RLG00000006220

Domain of unknown function (DUF383)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0013408
Physical Location & Seq
Forward (+)
5323117 .. 5327670
4554 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006220

Sequence Viewer

Length: 1236 bp
ATGTATAAAACGTTTAAGGATACGTACATTTTCAGACAGGGGAGAGCATTGTGGCGTCCAGAATGTTCTGTTTTCAGGGGAGGTTTACTCGATCGGAGATCTGACGGTGGAGAAGTGGCGAAGTGGGAAAACGATGTGAAGAAGAAGAAGAAGATCTCGAAGTCGGGAGTGAACGAAAAAGTGACCGTGTCTGCTGCGGCAGCGGCGAAAGACAACCAAACCATGGCGACGGAACTCGAAGAACTAGTGGGATTTCTATCTTCCCCATCTCCAAATTTGACAAAGGCAGCTGTTGATATTGTTCATGGATTAACCGGGTCCGAAGATGGCTTGAAGTCTCTAGCCAATCATGCAGATATTCTGCTGCCGCCATTATCTCGGCTCTTAGCCGGAAAGAAGGAGGTCTCGGAACCTGCAGCAGTAGCTCTTGTTAATCTTTCCCAGAGGTCGGCTGTAGCAGCAAAGATGGTTGATATGGGAATGATTAACCTGGCTATGGACCTTTTATTTAAGTCAGAACCTAATATAAGCCGGTTGCTGGTAATGCTTTTAGTTAATCTCACGCAATTAGAAAGTGGTACTGCCTCTTTACTGCAGACTGGAGATGAGAAAATGCAAGGGCTCTATGTTATGAAGCTTGTGAGATCATTTTGTAGATCCTCCTCCAGTGAAGATAGCGAAGATCCATTTGAACATGTTGGGTCTATACTTGTGAACATCTCAAAGAAAGAAGCAGGCAGGAAACTTTTACTGGACCCTAAGCGAGGACTTCTGAAGCAGATTATTAGACAGTATGACTCTTCTAGCCCGTTGAGAAGGAAAGGGGTTTCTGGAACTATTCGTAACTGTTGTTTTGAAGCTGCAAGCGAGCTTCAAAATTTGCTTTTGATTTCAGAGTTTCTCTGGCCAGCTCTGCTTCTACCTGTTGCCGGTAACAAGATTTACAGTCAGCAAGACAGATCAAAAATGCCACTTGAGCTTAGTAGTGCTCTCTCAATTGAGCGTGAACCAGTTGATGATCCTGAAATTCGTGCTGAAGTCCTGGAGGCAATATACATGATCACATTACAGGAGGCAGGTCTAAGAGCCTTTTGGTCTGTCAATGGACCAAGAATAATACAAGTGGGTTATGAAGATGAGGAAGATCCTAAAGTAATGGAAGCATATGAGCAACTCGGCTCCTTGTTGATTAATAGCAGCGGGACAGAGGAATCAGCAATTGAGACATCAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF383 DUF384

Protein Analysis

412

Amino Acids

45.21

Weight (kDa)

5.59

Isoelectric Point (pI)

