Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006000.1

Orthogroup ID

OG0005812

Physical Location & Seq

Genomic Coordinates Forward (+)

16259 .. 19447

Gene Structure 3189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006000.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

atgggaagaggtctgatcggagcggttctgatgtatcttggtccaagtgagcatggtactcctcgctttgttcgcagaggaagaaggtttagtcgcatttctacacttcaattctcgctctgggtttttgtctttgcagcaatctttctgctttatttcatcttcttcggcctcacaatgttgtctacagatgagaatcatgagattgaagaaagtgcagttattccagtaaaggtagaatcttcgcggactgatggtggaagcaagcgtcgtaggaaatattctccttgcaacgttccgttgaaggaatcagttgattattttaagcaaccccgggaagttatgaactttacacagttttcactagagtacattgaccaagaggaaaaacttcctacaagtgatatatatgaacctagatttggagggcatccgacccttgagggaagagagcagtccttttatgccgtaaatcaaactcttcattgcggatttgtcaacgggcctccagggtcctcaagcactgggtttgatttagatatgaaggacaaggcgtatatgaaggattgtaaggttgcagtatcttcttgcatttttgggagctctgattttctaagaaggcctacaagtagaaagatcagtgactattccaagaaaaatgtttgttttgtaatgtttgtggatgaagaaagcctggcaaaaatatcatccgaggggcattttcctgatgatacaggacatattggcttgtggaggatagttatagtgaagaacttaccatatgcagatatgcggagaactggaaaggtgccaaaacttttatcacatcgcctttttccctcatcatggtattccatttgggttgacagcaagatgcgacttaataccgatccgatgcagattattgaatactttttatggcgagcaaaatcagaatatgccatttccaatcactatgaccggcattgtgtttgggaggaggtgctccaaaataagcgtctaaataagtacaatcacacagtgattgatgagcagttcacattttaccaatctgatggcctcaccaagtttgactcttcagacccaaatactcctcttccaagttatgttcctgaaggttcatttattgtccgtgcacatacacctatttcaaatttattttcatgcctctggtttaatgaagttgaccggtttacctcccgcgatcagcttagctttgcatatactttcttaaaattgaggagaatgaacccagatagaccattctacctaaatatgttcaaggactgtgagcgcagagcactagcaaagctattccggcacagggcagagctgtctccacctgttacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF616

Protein Analysis

450

Amino Acids

52.36

Weight (kDa)

8.92

Isoelectric Point (pI)

