ACGGC	1 cut(s)	388
BciT130I	CCWGG	1 cut(s)	178
BcoDI	GTCTC	3 cut(s)	120, 349, 356
BfaI	CTAG	3 cut(s)	36, 62, 165
BfoI	RGCGCY	1 cut(s)	251
BglII	AGATCT	1 cut(s)	201
Bme1390I	CCNGG	1 cut(s)	178
Bme18I	GGWCC	1 cut(s)	25
BmeT110I	CYCGRG	1 cut(s)	308
BmgT120I	GGNCC	1 cut(s)	25
BmrFI	CCNGG	1 cut(s)	178
BmsI	GCATC	4 cut(s)	28, 219, 243, 285
BpmI	CTGGAG	2 cut(s)	331, 357
BsaJI	CCNNGG	2 cut(s)	299, 410
Bse118I	RCCGGY	2 cut(s)	184, 208
Bse1I	ACTGG	1 cut(s)	348
BseBI	CCWGG	1 cut(s)	178
BseDI	CCNNGG	2 cut(s)	299, 410
BseGI	GGATG	2 cut(s)	173, 458
BseMII	CTCAG	1 cut(s)	82
BseNI	ACTGG	1 cut(s)	348
BseRI	GAGGAG	1 cut(s)	22
BseX3I	CGGCCG	1 cut(s)	182
BseXI	GCAGC	2 cut(s)	28, 440
BseYI	CCCAGC	1 cut(s)	232
Bsh1236I	CGCG	3 cut(s)	122, 221, 412
Bsh1285I	CGRYCG	2 cut(s)	83, 185
BshFI	GGCC	1 cut(s)	184
BsiEI	CGRYCG	2 cut(s)	83, 185
BsiHKAI	GWGCWC	1 cut(s)	309
BsiHKCI	CYCGRG	1 cut(s)	308
BsiSI	CCGG	3 cut(s)	185, 209, 425
BsmAI	GTCTC	3 cut(s)	120, 349, 356
BsmBI	CGTCTC	1 cut(s)	349
BsnI	GGCC	1 cut(s)	184
BsoBI	CYCGRG	1 cut(s)	308
Bsp1286I	GDGCHC	1 cut(s)	309
Bsp143I	GATC	3 cut(s)	109, 201, 263
BspANI	GGCC	1 cut(s)	184
BspCNI	CTCAG	1 cut(s)	81
BspFNI	CGCG	3 cut(s)	122, 221, 412
BspPI	GGATC	1 cut(s)	271
BspQI	GCTCTTC	1 cut(s)	175
BsrBI	CCGCTC	1 cut(s)	59
BsrFI	RCCGGY	2 cut(s)	184, 208
BsrI	ACTGG	1 cut(s)	348
BssAI	RCCGGY	2 cut(s)	184, 208
BssECI	CCNNGG	2 cut(s)	299, 410
BssMI	GATC	3 cut(s)	109, 201, 263
BssT1I	CCWWGG	1 cut(s)	299
Bst2UI	CCWGG	1 cut(s)	178
Bst6I	CTCTTC	1 cut(s)	175
BstC8I	GCNNGC	2 cut(s)	186, 210
BstDEI	CTNAG	2 cut(s)	68, 361
BstDSI	CCRYGG	1 cut(s)	410
BstF5I	GGATG	2 cut(s)	173, 458
BstFNI	CGCG	3 cut(s)	122, 221, 412
BstH2I	RGCGCY	1 cut(s)	251
BstHHI	GCGC	2 cut(s)	199, 250
BstKTI	GATC	3 cut(s)	112, 204, 266
BstMAI	GTCTC	3 cut(s)	120, 349, 356
BstMBI	GATC	3 cut(s)	109, 201, 263
BstMCI	CGRYCG	2 cut(s)	83, 185
BstMWI	GCNNNNNNNGC	9 cut(s)	85, 91, 194, 205, 218, 304, 397, 400, 409
BstNI	CCWGG	1 cut(s)	178
BstSCI	CCNGG	1 cut(s)	176