57.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF383 PF04063 172 - 344 9.4e-38 Domain of unknown function (DUF383)
DUF384 PF04064 350 - 402 1.3e-10 Domain of unknown function (DUF384)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013408)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14300 AT1G14300
fragaria_vesca FvH4_4g31470 FvH4_4g31470
malus_domestica MD16G1074200.v1.1
pyrus_communis pycom16g06420
rosa_chinensis RchiOBHm_Chr4g0439961
rosa_laevigata RLG00000006220
rosa_multiflora Rmu_sc0006000.1_g000004 Rmu_sc0023432.1_g000002
rosa_roxburghii Rroxscaffold_5G00380910
rosa_rugosa Rorug04G0322700
rosa_samantha Rh4AG373800 Rh4BG386100 Rh4CG377200 Rh4CG400600 Rh4DG380400
rosa_wichuraiana Rw4G031970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 421, 1067
AccB7I CCANNNNNTGG 1 cut(s) 223
AciI CCGC 4 cut(s) 197, 203, 368, 1200
AclI AACGTT 1 cut(s) 11
AclWI GGATC 4 cut(s) 651, 677, 1013, 1139
AcoI YGGCCR 1 cut(s) 905
AcsI RAATTY 3 cut(s) 274, 877, 1026
AcuI CTGAAG 2 cut(s) 794, 1056
AcyI GRCGYC 1 cut(s) 55
AfaI GTAC 2 cut(s) 26, 580
AfiI CCNNNNNNNGG 6 cut(s) 223, 448, 496, 538, 764, 929
AflIII ACRYGT 1 cut(s) 694
AgsI TTSAA 4 cut(s) 334, 692, 857, 875
AhlI ACTAGT 1 cut(s) 244
AjnI CCWGG 2 cut(s) 489, 1041
AluBI AGCT 7 cut(s) 290, 425, 637, 860, 871, 911, 979
AluI AGCT 7 cut(s) 290, 425, 637, 860, 871, 911, 979
Alw21I GWGCWC 1 cut(s) 991
Alw26I GTCTC 3 cut(s) 342, 409, 1217
AlwI GGATC 4 cut(s) 651, 677, 1013, 1139
AoxI GGCC 1 cut(s) 905
ApeKI GCWGC 8 cut(s) 194, 200, 287, 364, 416, 458, 860, 1197
ApoI RAATTY 3 cut(s) 274, 877, 1026
AseI ATTAAT 1 cut(s) 1191
AspS9I GGNCC 4 cut(s) 318, 499, 754, 1106
AsuC2I CCSGG 1 cut(s) 316
AvaII GGWCC 4 cut(s) 318, 499, 754, 1106
BalI TGGCCA 1 cut(s) 907
BanII GRGCYC 1 cut(s) 624
Bbv12I GWGCWC 1 cut(s) 991
BbvI GCAGC 8 cut(s) 181, 212, 299, 351, 428, 470, 847, 1209
BccI CCATC 3 cut(s) 274, 320, 460
BciT130I CCWGG 2 cut(s) 491, 1043
BciVI GTATCC 1 cut(s) 13
BclI TGATCA 1 cut(s) 1059
BcnI CCSGG 1 cut(s) 316
BcoDI GTCTC 3 cut(s) 342, 409, 1217
BcuI ACTAGT 1 cut(s) 244
BfaI CTAG 3 cut(s) 245, 341, 804
BfmI CTRYAG 3 cut(s) 414, 453, 593
BfuAI ACCTGC 2 cut(s) 421, 1067
BfuI GTATCC 1 cut(s) 13
BglII AGATCT 2 cut(s) 98, 153
Bme1390I CCNGG 3 cut(s) 316, 491, 1043
Bme18I GGWCC 4 cut(s) 318, 499, 754, 1106
BmgT120I GGNCC 4 cut(s) 318, 499, 754, 1106
BmiI GGNNCC 4 cut(s) 319, 411, 756, 1180
BmrFI CCNGG 3 cut(s) 316, 491, 1043
BplI GAGNNNNNCTC 2 cut(s) 72, 104