55.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02910 AT2G02910
fragaria_vesca	FvH4_4g31480 FvH4_4g31480 FvH4_4g31480 FvH4_4g31480 FvH4_4g31480 FvH4_4g31480 FvH4_4g31480 FvH4_4g31480 FvH4_4g31480 FvH4_4g31480 FvH4_4g31480
malus_domestica	MD16G1074300.v1.1
prunus_persica	Prupe.1G273000_v2.0.a1
pyrus_communis	pycom16g06430
rosa_chinensis	RchiOBHm_Chr4g0439971
rosa_laevigata	RLG00000006219
rosa_multiflora	Rmu_sc0006000.1_g000005
rosa_roxburghii	Rroxscaffold_5G00380920
rosa_rugosa	Rorug04G0322700 Rorug04G0322800 Rorug04G0322800
rosa_samantha	Rh4AG373900 Rh4BG386200 Rh4CG400700 Rh4DG380500
rosa_wichuraiana	Rw4G031980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	808
AccBSI	CCGCTC	1 cut(s)	23
AccI	GTMKAC	1 cut(s)	185
AccII	CGCG	2 cut(s)	247, 1203
AciI	CCGC	5 cut(s)	23, 247, 489, 793, 1201
AclI	AACGTT	1 cut(s)	294
AclWI	GGATC	1 cut(s)	884
AcsI	RAATTY	1 cut(s)	1153
AcuI	CTGAAG	2 cut(s)	1062, 1134
AdeI	CACNNNGTG	1 cut(s)	1021
AfaI	GTAC	3 cut(s)	58, 371, 1010
AfiI	CCNNNNNNNGG	3 cut(s)	422, 846, 1324
AgeI	ACCGGT	1 cut(s)	1188
AgsI	TTSAA	6 cut(s)	110, 209, 304, 908, 1152, 1282
AjnI	CCWGG	2 cut(s)	508, 693
AjuI	GAANNNNNNNTTGG	2 cut(s)	405, 437
AluBI	AGCT	5 cut(s)	603, 1210, 1215, 1312, 1333
AluI	AGCT	5 cut(s)	603, 1210, 1215, 1312, 1333
Alw21I	GWGCWC	4 cut(s)	605, 987, 1138, 1303
Alw26I	GTCTC	1 cut(s)	1341
Alw44I	GTGCAC	1 cut(s)	1134
AlwI	GGATC	1 cut(s)	884
Ama87I	CYCGRG	1 cut(s)	333
AoxI	GGCC	4 cut(s)	169, 503, 620, 1057
ApaLI	GTGCAC	1 cut(s)	1134
ApeKI	GCWGC	1 cut(s)	137
ApoI	RAATTY	1 cut(s)	1153
ArsI	GACNNNNNNTTYG	2 cut(s)	982, 1014
AsiGI	ACCGGT	1 cut(s)	1188
Asp700I	GAANNNNTTC	1 cut(s)	390
AspLEI	GCGC	1 cut(s)	1296
AspS9I	GGNCC	3 cut(s)	41, 503, 513
AsuC2I	CCSGG	2 cut(s)	334, 335
AsuHPI	GGTGA	1 cut(s)	1054
AvaI	CYCGRG	1 cut(s)	333
AvaII	GGWCC	2 cut(s)	41, 513
BaeGI	GKGCMC	1 cut(s)	1138
BanI	GGYRCC	1 cut(s)	808
BanII	GRGCYC	1 cut(s)	605
Bbv12I	GWGCWC	4 cut(s)	605, 987, 1138, 1303
BbvI	GCAGC	1 cut(s)	149
BccI	CCATC	2 cut(s)	248, 1049
BceAI	ACGGC	1 cut(s)	452
BciT130I	CCWGG	2 cut(s)	510, 695
BcnI	CCSGG	2 cut(s)	334, 335
BcoDI	GTCTC	1 cut(s)	1341
BfaI	CTAG	3 cut(s)	365, 417, 1304
BfmI	CTRYAG	1 cut(s)	186
BisI	GCNGC	1 cut(s)	138
BlpI	GCTNAGC	1 cut(s)	1211
BlsI	GCNGC	1 cut(s)	139
Bme1390I	CCNGG	4 cut(s)	334, 335, 510, 695
Bme18I	GGWCC	2 cut(s)	41, 513
BmeT110I	CYCGRG	1 cut(s)	333
BmgT120I	GGNCC	3 cut(s)	41, 503, 513
BmiI	GGNNCC	2 cut(s)	514, 810
BmrFI	CCNGG	4 cut(s)	334, 335, 510, 695
BmrI	ACTGGG	1 cut(s)	534
BmsI	GCATC	3 cut(s)	439, 864, 885
BmuI	ACTGGG	1 cut(s)	534