BstUI	CGCG	3 cut(s)	122, 221, 412
BstV1I	GCAGC	2 cut(s)	28, 440
BstX2I	RGATCY	1 cut(s)	201
BstYI	RGATCY	1 cut(s)	201
BstZI	CGGCCG	1 cut(s)	182
BsuRI	GGCC	1 cut(s)	184
BtgI	CCRYGG	1 cut(s)	410
BtsCI	GGATG	2 cut(s)	173, 458
Cac8I	GCNNGC	2 cut(s)	186, 210
CfoI	GCGC	2 cut(s)	199, 250
Cfr10I	RCCGGY	2 cut(s)	184, 208
Cfr13I	GGNCC	1 cut(s)	25
Cfr42I	CCGCGG	1 cut(s)	413
CseI	GACGC	1 cut(s)	210
CviJI	RGCY	6 cut(s)	52, 72, 168, 184, 335, 431
CviKI_1	RGCY	6 cut(s)	52, 72, 168, 184, 335, 431
DdeI	CTNAG	2 cut(s)	68, 361
DpnI	GATC	3 cut(s)	111, 203, 265
DpnII	GATC	3 cut(s)	109, 201, 263
EaeI	YGGCCR	1 cut(s)	182
EagI	CGGCCG	1 cut(s)	182
Eam1104I	CTCTTC	1 cut(s)	175
EarI	CTCTTC	1 cut(s)	175
EciI	GGCGGA	1 cut(s)	117
EclXI	CGGCCG	1 cut(s)	182
Eco130I	CCWWGG	1 cut(s)	299
Eco47I	GGWCC	1 cut(s)	25
Eco52I	CGGCCG	1 cut(s)	182
Eco88I	CYCGRG	1 cut(s)	308
EcoRI	GAATTC	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	176
EcoT14I	CCWWGG	1 cut(s)	299
ErhI	CCWWGG	1 cut(s)	299
Esp3I	CGTCTC	1 cut(s)	349
FaiI	YATR	3 cut(s)	320, 330, 440
FauI	CCCGC	3 cut(s)	127, 205, 396
FokI	GGATG	2 cut(s)	160, 445
FspBI	CTAG	3 cut(s)	36, 62, 165
GlaI	GCGC	2 cut(s)	198, 249
GsaI	CCCAGC	1 cut(s)	236
GsuI	CTGGAG	2 cut(s)	331, 357
HaeII	RGCGCY	1 cut(s)	251
HaeIII	GGCC	1 cut(s)	184
HapII	CCGG	3 cut(s)	185, 209, 425
HgaI	GACGC	1 cut(s)	210
HhaI	GCGC	2 cut(s)	199, 250
Hin6I	GCGC	2 cut(s)	197, 248
HinP1I	GCGC	2 cut(s)	197, 248
HinfI	GANTC	5 cut(s)	97, 124, 339, 373, 421
HpaII	CCGG	3 cut(s)	185, 209, 425
HphI	GGTGA	2 cut(s)	280, 399
Hpy188I	TCNGA	1 cut(s)	109
Hpy188III	TCNNGA	1 cut(s)	23
Hpy99I	CGWCG	2 cut(s)	142, 226
HpyAV	CCTTC	3 cut(s)	83, 409, 465
HpyCH4IV	ACGT	1 cut(s)	272
HpyF10VI	GCNNNNNNNGC	9 cut(s)	85, 91, 194, 205, 218, 304, 397, 400, 409
HpyF3I	CTNAG	2 cut(s)	68, 361
HpySE526I	ACGT	1 cut(s)	272
HspAI	GCGC	2 cut(s)	197, 248
KroI	GCCGGC	2 cut(s)	184, 208
KroNI	GCCGGC	2 cut(s)	186, 210
KspI	CCGCGG	1 cut(s)	413
Kzo9I	GATC	3 cut(s)	109, 201, 263
LguI	GCTCTTC	1 cut(s)	175
LmnI	GCTCC	1 cut(s)	13