BpmI CTGGAG 3 cut(s) 621, 649, 1064
Bpu10I CCTNAGC 1 cut(s) 759
BpuEI CTTGAG 1 cut(s) 995
BpuMI CCSGG 1 cut(s) 316
BsaAI YACGTR 1 cut(s) 24
BsaBI GATNNNNATC 1 cut(s) 256
BsaHI GRCGYC 1 cut(s) 55
BsaI GGTCTC 1 cut(s) 409
BsaJI CCNNGG 1 cut(s) 222
Bsc4I CCNNNNNNNGG 6 cut(s) 223, 448, 496, 538, 764, 929
Bse118I RCCGGY 2 cut(s) 531, 929
Bse1I ACTGG 4 cut(s) 604, 666, 756, 1010
Bse8I GATNNNNATC 1 cut(s) 256
BseBI CCWGG 2 cut(s) 491, 1043
BseDI CCNNGG 1 cut(s) 222
BseJI GATNNNNATC 1 cut(s) 256
BseLI CCNNNNNNNGG 6 cut(s) 223, 448, 496, 538, 764, 929
BseNI ACTGG 4 cut(s) 604, 666, 756, 1010
BseRI GAGGAG 1 cut(s) 652
BseXI GCAGC 8 cut(s) 181, 212, 299, 351, 428, 470, 847, 1209
Bsh1285I CGRYCG 1 cut(s) 94
BshFI GGCC 1 cut(s) 907
BsiEI CGRYCG 1 cut(s) 94
BsiHKAI GWGCWC 1 cut(s) 991
BsiSI CCGG 4 cut(s) 315, 390, 532, 930
BslFI GGGAC 1 cut(s) 1216
BslI CCNNNNNNNGG 6 cut(s) 223, 448, 496, 538, 764, 929
BsmAI GTCTC 3 cut(s) 342, 409, 1217
BsmFI GGGAC 1 cut(s) 1216
BsnI GGCC 1 cut(s) 907
Bso31I GGTCTC 1 cut(s) 409
Bsp1286I GDGCHC 2 cut(s) 624, 991
Bsp19I CCATGG 1 cut(s) 222
BspACI CCGC 4 cut(s) 197, 203, 368, 1200
BspANI GGCC 1 cut(s) 907
BspLI GGNNCC 4 cut(s) 319, 411, 756, 1180
BspMAI CTGCAG 2 cut(s) 418, 597
BspMI ACCTGC 2 cut(s) 421, 1067
BspPI GGATC 4 cut(s) 651, 677, 1013, 1139
BspTNI GGTCTC 1 cut(s) 409
BsrFI RCCGGY 2 cut(s) 531, 929
BsrI ACTGG 4 cut(s) 604, 666, 756, 1010
BssAI RCCGGY 2 cut(s) 531, 929
BssECI CCNNGG 1 cut(s) 222
BssNI GRCGYC 1 cut(s) 55
BssT1I CCWWGG 1 cut(s) 222
Bst2UI CCWGG 2 cut(s) 491, 1043
Bst4CI ACNGT 5 cut(s) 107, 187, 792, 848, 947
Bst6I CTCTTC 1 cut(s) 805
BstACI GRCGYC 1 cut(s) 55
BstBAI YACGTR 1 cut(s) 24
BstC8I GCNNGC 4 cut(s) 736, 865, 869, 909
BstDEI CTNAG 4 cut(s) 385, 759, 980, 1082
BstDSI CCRYGG 1 cut(s) 222
BstENI CCTNNNNNAGG 1 cut(s) 762
BstMAI GTCTC 3 cut(s) 342, 409, 1217
BstMCI CGRYCG 1 cut(s) 94
BstMWI GCNNNNNNNGC 8 cut(s) 200, 203, 350, 422, 458, 544, 913, 976
BstNI CCWGG 2 cut(s) 491, 1043
BstNSI RCATGY 1 cut(s) 698
BstSCI CCNGG 3 cut(s) 314, 489, 1041
BstSFI CTRYAG 3 cut(s) 414, 453, 593
BstSNI TACGTA 1 cut(s) 24
BstV1I GCAGC 8 cut(s) 181, 212, 299, 351, 428, 470, 847, 1209
BstX2I RGATCY 5 cut(s) 98, 153, 656, 682, 1144
BstYI RGATCY 5 cut(s) 98, 153, 656, 682, 1144
BsuI GTATCC 1 cut(s) 13
BsuRI GGCC 1 cut(s) 907
BtgI CCRYGG 1 cut(s) 222
BtsIMutI CAGTG 1 cut(s) 673
BveI ACCTGC 2 cut(s) 421, 1067
Cac8I GCNNGC 4 cut(s) 736, 865, 869, 909
Cfr10I RCCGGY 2 cut(s) 531, 929
Cfr13I GGNCC 4 cut(s) 318, 499, 754, 1106