BpmI	CTGGAG	1 cut(s)	492
Bpu1102I	GCTNAGC	1 cut(s)	1211
BpuEI	CTTGAG	2 cut(s)	461, 502
BpuMI	CCSGG	2 cut(s)	334, 335
BsaBI	GATNNNNATC	1 cut(s)	195
BsaJI	CCNNGG	4 cut(s)	332, 333, 509, 711
BsaWI	WCCGGW	1 cut(s)	1188
Bsc4I	CCNNNNNNNGG	3 cut(s)	422, 846, 1324
Bse118I	RCCGGY	2 cut(s)	960, 1188
Bse1I	ACTGG	3 cut(s)	227, 529, 805
Bse3DI	GCAATG	1 cut(s)	484
Bse8I	GATNNNNATC	1 cut(s)	195
BseBI	CCWGG	2 cut(s)	510, 695
BseDI	CCNNGG	4 cut(s)	332, 333, 509, 711
BseGI	GGATG	3 cut(s)	430, 688, 707
BseJI	GATNNNNATC	1 cut(s)	195
BseLI	CCNNNNNNNGG	3 cut(s)	422, 846, 1324
BseMI	GCAATG	1 cut(s)	484
BseNI	ACTGG	3 cut(s)	227, 529, 805
BseRI	GAGGAG	4 cut(s)	51, 992, 1083, 1255
BseSI	GKGCMC	1 cut(s)	1138
BseXI	GCAGC	1 cut(s)	149
BsgI	GTGCAG	1 cut(s)	237
Bsh1236I	CGCG	2 cut(s)	247, 1203
BshFI	GGCC	4 cut(s)	171, 505, 622, 1059
BshNI	GGYRCC	1 cut(s)	808
BshTI	ACCGGT	1 cut(s)	1188
BsiHKAI	GWGCWC	4 cut(s)	605, 987, 1138, 1303
BsiHKCI	CYCGRG	1 cut(s)	333
BsiSI	CCGG	4 cut(s)	334, 961, 1189, 1318
BslI	CCNNNNNNNGG	3 cut(s)	422, 846, 1324
BsmAI	GTCTC	1 cut(s)	1341
BsnI	GGCC	4 cut(s)	171, 505, 622, 1059
BsoBI	CYCGRG	1 cut(s)	333
Bsp1286I	GDGCHC	4 cut(s)	605, 987, 1138, 1303
Bsp143I	GATC	4 cut(s)	15, 636, 889, 1204
Bsp1720I	GCTNAGC	1 cut(s)	1211
BspACI	CCGC	5 cut(s)	23, 247, 489, 793, 1201
BspANI	GGCC	4 cut(s)	171, 505, 622, 1059
BspFNI	CGCG	2 cut(s)	247, 1203
BspHI	TCATGA	1 cut(s)	199
BspLI	GGNNCC	2 cut(s)	514, 810
BspPI	GGATC	1 cut(s)	884
BspT107I	GGYRCC	1 cut(s)	808
BsrBI	CCGCTC	1 cut(s)	23
BsrDI	GCAATG	1 cut(s)	484
BsrFI	RCCGGY	2 cut(s)	960, 1188
BsrI	ACTGG	3 cut(s)	227, 529, 805
BssAI	RCCGGY	2 cut(s)	960, 1188
BssECI	CCNNGG	4 cut(s)	332, 333, 509, 711
BssMI	GATC	4 cut(s)	15, 636, 889, 1204
Bst2UI	CCWGG	2 cut(s)	510, 695
Bst4CI	ACNGT	3 cut(s)	357, 1021, 1289
Bst6I	CTCTTC	4 cut(s)	442, 486, 1081, 1101
BstC8I	GCNNGC	2 cut(s)	266, 924
BstDEI	CTNAG	2 cut(s)	614, 1211
BstF5I	GGATG	3 cut(s)	430, 688, 707
BstFNI	CGCG	2 cut(s)	247, 1203
BstHHI	GCGC	1 cut(s)	1296
BstKTI	GATC	4 cut(s)	18, 639, 892, 1207
BstMAI	GTCTC	1 cut(s)	1341
BstMBI	GATC	4 cut(s)	15, 636, 889, 1204
BstMWI	GCNNNNNNNGC	2 cut(s)	72, 1318
BstNI	CCWGG	2 cut(s)	510, 695
BstSCI	CCNGG	4 cut(s)	332, 333, 508, 693
BstSFI	CTRYAG	1 cut(s)	186
BstSLI	GKGCMC	1 cut(s)	1138
BstUI	CGCG	2 cut(s)	247, 1203
BstV1I	GCAGC	1 cut(s)	149
BstXI	CCANNNNNNTGG	1 cut(s)	1055
BsuRI	GGCC	4 cut(s)	171, 505, 622, 1059
BtgZI	GCGATG	1 cut(s)	812
BtsCI	GGATG	3 cut(s)	430, 688, 707
BtsIMutI	CAGTG	3 cut(s)	522, 646, 1026
Cac8I	GCNNGC	2 cut(s)	266, 924