Lsp1109I	GCAGC	2 cut(s)	28, 440
LweI	GCATC	4 cut(s)	28, 219, 243, 285
MaeI	CTAG	3 cut(s)	36, 62, 165
MaeII	ACGT	1 cut(s)	272
MaeIII	GTNAC	3 cut(s)	268, 380, 405
MalI	GATC	3 cut(s)	111, 203, 265
MbiI	CCGCTC	1 cut(s)	59
MboI	GATC	3 cut(s)	109, 201, 263
MboII	GAAGA	6 cut(s)	138, 141, 144, 147, 162, 268
MflI	RGATCY	1 cut(s)	201
MhlI	GDGCHC	1 cut(s)	309
MluCI	AATT	2 cut(s)	101, 142
MlyI	GAGTC	1 cut(s)	348
MnlI	CCTC	1 cut(s)	3
MreI	CGCCGGCG	1 cut(s)	208
MroNI	GCCGGC	2 cut(s)	184, 208
MspA1I	CMGCKG	1 cut(s)	412
MspI	CCGG	3 cut(s)	185, 209, 425
MspR9I	CCNGG	1 cut(s)	178
MvaI	CCWGG	1 cut(s)	178
MvnI	CGCG	3 cut(s)	122, 221, 412
MwoI	GCNNNNNNNGC	9 cut(s)	85, 91, 194, 205, 218, 304, 397, 400, 409
NaeI	GCCGGC	2 cut(s)	186, 210
NdeII	GATC	3 cut(s)	109, 201, 263
NgoMIV	GCCGGC	2 cut(s)	184, 208
NmuCI	GTSAC	2 cut(s)	268, 405
PciSI	GCTCTTC	1 cut(s)	175
PdiI	GCCGGC	2 cut(s)	186, 210
PfeI	GAWTC	4 cut(s)	97, 124, 373, 421
PleI	GAGTC	1 cut(s)	347
PpsI	GAGTC	1 cut(s)	347
Psp6I	CCWGG	1 cut(s)	176
PspFI	CCCAGC	1 cut(s)	232
PspGI	CCWGG	1 cut(s)	176
PspPI	GGNCC	1 cut(s)	25
PsuI	RGATCY	1 cut(s)	201
SacII	CCGCGG	1 cut(s)	413
SapI	GCTCTTC	1 cut(s)	175
Sau3AI	GATC	3 cut(s)	109, 201, 263
Sau96I	GGNCC	1 cut(s)	25
SchI	GAGTC	1 cut(s)	348
ScrFI	CCNGG	1 cut(s)	178
SduI	GDGCHC	1 cut(s)	309
SetI	ASST	5 cut(s)	54, 170, 275, 433, 457
SfaNI	GCATC	4 cut(s)	28, 219, 243, 285
Sfr303I	CCGCGG	1 cut(s)	413
SgrAI	CRCCGGYG	1 cut(s)	208
SgrBI	CCGCGG	1 cut(s)	413
SinI	GGWCC	1 cut(s)	25
Sse9I	AATT	2 cut(s)	101, 142
SspMI	CTAG	3 cut(s)	36, 62, 165
StyD4I	CCNGG	1 cut(s)	176
StyI	CCWWGG	1 cut(s)	299
TaiI	ACGT	1 cut(s)	275
TaqI	TCGA	2 cut(s)	242, 371
TasI	AATT	2 cut(s)	101, 142
TfiI	GAWTC	4 cut(s)	97, 124, 373, 421
TseFI	GTSAC	2 cut(s)	268, 405
TseI	GCWGC	2 cut(s)	16, 428
Tsp45I	GTSAC	2 cut(s)	268, 405
TspDTI	ATGAA	3 cut(s)	162, 268, 447
VpaK11BI	GGWCC	1 cut(s)	25
XapI	RAATTY	1 cut(s)	142
XspI	CTAG	3 cut(s)	36, 62, 165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.