CseI GACGC 1 cut(s) 44
Csp6I GTAC 2 cut(s) 25, 579
CviAII CATG 5 cut(s) 223, 305, 350, 695, 1057
CviQI GTAC 2 cut(s) 25, 579
DdeI CTNAG 4 cut(s) 385, 759, 980, 1082
EaeI YGGCCR 1 cut(s) 905
Eam1104I CTCTTC 1 cut(s) 805
EarI CTCTTC 1 cut(s) 805
Eco105I TACGTA 1 cut(s) 24
Eco130I CCWWGG 1 cut(s) 222
Eco24I GRGCYC 1 cut(s) 624
Eco31I GGTCTC 1 cut(s) 409
Eco47I GGWCC 4 cut(s) 318, 499, 754, 1106
Eco57I CTGAAG 2 cut(s) 794, 1056
EcoNI CCTNNNNNAGG 1 cut(s) 762
EcoRII CCWGG 2 cut(s) 489, 1041
EcoT14I CCWWGG 1 cut(s) 222
EcoT38I GRGCYC 1 cut(s) 624
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 5 cut(s) 226, 308, 353, 698, 1060
FaqI GGGAC 1 cut(s) 1216
FatI CATG 5 cut(s) 222, 304, 349, 694, 1056
FauI CCCGC 1 cut(s) 1193
FauNDI CATATG 1 cut(s) 1165
FbaI TGATCA 1 cut(s) 1059
FriOI GRGCYC 1 cut(s) 624
FspBI CTAG 3 cut(s) 245, 341, 804
GsuI CTGGAG 3 cut(s) 621, 649, 1064
HaeIII GGCC 1 cut(s) 907
HapII CCGG 4 cut(s) 315, 390, 532, 930
HgaI GACGC 1 cut(s) 44
Hin1I GRCGYC 1 cut(s) 55
Hin1II CATG 5 cut(s) 226, 308, 353, 698, 1060
HindIII AAGCTT 1 cut(s) 635
HinfI GANTC 2 cut(s) 797, 1211
HpaII CCGG 4 cut(s) 315, 390, 532, 930
Hpy166II GTNNAC 4 cut(s) 86, 172, 715, 1007
Hpy188I TCNGA 8 cut(s) 35, 96, 103, 322, 409, 517, 774, 895
Hpy188III TCNNGA 5 cut(s) 59, 157, 165, 831, 1022
Hpy8I GTNNAC 4 cut(s) 86, 172, 715, 1007
Hpy99I CGWCG 1 cut(s) 232
HpyAV CCTTC 2 cut(s) 391, 810
HpyCH4III ACNGT 5 cut(s) 107, 187, 792, 848, 947
HpyCH4IV ACGT 2 cut(s) 11, 23
HpyCH4V TGCA 5 cut(s) 353, 416, 595, 616, 863
HpyF10VI GCNNNNNNNGC 8 cut(s) 200, 203, 350, 422, 458, 544, 913, 976
HpyF3I CTNAG 4 cut(s) 385, 759, 980, 1082
HpySE526I ACGT 2 cut(s) 11, 23
Hsp92I GRCGYC 1 cut(s) 55
Hsp92II CATG 5 cut(s) 226, 308, 353, 698, 1060
Ksp22I TGATCA 1 cut(s) 1059
LmnI GCTCC 1 cut(s) 1184
Lsp1109I GCAGC 8 cut(s) 181, 212, 299, 351, 428, 470, 847, 1209
MaeI CTAG 3 cut(s) 245, 341, 804
MaeII ACGT 2 cut(s) 11, 23
MaeIII GTNAC 3 cut(s) 181, 842, 932
MfeI CAATTG 2 cut(s) 996, 1218
MflI RGATCY 5 cut(s) 98, 153, 656, 682, 1144
MhlI GDGCHC 2 cut(s) 624, 991
MlsI TGGCCA 1 cut(s) 907
MluCI AATT 7 cut(s) 274, 566, 877, 996, 1026, 1218, 1231
MluNI TGGCCA 1 cut(s) 907
MlyI GAGTC 1 cut(s) 791
Mox20I TGGCCA 1 cut(s) 907
MscI TGGCCA 1 cut(s) 907
MseI TTAA 7 cut(s) 15, 311, 432, 486, 510, 555, 1191
Msp20I TGGCCA 1 cut(s) 907
MspA1I CMGCKG 3 cut(s) 203, 290, 1200
MspI CCGG 4 cut(s) 315, 390, 532, 930
MspR9I CCNGG 3 cut(s) 316, 491, 1043
MunI CAATTG 2 cut(s) 996, 1218