CciI	TCATGA	1 cut(s)	199
CfoI	GCGC	1 cut(s)	1296
Cfr10I	RCCGGY	2 cut(s)	960, 1188
Cfr13I	GGNCC	3 cut(s)	41, 503, 513
Cfr9I	CCCGGG	1 cut(s)	333
CseI	GACGC	2 cut(s)	257, 986
Csp6I	GTAC	3 cut(s)	57, 370, 1009
CspAI	ACCGGT	1 cut(s)	1188
CviAII	CATG	4 cut(s)	53, 200, 846, 1164
CviQI	GTAC	3 cut(s)	57, 370, 1009
DdeI	CTNAG	2 cut(s)	614, 1211
DpnI	GATC	4 cut(s)	17, 638, 891, 1206
DpnII	GATC	4 cut(s)	15, 636, 889, 1204
DraIII	CACNNNGTG	1 cut(s)	1021
Eam1104I	CTCTTC	4 cut(s)	442, 486, 1081, 1101
EarI	CTCTTC	4 cut(s)	442, 486, 1081, 1101
Ecl136II	GAGCTC	1 cut(s)	603
Eco147I	AGGCCT	1 cut(s)	622
Eco24I	GRGCYC	1 cut(s)	605
Eco47I	GGWCC	2 cut(s)	41, 513
Eco53kI	GAGCTC	1 cut(s)	603
Eco57I	CTGAAG	2 cut(s)	1062, 1134
Eco88I	CYCGRG	1 cut(s)	333
EcoICRI	GAGCTC	1 cut(s)	603
EcoO109I	RGGNCCY	1 cut(s)	513
EcoRII	CCWGG	2 cut(s)	508, 693
EcoT38I	GRGCYC	1 cut(s)	605
FaeI	CATG	4 cut(s)	56, 203, 849, 1167
FatI	CATG	4 cut(s)	52, 199, 845, 1163
FauI	CCCGC	1 cut(s)	1208
FauNDI	CATATG	1 cut(s)	781
FblI	GTMKAC	1 cut(s)	185
Fnu4HI	GCNGC	1 cut(s)	138
FokI	GGATG	3 cut(s)	417, 694, 695
FriOI	GRGCYC	1 cut(s)	605
Fsp4HI	GCNGC	1 cut(s)	138
FspBI	CTAG	3 cut(s)	365, 417, 1304
GlaI	GCGC	1 cut(s)	1295
GluI	GCNGC	1 cut(s)	138
GsuI	CTGGAG	1 cut(s)	492
HaeIII	GGCC	4 cut(s)	171, 505, 622, 1059
HapII	CCGG	4 cut(s)	334, 961, 1189, 1318
HgaI	GACGC	2 cut(s)	257, 986
HhaI	GCGC	1 cut(s)	1296
Hin1II	CATG	4 cut(s)	56, 203, 849, 1167
Hin6I	GCGC	1 cut(s)	1294
HinP1I	GCGC	1 cut(s)	1294
HincII	GTYRAC	3 cut(s)	499, 865, 1186
HindII	GTYRAC	3 cut(s)	499, 865, 1186
HinfI	GANTC	4 cut(s)	196, 239, 308, 1073
HpaII	CCGG	4 cut(s)	334, 961, 1189, 1318
HphI	GGTGA	1 cut(s)	1054
Hpy166II	GTNNAC	7 cut(s)	186, 499, 865, 1038, 1136, 1186, 1194
Hpy188III	TCNNGA	3 cut(s)	200, 725, 1112
Hpy8I	GTNNAC	7 cut(s)	186, 499, 865, 1038, 1136, 1186, 1194
Hpy99I	CGWCG	1 cut(s)	273
HpyAV	CCTTC	6 cut(s)	78, 298, 538, 556, 612, 1109
HpyCH4III	ACNGT	3 cut(s)	357, 1021, 1289
HpyCH4IV	ACGT	1 cut(s)	294
HpyCH4V	TGCA	9 cut(s)	137, 218, 291, 578, 591, 785, 898, 1136, 1220
HpyF10VI	GCNNNNNNNGC	2 cut(s)	72, 1318
HpyF3I	CTNAG	2 cut(s)	614, 1211
HpySE526I	ACGT	1 cut(s)	294
Hsp92II	CATG	4 cut(s)	56, 203, 849, 1167
HspAI	GCGC	1 cut(s)	1294
Kzo9I	GATC	4 cut(s)	15, 636, 889, 1204
LmnI	GCTCC	3 cut(s)	20, 600, 990
Lsp1109I	GCAGC	1 cut(s)	149
LweI	GCATC	3 cut(s)	439, 864, 885
MaeI	CTAG	3 cut(s)	365, 417, 1304
MaeII	ACGT	1 cut(s)	294
MaeIII	GTNAC	2 cut(s)	641, 1345
MalI	GATC	4 cut(s)	17, 638, 891, 1206
MbiI	CCGCTC	1 cut(s)	23
MboI	GATC	4 cut(s)	15, 636, 889, 1204