MvaI CCWGG 2 cut(s) 491, 1043
MwoI GCNNNNNNNGC 8 cut(s) 200, 203, 350, 422, 458, 544, 913, 976
NciI CCSGG 1 cut(s) 316
NcoI CCATGG 1 cut(s) 222
NdeI CATATG 1 cut(s) 1165
NlaIII CATG 5 cut(s) 226, 308, 353, 698, 1060
NlaIV GGNNCC 4 cut(s) 319, 411, 756, 1180
NmeAIII GCCGAG 2 cut(s) 358, 1155
NmuCI GTSAC 1 cut(s) 181
NspI RCATGY 1 cut(s) 698
PciI ACATGT 1 cut(s) 694
PfeI GAWTC 1 cut(s) 1211
PflFI GACNNNGTC 1 cut(s) 187
PflMI CCANNNNNTGG 1 cut(s) 223
PfoI TCCNGGA 1 cut(s) 1041
Ple19I CGATCG 1 cut(s) 94
PleI GAGTC 1 cut(s) 791
PpsI GAGTC 1 cut(s) 791
Ppu21I YACGTR 1 cut(s) 24
PscI ACATGT 1 cut(s) 694
PshBI ATTAAT 1 cut(s) 1191
Psp1406I AACGTT 1 cut(s) 11
Psp6I CCWGG 2 cut(s) 489, 1041
PspGI CCWGG 2 cut(s) 489, 1041
PspN4I GGNNCC 4 cut(s) 319, 411, 756, 1180
PspPI GGNCC 4 cut(s) 318, 499, 754, 1106
PstI CTGCAG 2 cut(s) 418, 597
PsuI RGATCY 5 cut(s) 98, 153, 656, 682, 1144
PsyI GACNNNGTC 1 cut(s) 187
PvuI CGATCG 1 cut(s) 94
PvuII CAGCTG 1 cut(s) 290
RsaI GTAC 2 cut(s) 26, 580
RsaNI GTAC 2 cut(s) 25, 579
SaqAI TTAA 7 cut(s) 15, 311, 432, 486, 510, 555, 1191
Sau96I GGNCC 4 cut(s) 318, 499, 754, 1106
SchI GAGTC 1 cut(s) 791
ScrFI CCNGG 3 cut(s) 316, 491, 1043
SduI GDGCHC 2 cut(s) 624, 991
SfcI CTRYAG 3 cut(s) 414, 453, 593
SinI GGWCC 4 cut(s) 318, 499, 754, 1106
SmlI CTYRAG 1 cut(s) 974
SmoI CTYRAG 1 cut(s) 974
SnaBI TACGTA 1 cut(s) 24
SpeI ACTAGT 1 cut(s) 244
Sse9I AATT 7 cut(s) 274, 566, 877, 996, 1026, 1218, 1231
SsiI CCGC 4 cut(s) 197, 203, 368, 1200
SspMI CTAG 3 cut(s) 245, 341, 804
StyD4I CCNGG 3 cut(s) 314, 489, 1041
StyI CCWWGG 1 cut(s) 222
TaaI ACNGT 5 cut(s) 107, 187, 792, 848, 947
TaiI ACGT 2 cut(s) 14, 26
TaqI TCGA 3 cut(s) 90, 158, 237
TasI AATT 7 cut(s) 274, 566, 877, 996, 1026, 1218, 1231
TauI GCSGC 3 cut(s) 200, 206, 370
TfiI GAWTC 1 cut(s) 1211
Tru1I TTAA 7 cut(s) 15, 311, 432, 486, 510, 555, 1191
Tru9I TTAA 7 cut(s) 15, 311, 432, 486, 510, 555, 1191
TscAI CASTG 1 cut(s) 673
TseFI GTSAC 1 cut(s) 181
TseI GCWGC 8 cut(s) 194, 200, 287, 364, 416, 458, 860, 1197
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 3 cut(s) 293, 647, 1146
TspGWI ACGGA 1 cut(s) 245
TspRI CASTG 1 cut(s) 673
Tth111I GACNNNGTC 1 cut(s) 187
Van91I CCANNNNNTGG 1 cut(s) 223
VpaK11BI GGWCC 4 cut(s) 318, 499, 754, 1106
VspI ATTAAT 1 cut(s) 1191
XagI CCTNNNNNAGG 1 cut(s) 762
XapI RAATTY 3 cut(s) 274, 877, 1026
XceI RCATGY 1 cut(s) 698
XspI CTAG 3 cut(s) 245, 341, 804
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.