MhlI	GDGCHC	4 cut(s)	605, 987, 1138, 1303
MluCI	AATT	3 cut(s)	110, 1153, 1235
MlyI	GAGTC	1 cut(s)	1067
MmeI	TCCRAC	1 cut(s)	458
MroXI	GAANNNNTTC	1 cut(s)	390
MseI	TTAA	4 cut(s)	324, 882, 1176, 1232
MspI	CCGG	4 cut(s)	334, 961, 1189, 1318
MspR9I	CCNGG	4 cut(s)	334, 335, 510, 695
MvaI	CCWGG	2 cut(s)	510, 695
MvnI	CGCG	2 cut(s)	247, 1203
MwoI	GCNNNNNNNGC	2 cut(s)	72, 1318
NciI	CCSGG	2 cut(s)	334, 335
NdeI	CATATG	1 cut(s)	781
NdeII	GATC	4 cut(s)	15, 636, 889, 1204
NlaIII	CATG	4 cut(s)	56, 203, 849, 1167
NlaIV	GGNNCC	2 cut(s)	514, 810
NmuCI	GTSAC	1 cut(s)	641
PagI	TCATGA	1 cut(s)	199
PceI	AGGCCT	1 cut(s)	622
PdmI	GAANNNNTTC	1 cut(s)	390
PfeI	GAWTC	3 cut(s)	196, 239, 308
PinAI	ACCGGT	1 cut(s)	1188
PkrI	GCNGC	1 cut(s)	139
PleI	GAGTC	1 cut(s)	1067
PpsI	GAGTC	1 cut(s)	1067
PpuMI	RGGWCCY	1 cut(s)	513
Psp124BI	GAGCTC	1 cut(s)	605
Psp1406I	AACGTT	1 cut(s)	294
Psp5II	RGGWCCY	1 cut(s)	513
Psp6I	CCWGG	2 cut(s)	508, 693
PspGI	CCWGG	2 cut(s)	508, 693
PspN4I	GGNNCC	2 cut(s)	514, 810
PspPI	GGNCC	3 cut(s)	41, 503, 513
PspPPI	RGGWCCY	1 cut(s)	513
RsaI	GTAC	3 cut(s)	58, 371, 1010
RsaNI	GTAC	3 cut(s)	57, 370, 1009
SacI	GAGCTC	1 cut(s)	605
SaqAI	TTAA	4 cut(s)	324, 882, 1176, 1232
SatI	GCNGC	1 cut(s)	138
Sau3AI	GATC	4 cut(s)	15, 636, 889, 1204
Sau96I	GGNCC	3 cut(s)	41, 503, 513
SchI	GAGTC	1 cut(s)	1067
ScrFI	CCNGG	4 cut(s)	334, 335, 510, 695
SduI	GDGCHC	4 cut(s)	605, 987, 1138, 1303
SfaNI	GCATC	3 cut(s)	439, 864, 885
SfcI	CTRYAG	1 cut(s)	186
SinI	GGWCC	2 cut(s)	41, 513
SmaI	CCCGGG	1 cut(s)	335
SmlI	CTYRAG	2 cut(s)	440, 517
SmoI	CTYRAG	2 cut(s)	440, 517
Sse9I	AATT	3 cut(s)	110, 1153, 1235
SseBI	AGGCCT	1 cut(s)	622
SsiI	CCGC	5 cut(s)	23, 247, 489, 793, 1201
SspI	AATATT	1 cut(s)	281
SspMI	CTAG	3 cut(s)	365, 417, 1304
SstI	GAGCTC	1 cut(s)	605
StuI	AGGCCT	1 cut(s)	622
StyD4I	CCNGG	4 cut(s)	332, 333, 508, 693
TaaI	ACNGT	3 cut(s)	357, 1021, 1289
TaiI	ACGT	1 cut(s)	297
TasI	AATT	3 cut(s)	110, 1153, 1235
TatI	WGTACW	2 cut(s)	369, 1008
TfiI	GAWTC	3 cut(s)	196, 239, 308
Tru1I	TTAA	4 cut(s)	324, 882, 1176, 1232
Tru9I	TTAA	4 cut(s)	324, 882, 1176, 1232
TscAI	CASTG	3 cut(s)	529, 646, 1026
TseFI	GTSAC	1 cut(s)	641
TseI	GCWGC	1 cut(s)	137
Tsp45I	GTSAC	1 cut(s)	641
TspGWI	ACGGA	2 cut(s)	288, 1121
TspMI	CCCGGG	1 cut(s)	333
TspRI	CASTG	3 cut(s)	529, 646, 1026
VneI	GTGCAC	1 cut(s)	1134
VpaK11BI	GGWCC	2 cut(s)	41, 513
XapI	RAATTY	1 cut(s)	1153
XmaI	CCCGGG	1 cut(s)	333
XmiI	GTMKAC	1 cut(s)	185
XmnI	GAANNNNTTC	1 cut(s)	390
XspI	CTAG	3 cut(s)	365, 417, 1304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.